FF:750-23E6: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{f5samples
|id=FF:750-23E6
|name=lung, neonate N10, biol_rep1
|sample_id=750
|rna_tube_id=750-23E6
|rna_box=750-23E6
|rna_position=750-23E6
|sample_cell_lot=
|sample_...") |
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005871 | ||
| | |accession_numbers=CAGE;DRX009040;DRR009914;DRZ001339;DRZ002722;DRZ012689;DRZ014072 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000305,FF:0011415 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr10:22539932..22539956,-!p1@Tcf21!2.09!315.40!Tcf21;;chr11:85699862..85699920,+!p1@Tbx4!2.09!120.87!Tbx4;;chr8:123608252..123608268,+!p1@Foxf1a!1.96!130.43!Foxf1a;;chr5:77543897..77543911,-!p2@Hopx!1.83!125.17!Hopx;;chr2:180069370..180069409,-!p1@Gata5!1.74!62.83!Gata5;;chr12:57636034..57636087,-!p1@Nkx2-1!1.67!46.08!Nkx2-1;;chr13:31717548..31717596,+!p1@Foxf2!1.65!84.03!Foxf2;;chr12:37835120..37835133,+!p2@Meox2!1.50!43.69!Meox2;;chr12:37835141..37835194,+!p1@Meox2!1.49!89.45!Meox2;;chr11:85646303..85646329,+!p1@Tbx2!1.48!186.88!Tbx2;;chr5:98609885..98609900,+!p1@Prdm8!1.48!29.50!Prdm8;;chr12:57636178..57636194,-!p2@Nkx2-1!1.43!25.67!Nkx2-1;;chr2:103264213..103264233,+!p1@Elf5!1.38!22.80!Elf5;;chr13:72101161..72101177,-!p2@Irx1!1.37!30.93!Irx1;;chr13:31717597..31717613,+!p2@Foxf2!1.35!21.53!Foxf2;;chr11:85646341..85646352,+!p3@Tbx2!1.32!38.91!Tbx2;;chr14:64562503..64562524,+!p1@Sox7!1.30!107.63!Sox7;;chr11:116196664..116196679,-!p1@Foxj1!1.28!27.59!Foxj1;;chr2:147871627..147871641,-!p1@Foxa2!1.27!17.54!Foxa2;;chr17:87153462..87153473,+!p3@Epas1!1.25!62.35!Epas1;;chr11:85646263..85646278,+!p2@Tbx2!1.22!39.23!Tbx2;;chr13:72766250..72766273,+!p1@Irx2!1.20!22.96!Irx2;;chr17:87153028..87153049,+!p2@Epas1!1.19!294.19!Epas1;;chr17:87153240..87153254,+!p1@Epas1!1.18!274.42!Epas1;;chr6:52154386..52154407,-!p2@Hoxa5!1.18!18.02!Hoxa5;;chr13:72766279..72766296,+!p2@Irx2!1.14!19.29!Irx2;;chr12:37835203..37835218,+!p3@Meox2!1.13!14.99!Meox2;;chr12:57636220..57636236,-!p3@Nkx2-1!1.13!12.60!Nkx2-1;;chr1:4483679..4483695,-!p1@Sox17!1.12!57.56!Sox17;;chr11:85646469..85646488,+!p5@Tbx2!1.12!18.50!Tbx2;;chr6:52154414..52154462,-!p1@Hoxa5!1.10!16.10!Hoxa5;;chr12:58646974..58647003,-!p1@Foxa1!1.10!15.47!Foxa1;;chr18:53623836..53623839,+!p1@Prdm6!1.10!13.39!Prdm6;;chr1:186556323..186556370,-!p2@Hlx!1.07!29.50!Hlx;;chr12:37835248..37835260,+!p4@Meox2!1.07!10.68!Meox2;;chr5:77543935..77543947,-!p4@Hopx!1.06!10.52!Hopx;;chr11:85646427..85646451,+!p4@Tbx2!1.05!18.18!Tbx2;;chr13:72101141..72101158,-!p3@Irx1!1.04!12.60!Irx1;;chr6:88148650..88148669,+!p1@Gata2!1.03!81.64!Gata2;;chr11:85703483..85703508,+!p2@Tbx4!1.02!9.41!Tbx4;;chr12:36219645..36219730,-!p1@Ahr!1.01!92.64!Ahr;;chr17:87153440..87153451,+!p4@Epas1!1.00!18.50!Epas1;;chr1:4486481..4486501,-!p2@Sox17!1.00!13.55!Sox17;;chr12:57636240..57636256,-!p4@Nkx2-1!0.98!8.45!Nkx2-1;;chr5:120120667..120120685,+!p3@Tbx3!0.96!16.10!Tbx3;;chr13:72101178..72101203,-!p1@Irx1!0.96!12.92!Irx1;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.95!13.87!Hoxb2;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.95!10.68!Hoxb2;;chr11:85703335..85703350,+!p4@Tbx4!0.94!7.65!Tbx4;;chr16:95680889..95680991,-!p1@Erg!0.93!62.98!Erg;;chr11:70043257..70043263,-!p1@Bcl6b!0.92!13.08!Bcl6b;;chr5:120285144..120285160,+!p1@Tbx5!0.92!7.33!Tbx5;;chr6:99216488..99216534,-!p2@Foxp1!0.91!20.73!Foxp1;;chr8:94325321..94325366,-!p1@Irx3!0.91!17.70!Irx3;;chr13:31717614..31717628,+!p3@Foxf2!0.91!7.18!Foxf2;;chr17:87153519..87153533,+!p5@Epas1!0.89!10.21!Epas1;;chr5:77544170..77544181,-!p6@Hopx!0.89!6.70!Hopx;;chr11:85699562..85699575,+!p6@Tbx4!0.89!6.70!Tbx4;;chr4:122911086..122911112,+!p1@Heyl!0.88!82.12!Heyl;;chr12:57637732..57637777,-!p5@Nkx2-1!0.88!6.54!Nkx2-1;;chr16:14705925..14705951,+!p1@Snai2!0.87!47.20!Snai2;;chr2:167363692..167363710,+!p1@Snai1!0.86!80.37!Snai1;;chr8:94881733..94881790,+!p1@Irx5!0.86!12.76!Irx5;;chr17:87153505..87153516,+!p6@Epas1!0.86!8.93!Epas1;;chr18:11052642..11052659,+!p1@Gata6!0.85!32.53!Gata6;;chr13:99954640..99954681,+!p1@Zfp366!0.85!23.60!Zfp366;;chr2:103143336..103143367,-!p1@Ehf!0.85!10.21!Ehf;;chr8:94881872..94881887,+!p2@Irx5!0.85!6.54!Irx5;;chr3:30408603..30408668,-!p1@Mecom!0.84!14.19!Mecom;;chr8:94325486..94325510,-!p4@Irx3!0.84!7.97!Irx3;;chr19:26681672..26681716,+!p5@Smarca2!0.83!25.83!Smarca2;;chr4:148275237..148275311,+!p2@Casz1!0.83!25.35!Casz1;;chr9:63869802..63869815,-!p3@Smad6!0.83!11.96!Smad6;;chr1:38721792..38721845,-!p1@Aff3!0.83!7.33!Aff3;;chr11:96164821..96164865,+!p1@Hoxb5!0.83!5.74!Hoxb5;;chr18:52775562..52775650,+!p1@Zfp474!0.82!5.58!Zfp474;;chr2:181406327..181406350,-!p1@Sox18!0.81!182.74!Sox18;;chr10:92773591..92773623,-!p1@Elk3!0.81!132.99!Elk3;;chr5:120121020..120121049,+!p1@Tbx3!0.81!35.72!Tbx3;;chr6:98978245..98978289,-!p1@Foxp1!0.80!84.35!Foxp1;;chr4:119406389..119406411,+!p1@Hivep3!0.80!27.90!Hivep3;;chr12:37835219..37835230,+!p5@Meox2!0.80!5.26!Meox2;;chr4:44723520..44723544,-!p2@Pax5!0.79!5.10!Pax5;;chr11:83664365..83664383,+!p1@Hnf1b!0.79!5.10!Hnf1b;;chr4:82151126..82151133,-!p8@Nfib!0.78!6.70!Nfib;;chr14:22807107..22807119,-!p2@Zfp503!0.77!23.12!Zfp503;;chr9:24578720..24578735,-!p1@Tbx20!0.77!4.94!Tbx20;;chr19:26679654..26679675,+!p1@Smarca2!0.76!49.43!Smarca2;;chr8:94325814..94325839,-!p2@Irx3!0.76!10.52!Irx3;;chr9:96159147..96159204,+!p2@Tfdp2!0.76!9.41!Tfdp2;;chr11:52096804..52096896,-!p1@Tcf7!0.75!41.14!Tcf7;;chr12:39507680..39507715,+!p2@Etv1!0.75!9.73!Etv1;;chr18:55147667..55147746,-!p2@Zfp608!0.74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2!0.57!2.71!Foxf2;;chr9:63869918..63869936,-!p9@Smad6!0.57!2.71!Smad6;;chr1:186556307..186556318,-!p7@Hlx!0.57!2.71!Hlx;;chr10:80893549..80893590,-!p2@Nfic!0.56!36.83!Nfic;;chr16:92697560..92697592,-!p2@Runx1!0.56!20.41!Runx1;;chr15:76287876..76287894,+!p1@Scx!0.56!17.86!Scx;;chr10:92773708..92773734,-!p3@Elk3!0.56!5.90!Elk3;;chr2:44972869..44972895,-!p12@Zeb2!0.56!5.74!Zeb2;;chr7:74517982..74518012,-!p2@Mef2a!0.56!5.58!Mef2a;;chr6:52163319..52163342,-!p1@Hoxa3!0.56!4.15!Hoxa3;;chr3:130815703..130815721,+!p2@Lef1!0.56!3.35!Lef1;;chr5:77524250..77524300,-!p1@Hopx!0.55!64.74!Hopx;;chr4:32325688..32325777,+!p1@Bach2!0.55!27.90!Bach2;;chr4:82151622..82151643,-!p4@Nfib!0.55!12.92!Nfib;;chr4:82151148..82151159,-!p5@Nfib!0.55!8.61!Nfib;;chr2:77357622..77357704,-!p1@Zfp385b!0.55!8.13!Zfp385b;;chr4:128483731..128483757,-!p4@Zfp362!0.55!6.86!Zfp362;;chr8:94881639..94881650,+!p5@Irx5!0.55!2.55!Irx5;;chr11:96164905..96164919,+!p2@Hoxb5!0.55!2.55!Hoxb5;;chr4:154597177..154597195,-!p1@Ski!0.54!119.11!Ski;;chr2:44968512..44968530,-!p1@Zeb2!0.54!68.88!Zeb2;;chr18:39650303..39650371,-!p1@Nr3c1!0.54!36.20!Nr3c1;;chr11:98821749..98821799,+!p2@Rara!0.54!19.45!Rara;;chr2:152758901..152758925,-!p1@Foxs1!0.54!13.39!Foxs1;;chr4:13670571..13670625,+!p1@Runx1t1!0.54!7.97!Runx1t1;;chr14:56443806..56443848,+!p1@Nfatc4!0.54!5.74!Nfatc4;;chr16:43363968..43364001,+!p7@Zbtb20!0.54!5.10!Zbtb20;;chr17:37139455..37139469,+!p3@Zfp57!0.54!4.31!Zfp57;;chr3:30408384..30408431,-!p4@Mecom!0.54!3.35!Mecom;;chr7:71083428..71083518,-!p3@Klf13!0.53!23.28!Klf13;;chr1:137155026..137155042,-!p1@Elf3!0.53!17.38!Elf3;;chr6:72185232..72185272,-!p1@Atoh8!0.53!8.29!Atoh8;;chr16:43619101..43619151,+!p6@Zbtb20!0.53!6.86!Zbtb20;;chr2:91035197..91035237,-!p1@Nr1h3!0.53!5.74!Nr1h3;;chr7:38554763..38554780,-!p1@Zfp536!0.53!4.94!Zfp536;;chr15:40486754..40486771,+!p2@Zfpm2!0.53!4.78!Zfpm2;;chr6:37392095..37392154,-!p1@Creb3l2!0.52!95.35!Creb3l2;;chr8:118231723..118231740,-!p1@Maf!0.52!67.13!Maf;;chr18:69504195..69504213,+!p4@Tcf4!0.52!13.23!Tcf4;;chr9:96653072..96653154,-!p1@Zbtb38!0.52!7.49!Zbtb38;;chr10:67599361..67599372,-!p5@Arid5b!0.52!3.99!Arid5b;;chr14:98568822..98568837,-!p5@