FF:645-26G9: Difference between revisions

Latest revision as of 19:19, 4 June 2020

Name:	pancreas, neonate N00
Species:	Mouse (Mus musculus)
Library ID:	CNhs11105
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	pancreas
dev stage	0 day neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005164

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11105		CAGE		DRX009060		DRR009934

Accession ID Mm9

Library id		BAM		CTSS
CNhs11105		DRZ001359		DRZ002742

Accession ID Mm10

Library id		BAM		CTSS
CNhs11105		DRZ012709		DRZ014092

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11105

0	0
1	0
10	0
100	0
1000	0.0272
1001	-0.0596
1002	0.0484
1003	-0.0457
1004	0
1005	0
1006	-0.0453
1007	0.098
1008	0
1009	0.16
101	0.0366
1010	0.249
1011	-0.0837
1012	0
1013	0.213
1014	0.319
1015	-0.0489
1016	0.0881
1017	0
1018	0.133
1019	0
102	0
1020	0
1021	0
1022	0.172
1023	0
1024	0
1025	0.426
1026	0
1027	0
1028	0
1029	0.0821
103	0.181
1030	0
1031	0.178
1032	0.132
1033	0
1034	0.33
1035	0
1036	0.0406
1037	0
1038	0.0786
1039	0.0288
104	0
1040	0.163
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11105

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.755
MA0003.1	MA0003.1	0.205
MA0004.1	MA0004.1	0.733
MA0006.1	MA0006.1	0.0197
MA0007.1	MA0007.1	0.138
MA0009.1	MA0009.1	0.974
MA0014.1	MA0014.1	0.736
MA0017.1	MA0017.1	9.21128e-16
MA0018.2	MA0018.2	0.00892
MA0019.1	MA0019.1	0.227
MA0024.1	MA0024.1	0.00845
MA0025.1	MA0025.1	0.417
MA0027.1	MA0027.1	0.336
MA0028.1	MA0028.1	0.0447
MA0029.1	MA0029.1	0.489
MA0030.1	MA0030.1	0.251
MA0031.1	MA0031.1	0.16
MA0035.2	MA0035.2	3.68645e-5
MA0038.1	MA0038.1	0.953
MA0039.2	MA0039.2	0.00111
MA0040.1	MA0040.1	0.844
MA0041.1	MA0041.1	0.966
MA0042.1	MA0042.1	0.426
MA0043.1	MA0043.1	0.105
MA0046.1	MA0046.1	3.08617e-64
MA0047.2	MA0047.2	2.82087e-5
MA0048.1	MA0048.1	0.674
MA0050.1	MA0050.1	8.37301e-6
MA0051.1	MA0051.1	0.00206
MA0052.1	MA0052.1	0.00447
MA0055.1	MA0055.1	0.535
MA0057.1	MA0057.1	0.383
MA0058.1	MA0058.1	0.652
MA0059.1	MA0059.1	0.874
MA0060.1	MA0060.1	0.335
MA0061.1	MA0061.1	0.95
MA0062.2	MA0062.2	0.0286
MA0065.2	MA0065.2	3.08493e-5
MA0066.1	MA0066.1	0.897
MA0067.1	MA0067.1	0.494
MA0068.1	MA0068.1	0.196
MA0069.1	MA0069.1	0.0647
MA0070.1	MA0070.1	0.864
MA0071.1	MA0071.1	0.169
MA0072.1	MA0072.1	0.43
MA0073.1	MA0073.1	0.862
MA0074.1	MA0074.1	0.0715
MA0076.1	MA0076.1	0.0467
MA0077.1	MA0077.1	0.559
MA0078.1	MA0078.1	0.419
MA0079.2	MA0079.2	0.0191
MA0080.2	MA0080.2	0.156
MA0081.1	MA0081.1	0.301
MA0083.1	MA0083.1	0.77
MA0084.1	MA0084.1	0.361
MA0087.1	MA0087.1	0.791
MA0088.1	MA0088.1	0.598
MA0090.1	MA0090.1	0.0636
MA0091.1	MA0091.1	0.222
MA0092.1	MA0092.1	0.324
MA0093.1	MA0093.1	0.695
MA0099.2	MA0099.2	0.132
MA0100.1	MA0100.1	4.96694e-4
MA0101.1	MA0101.1	0.684
MA0102.2	MA0102.2	0.477
MA0103.1	MA0103.1	6.9336e-5
MA0104.2	MA0104.2	0.138
MA0105.1	MA0105.1	0.276
MA0106.1	MA0106.1	0.542
MA0107.1	MA0107.1	0.508
MA0108.2	MA0108.2	0.00158
MA0111.1	MA0111.1	0.988
MA0112.2	MA0112.2	0.0984
MA0113.1	MA0113.1	0.691
MA0114.1	MA0114.1	1.03194e-20
MA0115.1	MA0115.1	4.4702e-4
MA0116.1	MA0116.1	0.0606
MA0117.1	MA0117.1	0.768
MA0119.1	MA0119.1	0.487
MA0122.1	MA0122.1	0.801
MA0124.1	MA0124.1	0.552
MA0125.1	MA0125.1	0.552
MA0131.1	MA0131.1	0.716
MA0135.1	MA0135.1	0.0115
MA0136.1	MA0136.1	0.972
MA0137.2	MA0137.2	0.00891
MA0138.2	MA0138.2	0.56
MA0139.1	MA0139.1	0.423
MA0140.1	MA0140.1	0.00254
MA0141.1	MA0141.1	0.154
MA0142.1	MA0142.1	0.119
MA0143.1	MA0143.1	0.263
MA0144.1	MA0144.1	8.92654e-4
MA0145.1	MA0145.1	0.0034
MA0146.1	MA0146.1	0.218
MA0147.1	MA0147.1	0.201
MA0148.1	MA0148.1	1.83212e-7
MA0149.1	MA0149.1	0.169
MA0150.1	MA0150.1	0.981
MA0152.1	MA0152.1	0.537
MA0153.1	MA0153.1	5.1291e-32
MA0154.1	MA0154.1	0.0733
MA0155.1	MA0155.1	0.054
MA0156.1	MA0156.1	0.328
MA0157.1	MA0157.1	0.0761
MA0159.1	MA0159.1	0.67
MA0160.1	MA0160.1	0.194
MA0162.1	MA0162.1	0.676
MA0163.1	MA0163.1	0.237
MA0164.1	MA0164.1	0.224
MA0258.1	MA0258.1	0.579
MA0259.1	MA0259.1	0.247