Dach1!0.52!3.83!Dach1;;chr12:39506841..39506848,+!p7@Etv1!0.52!3.03!Etv1;;chr2:167514456..167514473,+!p1@Cebpb!0.51!131.39!Cebpb;;chr1:133904183..133904211,+!p1@Elk4!0.51!24.87!Elk4;;chr8:87225670..87225697,+!p2@Lyl1!0.51!7.97!Lyl1;;chr5:77524231..77524245,-!p3@Hopx!0.51!6.70!Hopx;;chr13:99954688..99954710,+!p2@Zfp366!0.51!5.10!Zfp366;;chr3:54559463..54559493,+!p3@Smad9!0.51!4.78!Smad9;;chr6:72185210..72185228,-!p3@Atoh8!0.51!4.31!Atoh8;;chr15:81633203..81633215,+!p3@Tef!0.51!3.99!Tef;;chr17:37139432..37139444,+!p4@Zfp57!0.51!3.35!Zfp57;;chr11:96160360..96160397,+!p3@Hoxb6!0.51!2.23!Hoxb6;;chr4:44723633..44723646,-!p3@Pax5!0.51!2.23!Pax5;;chr8:87324243..87324277,-!p1@Nfix!0.50!69.04!Nfix;;chr18:80904854..80904919,-!p2@Nfatc1!0.50!34.12!Nfatc1;;chr9:36954842..36954908,-!p1@Pknox2!0.50!33.33!Pknox2;;chr7:87171047..87171078,+!p1@Zfp710!0.50!9.09!Zfp710;;chr10:126778916..126778974,-!p1@Gli1!0.50!5.74!Gli1;;chr2:120365588..120365602,-!p2@Zfp106!0.50!4.15!Zfp106;;chr1:38684431..38684450,-!p3@Aff3!0.50!3.99!Aff3;;chr2:44965761..44965785,-!p13@Zeb2!0.50!3.67!Zeb2;;chr15:40486883..40486903,+!p4@Zfpm2!0.50!3.19!Zfpm2;;chr8:94325446..94325459,-!p8@Irx3!0.50!2.39!Irx3;;chr4:94718879..94718898,-!p1@Jun!0.49!202.67!Jun;;chr12:81213989..81214006,-!p1@Zfp36l1!0.49!145.74!Zfp36l1;;chr15:102076870..102076941,-!p1@Rarg!0.49!30.46!Rarg;;chr1:38684260..38684312,-!p2@Aff3!0.49!19.29!Aff3;;chr17:37139472..37139514,+!p1@Zfp57!0.49!18.34!Zfp57;;chr13:37918486..37918575,+!p2@Rreb1!0.49!16.90!Rreb1;;chr2:92886297..92886329,-!p1@Prdm11!0.49!12.44!Prdm11;;chr4:154010918..154010931,-!p1@Prdm16!0.49!7.65!Prdm16;;chr6:14851440..14851497,+!p2@Foxp2!0.49!6.22!Foxp2;;chr9:63869729..63869749,-!p4@Smad6!0.49!4.94!Smad6;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.49!4.15!Zfhx3;;chrX:103070839..103070856,-!p4@Atrx!0.49!3.67!Atrx;;chr8:47825166..47825178,+!p2@Irf2!0.49!3.67!Irf2;;chr18:39649430..39649522,-!p2@Nr3c1!0.48!26.79!Nr3c1;;chr8:72663347..72663398,+!p2@2310045N01Rik,p2@Mef2b!0.48!13.55!Mef2b;;chr3:135354289..135354334,-!p3@Nfkb1!0.48!13.39!Nfkb1;;chr16:42875952..42875974,+!p4@Zbtb20!0.48!9.89!Zbtb20;;chr4:148178529..148178548,+!p3@Casz1!0.48!5.90!Casz1;;chr4:114732112..114732158,+!p1@Tal1!0.48!5.42!Tal1;;chr11:98821858..98821907,+!p6@Rara!0.48!3.83!Rara;;chr4:13670626..13670657,+!p5@Runx1t1!0.48!3.51!Runx1t1;;chr7:74517658..74517731,-!p1@Mef2a!0.47!120.39!Mef2a;;chr2:91864661..91864686,-!p1@Creb3l1!0.47!57.40!Creb3l1;;chr11:18918959..18918976,-!p2@Meis1!0.47!36.20!Meis1;;chr19:37509324..37509337,+!p1@Hhex!0.47!18.50!Hhex;;chr8:118230866..118230891,-!p4@Maf!0.47!16.90!Maf;;chr10:80893711..80893784,-!p3@Nfic!0.47!13.55!Nfic;;chr14:98569030..98569059,-!p3@Dach1!0.47!12.28!Dach1;;chr2:44965856..44965896,-!p5@Zeb2!0.47!9.89!Zeb2;;chr1:186556410..186556424,-!p1@Hlx!0.47!7.81!Hlx;;chr4:54957910..54957954,+!p2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19426687..19426708,+!p3@Zfp317!0.25!2.23!Zfp317;;chr11:44431710..44431725,+!p7@Ebf1!0.25!1.75!Ebf1;;chr16:4594853..4594884,+!p3@Glis2!0.25!1.75!Glis2;;chr18:79306603..79306620,-!p4@Setbp1!0.25!1.75!Setbp1;;chr3:30993859..30993870,+!p5@Skil!0.25!1.59!Skil;;chr17:27693922..27693934,+!p10@Hmga1-rs1,p11@Hmga1!0.25!1.28!Hmga1;;chrX:109714433..109714444,+!p2@Zfp711!0.25!1.28!Zfp711;;chrX:137077636..137077647,-!p7@Tsc22d3!0.25!1.12!Tsc22d3;;chr1:93698095..93698113,+!p3@Twist2!0.25!1.12!Twist2;;chr18:5591389..5591406,+!p3@Zeb1!0.25!1.12!Zeb1;;chr9:96159225..96159249,+!p5@Tfdp2!0.25!0.96!Tfdp2;;chr18:11052516..11052525,+!p5@Gata6!0.25!0.80!Gata6;;chr6:98978428..98978450,-!p15@Foxp1!0.25!0.80!Foxp1;;chr6:115372099..115372121,+!p5@Pparg!0.25!0.80!Pparg;;chr6:88148324..88148328,+!p3@Gata2!0.25!0.80!Gata2;;chr5:134720044..134720103,-!p6@Gtf2i!0.25!0.80!Gtf2i;;chr6:97879817..97879857,+!p2@Mitf!0.25!0.80!Mitf;;chr13:72766234..72766243,+!p3@Irx2!0.25!0.80!Irx2;;chrX:7544943..7545001,-!p1@Gata1!0.25!0.80!Gata1;;chr2:103264977..103264986,+!p6@Elf5!0.25!0.80!Elf5;;chr1:92950128..92950139,+!p4@Lrrfip1!0.25!0.80!Lrrfip1;;chr11:98822081..98822092,+!p14@Rara!0.25!0.80!Rara;;chr11:96880072..96880079,+!p1@Sp6!0.25!0.80!Sp6;;chr4:102792066..102792069,+!p14@Mier1!0.25!0.80!Mier1;;chr4:82145232..82145259,-!p9@Nfib!0.25!0.80!Nfib;;chr3:29911808..29911833,-!p8@Mecom!0.25!0.80!Mecom;;chr4:134676555..134676575,+!p2@Runx3!0.25!0.80!Runx3;;chr3:29911926..29911942,-!p13@Mecom!0.25!0.80!Mecom;;chr3:98186461..98186476,+!p2@Zfp697!0.25!0.80!Zfp697;;chr5:22940253..22940289,+!p1@Mll5!0.24!78.77!Mll5;;chr15:81575487..81575561,+!p1@Zc3h7b!0.24!33.96!Zc3h7b;;chr7:120351014..120351109,+!p1@Arntl!0.24!21.21!Arntl;;chr1:193961880..193961929,-!p1@Rcor3!0.24!16.74!Rcor3;;chr17:31701694..31701799,+!p1@Pknox1!0.24!16.58!Pknox1;;chr4:102791976..102792008,+!p2@Mier1!0.24!16.58!Mier1;;chr6:47827642..47827707,+!p1@Zfp282!0.24!16.26!Zfp282;;chr6:48395426..48395504,-!p2@Zfp467!0.24!13.87!Zfp467;;chr3:94176733..94176794,+!p1@Rorc!0.24!11.48!Rorc;;chr5:36826883..36826951,-!p1@Tada2b!0.24!11.16!Tada2b;;chrX:137077716..137077734,-!p1@Tsc22d3!0.24!10.68!Tsc22d3;;chr4:120488308..120488366,-!p1@Nfyc!0.24!8.45!Nfyc;;chr3:135354476..135354528,-!p2@Nfkb1!0.24!8.13!Nfkb1;;chr5:65194720..65194738,+!p2@Klf3!0.24!7.81!Klf3;;chr10:20032330..20032345,+!p3@Bclaf1!0.24!6.86!Bclaf1;;chr7:133838869..133838945,+!p2@Bola2!0.24!5.90!Bola2;;chrX:53599567..53599592,+!p1@Zfp449!0.24!5.90!Zfp449;;chr7:26067242..26067273,+!p3@Cic!0.24!5.90!Cic;;chr18:69504123..69504155,+!p5@Tcf4!0.24!4.94!Tcf4;;chr12:3806536..3806571,+!p3@Dnmt3a!0.24!4.94!Dnmt3a;;chr11:50700965..50701027,-!p1@Zfp454!0.24!4.78!Zfp454;;chr9:71959562..71959624,-!p3@Tcf12!0.24!4.62!Tcf12;;chr1:170362437..170362478,-!p5@Pbx1!0.24!4.15!Pbx1;;chr4:133276698..133276743,-!p6@Arid1a!0.24!3.67!Arid1a;;chr4:126703093..126703158,+!p3@Sfpq!0.24!3.67!Sfpq;;chr2:181100223..181100237,+!p4@Zgpat!0.24!3.51!Zgpat;;chr19:5637489..5637500,+!p5@Rela!0.24!3.19!Rela;;chr5:139060915..139060929,-!p3@Zfp68!0.24!3.19!Zfp68;;chr4:154010409..154010466,-!p2@Prdm16!0.24!2.87!Prdm16;;chr17:47278081..47278103,+!p1@Trerf1!0.24!2.87!Trerf1;;chr4:97439519..97439539,+!p11@Nfia!0.24!2.55!Nfia;;chr11:18918982..18918993,-!p5@Meis1!0.24!2.55!Meis1;;chr8:87225702..87225726,+!p3@Lyl1!0.24!2.39!Lyl1;;chr18:55149986..55150009,-!p7@Zfp608!0.24!2.23!Zfp608;;chr2:181327403..181327432,-!p3@Znf512b!0.24!2.23!Znf512b;;chr2:90922554..90922575,+!p4@Sfpi1!0.24!2.07!Sfpi1;;chr6:146744563..146744594,+!p1@Arntl2!0.24!2.07!Arntl2;;chr6:128312772..128312792,+!p2@Foxm1!0.24!1.91!Foxm1;;chr15:50721560..50721572,-!p10@Trps1!0.24!1.91!Trps1;;chr14:65568651..65568657,-!p4@Hmbox1!0.24!1.59!Hmbox1;;chr2:30700788..30700824,+!p2@Prrx2!0.24!1.59!Prrx2;;chr19:10315252..10315266,-!p2@Gm98!0.24!1.59!Gm98;;chr17:46693053..46693064,-!p4@Srf!0.24!1.44!Srf;;chr4:87679181..87679192,-!p10@Mllt3!0.24!1.44!Mllt3;;chr6:115311030..115311065,+!p4@Pparg!0.24!1.44!Pparg;;chr6:16848347..16848391,-!p1@Tfec!0.24!1.28!Tfec;;chr6:72185179..72185196,-!p4@Atoh8!0.24!1.28!Atoh8;;chr8:90483433..90483457,-!p2@Zfp423!0.24!1.28!Zfp423;;chr8:87237692..87237703,-!p12@Nfix!0.24!1.28!Nfix;;chr13:15555555..15555574,+!p5@Gli3!0.24!1.28!Gli3;;chr13:59924409..59924418,-!p6@Zcchc6!0.24!1.28!Zcchc6;;chr8:107793737..107793757,+!p2@Hsf4!0.24!0.96!Hsf4;;chr18:69752598..69752607,+!p26@Tcf4!0.24!0.96!Tcf4;;chr11:98821917..98821934,+!p11@Rara!0.24!0.96!Rara;;chr3:130813557..130813582,+!p5@Lef1!0.24!0.96!Lef1;;chr4:135699731..135699747,+!p1@Id3!0.23!175.72!Id3;;chr5:125343044..125343141,+!p1@Zfp664!0.23!65.54!Zfp664;;chr10:127896346..127896384,+!p1@Smarcc2!0.23!59.95!Smarcc2;;chr14:65568675..65568723,-!p1@Hmbox1!0.23!50.39!Hmbox1;;chr7:30880169..30880211,+!p1@Zfp260!0.23!49.27!Zfp260;;chr5:134790507..134790546,-!p1@Gtf2i!0.23!37.31!Gtf2i;;chr17