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11105

Novel motif	Logo	P-value
1	1	0.873
10	10	0.381
100	100	0.474
101	101	0.533
102	102	0.472
103	103	0.486
104	104	0.707
105	105	0.243
106	106	0.00921
107	107	0.0196
108	108	0.601
109	109	0.225
11	11	0.706
110	110	1
111	111	0.344
112	112	0.102
113	113	0.412
114	114	0.9
115	115	0.619
116	116	0.274
117	117	0.447
118	118	0.364
119	119	0.374
12	12	0.254
120	120	0.383
121	121	0.506
122	122	0.297
123	123	0.633
124	124	0.229
125	125	0.213
126	126	0.234
127	127	0.958
128	128	0.331
129	129	0.339
13	13	0.00187
130	130	0.995
131	131	0.213
132	132	0.511
133	133	0.559
134	134	0.313
135	135	0.548
136	136	0.0033
137	137	0.236
138	138	0.00686
139	139	0.402
14	14	0.696
140	140	0.411
141	141	0.389
142	142	0.189
143	143	0.204
144	144	0.733
145	145	0.425
146	146	0.119
147	147	0.291
148	148	0.0315
149	149	0.309
15	15	0.945
150	150	0.337
151	151	0.785
152	152	0.00282
153	153	0.535
154	154	0.566
155	155	0.844
156	156	2.80409e-4
157	157	0.042
158	158	0.624
159	159	0.662
160	160	0.219
161	161	0.414
162	162	0.968
163	163	0.208
164	164	0.965
165	165	0.977
166	166	0.496
167	167	0.11
168	168	0.0673
169	169	0.0833
17	17	0.224
18	18	0.1
19	19	0.063
2	2	0.0407
20	20	0.336
21	21	0.73
22	22	0.188
23	23	0.271
24	24	0.38
25	25	0.699
26	26	0.0714
27	27	0.584
28	28	0.542
29	29	0.33
3	3	0.9
30	30	0.101
31	31	0.533
32	32	0.231
33	33	0.301
34	34	0.513
35	35	0.139
36	36	0.727
37	37	0.0745
38	38	0.461
39	39	0.15
4	4	0.212
40	40	0.401
41	41	0.11
42	42	0.909
43	43	0.704
44	44	0.72
45	45	0.0606
46	46	0.844
47	47	0.715
48	48	0.816
49	49	0.834
5	5	0.519
50	50	0.209
51	51	0.981
52	52	0.0359
53	53	0.538
54	54	0.812
55	55	0.0522
56	56	0.508
57	57	0.0702
58	58	0.908
59	59	0.123
6	6	0.905
60	60	0.0295
61	61	0.602
62	62	0.54
63	63	0.428
64	64	0.854
65	65	0.519
66	66	0.984
67	67	0.358
68	68	0.384
69	69	0.959
7	7	0.121
70	70	0.934
71	71	0.917
72	72	0.933
73	73	0.0523
74	74	0.517
75	75	0.832
76	76	0.0955
77	77	0.0585
78	78	0.386
79	79	0.954
8	8	0.781
80	80	0.603
81	81	0.607
82	82	0.924
83	83	0.731
84	84	0.433
85	85	0.223
86	86	0.427
87	87	0.0288
88	88	0.452
89	89	0.684
9	9	0.737
90	90	0.597
91	91	0.349
92	92	0.278
93	93	0.921
94	94	0.0556
95	95	0.518
96	96	0.0238
97	97	0.0331
98	98	0.693
99	99	0.256