:4995902..4995959,+!p1@Arid1b!0.23!35.40!Arid1b;;chr18:74427905..74427991,+!p1@Mbd1!0.23!28.54!Mbd1;;chr2:155299524..155299571,-!p1@Ncoa6!0.23!26.79!Ncoa6;;chr4:97444297..97444323,+!p2@Nfia!0.23!22.96!Nfia;;chr11:3189883..3189925,+!p1@Patz1!0.23!20.57!Patz1;;chr18:84758883..84758919,-!p1@Zfp407!0.23!16.26!Zfp407;;chr15:50721588..50721610,-!p1@Trps1!0.23!14.99!Trps1;;chr15:75771454..75771521,+!p1@Zfp623!0.23!13.71!Zfp623;;chr15:99532568..99532636,+!p2@Smarcd1!0.23!13.39!Smarcd1;;chr2:165213745..165213815,-!p1@Zfp334!0.23!12.92!Zfp334;;chr17:88840054..88840081,+!p2@Foxn2!0.23!12.44!Foxn2;;chr7:13551180..13551243,+!p1@Zfp324!0.23!11.96!Zfp324;;chr9:122832168..122832210,+!p1@Zfp105!0.23!11.16!Zfp105;;chr18:84255841..84255883,-!p1@Tshz1!0.23!10.21!Tshz1;;chr12:112088483..112088512,+!p1@Zfp839!0.23!8.29!Zfp839;;chr10:5958538..5958568,+!p1@Zbtb2!0.23!6.22!Zbtb2;;chr1:133904131..133904168,+!p4@Elk4!0.23!5.90!Elk4;;chr2:72817659..72817725,-!p5@Sp3!0.23!5.74!Sp3;;chr17:23004042..23004077,-!p2@Zfp945!0.23!5.10!Zfp945;;chr18:55150011..55150059,-!p3@Zfp608!0.23!4.31!Zfp608;;chr15:76755836..76755867,-!p1@Zfp647!0.23!3.67!Zfp647;;chr3:14578741..14578759,+!p3@E2f5!0.23!3.35!E2f5;;chr18:80348151..80348181,-!p2@Adnp2!0.23!3.19!Adnp2;;chr11:87881818..87881834,+!p4@Vezf1!0.23!3.03!Vezf1;;chr10:80812991..80813004,-!p3@Hmg20b!0.23!2.39!Hmg20b;;chr18:60720468..60720472,+!p2@Rbm22!0.23!2.23!Rbm22;;chr4:108151497..108151514,+!p3@Zcchc11!0.23!2.23!Zcchc11;;chr7:148513574..148513593,-!p5@Deaf1!0.23!2.23!Deaf1;;chr5:24108047..24108106,-!p3@Smarcd3!0.23!1.91!Smarcd3;;chr12:113917014..113917034,+!p1@Zbtb42!0.23!1.91!Zbtb42;;chr15:81633139..81633152,+!p4@Tef!0.23!1.75!Tef;;chr17:69733108..69733129,+!p3@Zfp161!0.23!1.75!Zfp161;;chr2:34227659..34227674,-!p3@Pbx3!0.23!1.59!Pbx3;;chr10:20880698..20880717,-!p3@Myb!0.23!1.59!Myb;;chr11:98605517..98605539,+!p5@Thra!0.23!1.44!Thra;;chr13:29045131..29045159,-!p3@Sox4!0.23!1.44!Sox4;;chr2:92886587..92886622,-!p3@Prdm11!0.23!1.44!Prdm11;;chr3:87329568..87329589,+!p2@Etv3!0.23!1.28!Etv3;;chr11:18918406..18918431,-!p6@Meis1!0.23!1.28!Meis1;;chr7:16760434..16760453,+!p2@LOC100046899,p2@Meis3!0.23!1.28!Meis3;;chr1:120950197..120950215,-!p5@Gli2!0.23!1.28!Gli2;;chr2:77654815..77654872,-!p2@Zfp385b!0.23!1.12!Zfp385b;;chr7:123177377..123177409,-!p7@Sox6!0.23!1.12!Sox6;;chr14:22808697..22808715,-!p4@Zfp503!0.23!0.96!Zfp503;;chrX:137077134..137077143,-!p10@Tsc22d3!0.23!0.80!Tsc22d3;;chr16:15887371..15887385,+!p1@Cebpd!0.22!51.03!Cebpd;;chr15:57907747..57907798,-!p1@9130401M01Rik,p1@Zhx1!0.22!39.23!Zhx1;;chr15:81641878..81641921,+!p1@Tef!0.22!38.59!Tef;;chr2:18314363..18314465,-!p1@Dnajc1!0.22!36.83!Dnajc1;;chr12:32635078..32635111,-!p1@Hbp1!0.22!31.73!Hbp1;;chr17:28487692..28487765,-!p1@Tead3!0.22!29.50!Tead3;;chr18:70728080..70728160,+!p2@Mbd2!0.22!28.54!Mbd2;;chr10:80599279..80599353,+!p1@Zbtb7a!0.22!26.47!Zbtb7a;;chr10:41996494..41996549,-!p1@Foxo3!0.22!25.03!Foxo3;;chr2:75542592..75542609,-!p2@Nfe2l2!0.22!25.03!Nfe2l2;;chr6:118429255..118429336,-!p1@Zfp9!0.22!23.60!Zfp9;;chr8:81923316..81923334,-!p1@Smad1!0.22!22.96!Smad1;;chr11:97524509..97524595,+!p1@Mllt6!0.22!17.38!Mllt6;;chr4:87679232..87679277,-!p1@Mllt3!0.22!16.90!Mllt3;;chr5:138596922..138596968,-!p1@Zfp113!0.22!14.35!Zfp113;;chr7:28645585..28645659,+!p1@Zfp607!0.22!13.87!Zfp607;;chr13:67784412..67784499,-!p1@Zfp738!0.22!13.23!Zfp738;;chr7:88005795..88005858,+!p1@Zscan2!0.22!10.05!Zscan2;;chr2:164860321..164860359,-!p2@Ncoa5!0.22!9.73!Ncoa5;;chr17:48061409..48061431,-!p4@Foxp4!0.22!7.18!Foxp4;;chr8:72520162..72520197,-!p4@Gatad2a!0.22!7.02!Gatad2a;;chr1:39250584..39250643,+!p1@Npas2!0.22!6.86!Npas2;; | |||
|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316,FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 67: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|id=FF:750-23E6 | |||