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11105

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011266 mouse pancreas- neonate N00 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000304 (mouse neonate N0 sample)
0011266 (mouse pancreas- neonate N00 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005164
+|accession_numbers=CAGE;DRX009060;DRR009934;DRZ001359;DRZ002742;DRZ012709;DRZ014092
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!2.19!154.28!Rbpjl;;chr2:19367259..19367278,+!p1@Ptf1a!1.83!65.90!Ptf1a;;chr10:80555320..80555378,-!p1@Creb3l3!1.81!73.14!Creb3l3;;chr5:144951153..144951203,+!p1@Bhlha15!1.75!78.56!Bhlha15;;chr9:74709695..74709722,+!p1@Onecut1!1.64!42.90!Onecut1;;chr10:88969376..88969395,-!p1@Nr1h4!1.52!31.79!Nr1h4;;chr5:148118639..148118715,-!p1@Cdx2!1.44!26.62!Cdx2;;chr3:3634145..3634161,+!p1@Hnf4g!1.41!24.55!Hnf4g;;chr17:27865882..27865901,-!p1@Spdef!1.39!23.78!Spdef;;chr10:61595830..61595846,+!p1@Neurog3!1.36!21.97!Neurog3;;chr16:38294860..38294924,-!p1@Nr1i2!1.36!21.71!Nr1i2;;chr7:19608891..19608895,-!p1@Foxa3!1.33!26.36!Foxa3;;chr2:79296783..79296801,-!p1@Neurod1!1.32!19.90!Neurod1;;chr2:163332558..163332596,+!p2@Hnf4a!1.29!18.35!Hnf4a;;chr11:83664365..83664383,+!p1@Hnf1b!1.26!17.31!Hnf1b;;chr2:103143336..103143367,-!p1@Ehf!1.24!26.10!Ehf;;chr1:138846009..138846038,-!p3@Nr5a2!1.20!16.80!Nr5a2;;chrX:45245679..45245702,-!p1@Smarca1!1.15!58.92!Smarca1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.14!12.92!Nkx2-3;;chr8:59799772..59799789,+!p1@Hand2!1.13!36.18!Hand2;;chr7:6649134..6649167,-!p1@Zim1!1.12!66.42!Zim1;;chr2:147871627..147871641,-!p1@Foxa2!1.12!12.15!Foxa2;;chr14:63864056..63864102,-!p1@Gata4!1.10!20.16!Gata4;;chr2:180069370..180069409,-!p1@Gata5!1.09!13.44!Gata5;;chr2:163372884..163372904,+!p1@Hnf4a!1.08!11.11!Hnf4a;;chr10:80555398..80555409,-!p2@Creb3l3!1.05!10.34!Creb3l3;;chr1:138857076..138857105,-!p1@Nr5a2!1.04!10.08!Nr5a2;;chr1:137155026..137155042,-!p1@Elf3!1.03!57.11!Elf3;;chr3:30039329..30039355,-!p5@Mecom!1.03!9.82!Mecom;;chr4:133109285..133109308,+!p1@Nr0b2!1.01!9.30!Nr0b2;;chr14:63890545..63890560,-!p5@Gata4!1.01!9.30!Gata4;;chr7:17647736..17647772,-!p1@Hif3a!1.00!32.82!Hif3a;;chr5:148081686..148081715,+!p1@Pdx1!0.99!8.79!Pdx1;;chr10:12810631..12810649,+!p1@Plagl1!0.96!216.56!Plagl1;;chr13:117099847..117099907,-!p1@Isl1!0.96!15.25!Isl1;;chr1:138857048..138857071,-!p2@Nr5a2!0.94!7.75!Nr5a2;;chr5:135582751..135582788,+!p1@Mlxipl!0.93!31.01!Mlxipl;;chr2:104966766..104966786,+!p1@Wt1!0.91!11.63!Wt1;;chr18:64499674..64499696,+!p1@Onecut2!0.88!11.63!Onecut2;;chr11:5420655..5420659