|is_a=EFO:0002091;;FF:0011415 | |||
|is_obsolete= | |||
|library_id=CNhs11219 | |||
|library_id_phase_based=2:CNhs11219 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;750 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;750 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N10.CNhs11219.750-23E6.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N10.CNhs11219.750-23E6.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N10.CNhs11219.750-23E6.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N10.CNhs11219.750-23E6.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N10.CNhs11219.750-23E6.mm9.nobarcode.rdna.fa.gz | |||
|name=lung, neonate N10 | |||
|namespace=FANTOM5 | |||
|part_of=UBERON:0000170 | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11219,LSID748,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|repeat_enrich_byfamily=0.329449241723361,0.00335990098318533,0,0,0.120215008744062,0.0554633068225836,0.538240292912614,0,0.134133623896624,0,0,-0.0200854292988759,0,0,0,0,0,0,0.165209854875045,0,0,0,0,0.0642538110976656,0,0,0.00641156227935658,0,0,0,0,0,0.431472317092385,0,0,0,0.0642538110976656,0.0574588720647777,0.114994175110339,0.0967677439232475,0.170460930469459,0.0397521000461313,-0.149653629266289,0,0,0,0,0,0,0,0,0,0,0.0642538110976656,0,0.29109765819418,0,0,0,0,0.0642538110976656,0,0.084890734139607,0.0209571497647803,0.0642538110976656,0.0642538110976656,0.106598544984697,0.176899465006684,0.0561748819856333,0.121093509229355,0,0.120215008744062,0.111367894623628,0.117742137512268,0,0,0.125743641277358,0.0805167337209278,-0.0654818881686037,-0.0145777837422418,0,0,0,0,0,0.0642538110976656,-0.11427619969338,-0.224884895995008,-0.124804763719761,0,0,0,0,0 | |||
|rna_box=23 | |||
|rna_catalog_number= | |||
|rna_concentration= | |||
|rna_extraction_protocol= | |||
|rna_lot_number= | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=E6 | |||
|rna_rin= | |||
|rna_sample_type= | |||
|rna_tube_id=2.30E+07 | |||
|rna_weight_ug= | |||
|sample_age= | |||
|sample_category=developmental | |||
|sample_cell_catalog= | |||
|sample_cell_line= | |||
|sample_cell_lot= | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company= | |||
|sample_description= | |||
|sample_dev_stage=10 days neonate | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_id=750 | |||
|sample_note= | |||
|sample_sex=mixture | |||
|sample_species=Mouse (Mus musculus) | |||
|sample_strain=C57BL/6J | |||
|sample_tissue=lung | |||
|top_motifs=EBF1:2.57513324218;IKZF1:2.12274976131;HBP1_HMGB_SSRP1_UBTF:2.11023874267;BPTF:2.09431225982;FOX{I1,J2}:2.06156459015;IKZF2:1.99473325958;NKX3-1:1.85734239705;EP300:1.82558249919;NKX2-1,4:1.75028924214;FOXO1,3,4:1.69451680172;XCPE1{core}:1.60955205527;FOX{D1,D2}:1.54399986243;SOX5:1.54342532695;FOXN1:1.53270201237;ZNF384:1.50922063298;SP1:1.49113293244;TEAD1:1.39293183766;NFATC1..3:1.37496476731;GTF2A1,2:1.36376977989;TOPORS:1.34782781696;TFAP2B:1.30139843727;TLX1..3_NFIC{dimer}:1.27037439818;TFCP2:1.22310807643;ZNF238:1.18657233726;MYBL2:1.12172649047;MAZ:1.11866072525;SPIB:1.0925320945;GZF1:1.06021073268;RXR{A,B,G}:1.05843720043;IRF1,2:1.02805147117;FOXQ1:0.977701064498;TFDP1:0.961774045292;ETS1,2:0.930989204311;GATA4:0.881288562237;TLX2:0.881161344295;FOXP1:0.850901392827;SRF:0.839663140377;PATZ1:0.827819587497;TFAP4:0.826670713034;GTF2I:0.791713649796;TFAP2{A,C}:0.79119250059;GLI1..3:0.741909153364;HIC1:0.73165729665;NKX6-1,2:0.730744651294;RREB1:0.691548697853;PRDM1:0.676051821677;GCM1,2:0.661697931586;NFIX:0.638983489989;ALX1:0.634734350395;SOX2:0.624089414231;STAT1,3:0.598368238004;STAT2,4,6:0.59782151362;TGIF1:0.529985715559;RXRA_VDR{dimer}:0.519920797905;ZNF148:0.504640423239;ELF1,2,4:0.493050879598;SPI1:0.463353405119;TEF:0.433086072762;HAND1,2:0.432157040565;NKX2-2,8:0.431472502587;MTF1:0.426703583559;EGR1..3:0.425716732781;T:0.421471461535;RBPJ:0.412254391068;RFX2..5_RFXANK_RFXAP:0.412252729344;PAX4:0.411090779999;PITX1..3:0.403139443206;DBP:0.399459916949;NFIL3:0.36809790815;PAX5:0.358086528571;ZIC1..3:0.357118924185;MTE{core}:0.340447671798;TBX4,5:0.307086267891;SPZ1:0.288671082605;HMGA1,2:0.278050098873;MEF2{A,B,C,D}:0.272427586478;FOXA2:0.242148083279;ZFP161:0.232815113158;MED-1{core}:0.231202090546;LEF1_TCF7_TCF7L1,2:0.226731286539;DMAP1_NCOR{1,2}_SMARC:0.224650741174;CEBPA,B_DDIT3:0.220424821319;ESR1:0.199935544969;MZF1:0.195506207609;GFI1:0.192200993656;ZBTB16:0.174968599891;NKX2-3_NKX2-5:0.169262268036;FOX{F1,F2,J1}:0.146461887878;ALX4:0.137378320403;SMAD1..7,9:0.123621655023;POU5F1:0.11830171969;NFKB1_REL_RELA:0.106430885292;GATA6:0.0860749877604;IRF7:0.0705635235846;NR1H4:0.0544401081924;SOX{8,9,10}:0.050558695242;NR3C1:0.0420695589602;FOXD3:0.019495269505;CRX:0.00891211823826;JUN:-0.00696624781153;ZEB1:-0.0203990629798;MYFfamily:-0.0433069606507;CDC5L:-0.0536117984202;RFX1:-0.0544452331007;TBP:-0.0594996257157;BACH2:-0.0830943923065;KLF4:-0.0925246963104;POU3F1..4:-0.0984575074927;E2F1..5:-0.102938873265;SNAI1..3:-0.111274912099;NKX3-2:-0.115948462627;TP53:-0.125468452516;STAT5{A,B}:-0.130160342309;HIF1A:-0.13699568229;BREu{core}:-0.141156364603;FOS_FOS{B,L1}_JUN{B,D}:-0.14125323009;PPARG:-0.145856646716;RUNX1..3:-0.158573779834;ZNF423:-0.19691121411;GFI1B:-0.19787754247;FOSL2:-0.215468630371;POU1F1:-0.222194942867;POU2F1..3:-0.226441006312;SOX17:-0.228075496309;ZBTB6:-0.234300723834;CDX1,2,4:-0.267395044314;ATF2:-0.278734731242;REST:-0.310858177897;HNF1A:-0.329481878645;NHLH1,2:-0.365038043927;EVI1:-0.370612219864;HLF:-0.396177704001;PRRX1,2:-0.423852688395;HNF4A_NR2F1,2:-0.426432816975;AIRE:-0.435366205116;ONECUT1,2:-0.438507896254;NFE2L2:-0.440943172631;NR6A1:-0.444159987585;MYB:-0.467172689789;FOXP3:-0.49452374867;PDX1:-0.497423199769;CUX2:-0.508261894765;AR:-0.51016083824;NANOG:-0.526166762304;PBX1:-0.533286356089;CREB1:-0.591079249173;PAX1,9:-0.618995529568;FOXL1:-0.626072707469;HMX1:-0.629100653423;UFEwm:-0.647921498836;NFE2L1:-0.656795003667;bHLH_family:-0.662195714535;PAX6:-0.682853877556;ADNP_IRX_SIX_ZHX:-0.733707138639;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.738118996041;MAFB:-0.751951061888;RORA:-0.773073866831;POU6F1:-0.782002494715;ATF4:-0.789080156312;ATF6:-0.817042534982;ELK1,4_GABP{A,B1}:-0.819830852719;FOXM1:-0.821131928013;LMO2:-0.82911039732;SREBF1,2:-0.847871514761;NRF1:-0.853109879178;NANOG{mouse}:-0.856360196894;MYOD1:-0.872765928862;AHR_ARNT_ARNT2:-0.874600246692;ATF5_CREB3:-0.897110089788;NFE2:-0.974661291846;HOXA9_MEIS1:-1.03355915377;HOX{A4,D4}:-1.05971209457;TAL1_TCF{3,4,12}:-1.06275393878;HOX{A5,B5}:-1.11736077656;LHX3,4:-1.12007342267;VSX1,2:-1.12952942763;NFY{A,B,C}:-1.14024291015;EN1,2:-1.14081929735;PAX8:-1.24571477777;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.24722123145;PAX2:-1.25248591843;HSF1,2:-1.25982595944;NR5A1,2:-1.28464330156;ZNF143:-1.31744724871;ESRRA:-1.37199138554;ARID5B:-1.44068218926;OCT4_SOX2{dimer}:-1.63930153104;HES1:-1.81782740394;YY1:-2.12962756239 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:750-23E6;search_select_hide=table117:750-23E6 | |||
}} | }} |
Latest revision as of 19:20, 4 June 2020
Name: | lung, neonate N10 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11219 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11219
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.0643 |
1001 | 0.165 |
1002 | -0.0845 |
1003 | 0.184 |
1004 | 0 |
1005 | 0.0813 |
1006 | 0.149 |
1007 | 0.103 |
1008 | 0 |
1009 | 0.415 |
101 | -0.0689 |
1010 | 0 |
1011 | -0.0835 |
1012 | 0.0643 |
1013 | 0.0055 |
1014 | 0.0847 |
1015 | 0.058 |
1016 | 0.352 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0.0156 |
1022 | 0.0109 |
1023 | 0 |
1024 | 0.562 |
1025 | 1.22 |
1026 | 0 |
1027 | 0.00328 |
1028 | 0 |
1029 | 0.455 |
103 | 0.228 |
1030 | 0.255 |
1031 | 0.533 |
1032 | 0.0856 |
1033 | -0.0752 |
1034 | 0.12 |
1035 | 0.0643 |
1036 | -0.194 |
1037 | 0 |
1038 | 0.698 |
1039 | -0.0641 |
104 | 0 |
1040 | 0.522 |
1041 | 0.255 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11219
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11219
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.176 |
10 | 10 | 0.0512 |
100 | 100 | 0.187 |
101 | 101 | 0.721 |
102 | 102 | 0.839 |
103 | 103 | 0.295 |
104 | 104 | 0.774 |
105 | 105 | 0.416 |
106 | 106 | 0.0846 |
107 | 107 | 0.00872 |
108 | 108 | 0.638 |
109 | 109 | 0.3 |
11 | 11 | 0.107 |
110 | 110 | 0.125 |
111 | 111 | 0.0628 |
112 | 112 | 0.882 |
113 | 113 | 0.875 |
114 | 114 | 0.161 |
115 | 115 | 0.369 |
116 | 116 | 0.275 |
117 | 117 | 0.0125 |
118 | 118 | 0.302 |
119 | 119 | 0.965 |
12 | 12 | 0.496 |
120 | 120 | 0.131 |
121 | 121 | 0.168 |
122 | 122 | 0.596 |
123 | 123 | 0.991 |
124 | 124 | 0.586 |
125 | 125 | 0.672 |
126 | 126 | 0.691 |
127 | 127 | 0.196 |
128 | 128 | 0.0563 |
129 | 129 | 0.812 |
13 | 13 | 0.891 |
130 | 130 | 0.0344 |
131 | 131 | 0.0886 |
132 | 132 | 0.438 |
133 | 133 | 0.366 |
134 | 134 | 0.777 |
135 | 135 | 0.359 |
136 | 136 | 0.871 |
137 | 137 | 0.44 |
138 | 138 | 0.0957 |
139 | 139 | 0.237 |
14 | 14 | 0.732 |
140 | 140 | 0.998 |
141 | 141 | 0.749 |
142 | 142 | 0.82 |
143 | 143 | 0.457 |
144 | 144 | 0.792 |
145 | 145 | 0.923 |
146 | 146 | 0.942 |
147 | 147 | 0.389 |
148 | 148 | 0.82 |
149 | 149 | 0.371 |
15 | 15 | 0.376 |
150 | 150 | 0.326 |
151 | 151 | 0.728 |
152 | 152 | 0.0389 |
153 | 153 | 0.542 |
154 | 154 | 0.685 |
155 | 155 | 0.664 |
156 | 156 | 0.4 |
157 | 157 | 0.713 |
158 | 158 | 0.879 |
159 | 159 | 0.0413 |
160 | 160 | 0.498 |
161 | 161 | 0.713 |
162 | 162 | 0.287 |
163 | 163 | 0.714 |
164 | 164 | 0.493 |
165 | 165 | 0.19 |
166 | 166 | 0.0782 |
167 | 167 | 0.521 |
168 | 168 | 0.748 |
169 | 169 | 0.462 |
17 | 17 | 0.483 |
18 | 18 | 0.00632 |
19 | 19 | 0.295 |
2 | 2 | 0.33 |
20 | 20 | 0.378 |
21 | 21 | 0.915 |
22 | 22 | 0.495 |
23 | 23 | 0.221 |
24 | 24 | 0.761 |
25 | 25 | 0.0479 |
26 | 26 | 0.507 |
27 | 27 | 0.543 |
28 | 28 | 0.836 |
29 | 29 | 0.0364 |
3 | 3 | 0.223 |
30 | 30 | 0.565 |
31 | 31 | 0.466 |
32 | 32 | 0.299 |
33 | 33 | 0.448 |
34 | 34 | 0.462 |
35 | 35 | 0.0107 |
36 | 36 | 0.186 |
37 | 37 | 0.739 |
38 | 38 | 0.629 |
39 | 39 | 0.174 |
4 | 4 | 0.782 |
40 | 40 | 0.777 |
41 | 41 | 0.292 |
42 | 42 | 0.534 |
43 | 43 | 0.995 |
44 | 44 | 0.0303 |
45 | 45 | 0.253 |
46 | 46 | 0.314 |
47 | 47 | 0.245 |
48 | 48 | 0.176 |
49 | 49 | 0.416 |
5 | 5 | 0.71 |
50 | 50 | 0.341 |
51 | 51 | 0.828 |
52 | 52 | 0.0886 |
53 | 53 | 0.582 |
54 | 54 | 0.948 |
55 | 55 | 0.666 |
56 | 56 | 0.884 |
57 | 57 | 0.175 |
58 | 58 | 0.646 |
59 | 59 | 0.62 |
6 | 6 | 0.636 |
60 | 60 | 0.246 |
61 | 61 | 0.743 |
62 | 62 | 0.195 |
63 | 63 | 0.91 |
64 | 64 | 0.12 |
65 | 65 | 0.958 |
66 | 66 | 0.166 |
67 | 67 | 0.865 |
68 | 68 | 0.33 |
69 | 69 | 0.21 |
7 | 7 | 0.687 |
70 | 70 | 0.0679 |
71 | 71 | 0.0641 |
72 | 72 | 0.441 |
73 | 73 | 0.989 |
74 | 74 | 0.915 |
75 | 75 | 0.0271 |
76 | 76 | 0.613 |
77 | 77 | 0.425 |
78 | 78 | 0.192 |
79 | 79 | 0.982 |
8 | 8 | 0.0496 |
80 | 80 | 0.451 |
81 | 81 | 0.0567 |
82 | 82 | 0.414 |
83 | 83 | 0.854 |
84 | 84 | 0.862 |
85 | 85 | 0.952 |
86 | 86 | 0.692 |
87 | 87 | 0.0043 |
88 | 88 | 0.728 |
89 | 89 | 0.378 |
9 | 9 | 0.424 |
90 | 90 | 0.00693 |
91 | 91 | 0.576 |
92 | 92 | 0.827 |
93 | 93 | 0.577 |
94 | 94 | 0.269 |
95 | 95 | 0.45 |
96 | 96 | 0.106 |
97 | 97 | 0.581 |
98 | 98 | 0.272 |
99 | 99 | 0.595 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11219
FANTOM5 (FF) ontology
Direct parent terms
part_of relathionship
UBERON:0000170 pair of lungs
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000305 (mouse neonate N10 sample)
0011415 (mouse lung- neonate N10 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)