,+!p3@Xbp1!0.87!6.46!Xbp1;;chr18:64499706..64499721,+!p2@Onecut2!0.86!9.04!Onecut2;;chr8:77396591..77396639,+!p1@Isx!0.86!6.20!Isx;;chr1:138845748..138845766,-!p4@Nr5a2!0.85!8.01!Nr5a2;;chr10:22539932..22539956,-!p1@Tcf21!0.84!16.80!Tcf21;;chr9:48644037..48644067,-!p2@Zbtb16!0.83!15.25!Zbtb16;;chr1:138846047..138846074,-!p5@Nr5a2!0.83!6.20!Nr5a2;;chr3:3508024..3508069,+!p2@Hnf4g!0.83!5.69!Hnf4g;;chr1:173144144..173144176,+!p1@Nr1i3!0.79!5.17!Nr1i3;;chr1:138846079..138846103,-!p6@Nr5a2!0.79!5.17!Nr5a2;;chr18:61195843..61195864,-!p2@Cdx1!0.79!5.17!Cdx1;;chr8:77397095..77397127,+!p2@Isx!0.79!5.17!Isx;;chr5:148081722..148081744,+!p2@Pdx1!0.79!5.17!Pdx1;;chr19:37509324..37509337,+!p1@Hhex!0.77!38.25!Hhex;;chr8:123608252..123608268,+!p1@Foxf1a!0.77!7.49!Foxf1a;;chr1:165219345..165219366,-!p7@Prrx1!0.77!4.91!Prrx1;;chr7:148452314..148452329,-!p1@Irf7!0.76!36.18!Irf7;;chr6:39068163..39068176,-!p2@Parp12!0.75!9.30!Parp12;;chr3:30408384..30408431,-!p4@Mecom!0.75!5.94!Mecom;;chr2:105509045..105509071,+!p1@Pax6!0.75!4.65!Pax6;;chr2:103264213..103264233,+!p1@Elf5!0.75!4.65!Elf5;;chrX:45245644..45245666,-!p2@Smarca1!0.73!15.51!Smarca1;;chr14:63890491..63890516,-!p2@Gata4!0.73!4.39!Gata4;;chr19:10315179..10315241,-!p1@Gm98!0.72!50.14!Gm98;;chr18:11052485..11052508,+!p2@Gata6!0.72!13.18!Gata6;;chr4:154010918..154010931,-!p1@Prdm16!0.71!13.44!Prdm16;;chr2:147019977..147019985,-!p2@Nkx2-2!0.71!4.13!Nkx2-2;;chr14:63890519..63890539,-!p3@Gata4!0.71!4.13!Gata4;;chr5:125538737..125538781,-!p2@Ncor2!0.70!16.02!Ncor2;;chr3:94176733..94176794,+!p1@Rorc!0.69!34.37!Rorc;;chr13:48758358..48758415,+!p2@Barx1!0.69!3.88!Barx1;;chr1:173144100..173144138,+!p2@Nr1i3!0.69!3.88!Nr1i3;;chr2:103123925..103123959,-!p3@Ehf!0.69!3.88!Ehf;;chr1:138857112..138857130,-!p7@Nr5a2!0.69!3.88!Nr5a2;;chr19:45225149..45225186,+!p1@Tlx1!0.69!3.88!Tlx1;;chr10:126778916..126778974,-!p1@Gli1!0.68!9.30!Gli1;;chr6:52154414..52154462,-!p1@Hoxa5!0.68!5.43!Hoxa5;;chr7:52471143..52471186,+!p1@Tead2!0.67!44.97!Tead2;;chr18:11052456..11052477,+!p3@Gata6!0.67!12.66!Gata6;;chr5:148081667..148081678,+!p3@Pdx1!0.66!3.62!Pdx1;;chr6:30908793..30908815,-!p1@Klf14!0.66!3.62!Klf14;;chr9:59796270..59796294,-!p4@Nr2e3!0.66!3.62!Nr2e3;;chr2:103143315..103143328,-!p2@Ehf!0.66!3.62!Ehf;;chr1:194979315..194979359,+!p1@Irf6!0.65!24.55!Irf6;;chr2:160192793..160192809,-!p1@Mafb!0.64!59.70!Mafb;;chr18:11052642..11052659,+!p1@Gata6!0.64!19.90!Gata6;;chr1:4483679..4483695,-!p1@Sox17!0.64!18.35!Sox17;;chr6:90412582..90412601,+!p1@Klf15!0.64!18.35!Klf15;;chr6:72849280..72849297,-!p6@Kcmf1!0.64!7.24!Kcmf1;;chr2:163372869..163372882,+!p3@Hnf4a!0.64!3.36!Hnf4a;;chr9:74714281..74714296,+!p5@Onecut1!0.64!3.36!Onecut1;;chr12:30213247..30213333,+!p1@Myt1l!0.64!3.36!Myt1l;;chr14:63890459..63890484,-!p4@Gata4!0.64!3.36!Gata4;;chr4:55545337..55545357,-!p1@Klf4!0.62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oxp1!0.36!1.29!Foxp1;;chr6:52664439..52664461,+!p4@Tax1bp1!0.36!1.29!Tax1bp1;;chr6:99216360..99216372,-!p8@Foxp1!0.36!1.29!Foxp1;;chr7:122989594..122989626,-!p1@Sox6!0.36!1.29!Sox6;;chr11:83666422..83666446,+!p4@Hnf1b!0.36!1.29!Hnf1b;;chr10:80555285..80555291,-!p4@Creb3l3!0.36!1.29!Creb3l3;;chr12:39510206..39510249,+!p3@Etv1!0.36!1.29!Etv1;;chr15:75578748..75578752,-!p1@Mafa!0.36!1.29!Mafa;;chr13:31717597..31717613,+!p2@Foxf2!0.36!1.29!Foxf2;;chr9:22112085..22112138,-!p1@Zfp810!0.35!25.07!Zfp810;;chr1:193007123..193007139,-!p1@Atf3!0.35!10.60!Atf3;;chr5:104121391..104121450,+!p3@Aff1!0.35!10.08!Aff1;;chrX:45807450..45807478,-!p3@Elf4!0.35!6.20!Elf4;;chr19:5637475..5637486,+!p6@Rela!0.35!4.39!Rela;;chr2:115890953..115890974,-!p6@Meis2!0.35!2.33!Meis2;;chr2:152758938..152758954,-!p2@Foxs1!0.35!2.07!Foxs1;;chr6:52141694..52141715,-!p1@Hoxa4!0.35!1.81!Hoxa4;;chr4:43575485..43575542,+!p1@Creb3!0.34!55.56!Creb3;;chr17:35372700..35372762,-!p1@Nfkbil1!0.34!20.93!Nfkbil1;;chr13:99954640..99954681,+!p1@Zfp366!0.34!6.46!Zfp366;;chr13:31650185..31650201,+!p1@Foxq1!0.34!6.20!Foxq1;;chr2:168781029..168781093,-!p2@LOC100502777,p2@Zfp64!0.34!6.20!Zfp64;;chr12:85534778..85534812,-!p3@C130039O16Rik!0.34!5.17!C130039O16Rik;;chr18:69681483..69681514,+!p11@Tcf4!0.34!2.58!Tcf4;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.34!2.33!Mesp2;;chr5:147760370..147760377,+!p6@Gtf3a!0.34!2.33!Gtf3a;;chr15:85566051..85566080,+!p4@Ppara!0.34!1.55!Ppara;;chr15:37162834..37162849,+!p2@Grhl2!0.34!1.55!Grhl2;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.33!59.18!Zfp706;;chr11:18918917..18918944,-!p1@Meis1!0.33!24.55!Meis1;;chr7:20408047..20408125,-!p1@Bcl3!0.33!21.71!Bcl3;;chr1:135320989..135321043,-!p1@Sox13!0.33!20.93!Sox13;;chr12:36219645..36219730,-!p1@Ahr!0.33!18.61!Ahr;;chr1:172797864..172797873,-!p2@Atf6!0.33!4.65!Atf6;;chr7:97591412..97591431,+!p2@Crebzf!0.33!4.39!Crebzf;;chr4:84320893..84320910,-!p1@Bnc2!0.33!3.62!Bnc2;;chr2:56976543..56976558,-!p2@Nr4a2!0.33!3.62!Nr4a2;;chr2:153067079..153067090,-!p2@Plagl2!0.33!3.36!Plagl2;;chr18:83079981..83080037,+!p6@Zfp516!0.33!2.58!Zfp516;;chr11:85646427..85646451,+!p4@Tbx2!0.33!2.58!Tbx2;;chr12:25336286..25336297,+!p2@Klf11!0.33!2.07!Klf11;;chr2:56976467..56976482,-!p4@Nr4a2!0.33!1.55!Nr4a2;;chr8:74842952..74842970,+!p1@Klf2!0.32!127.92!Klf2;;chr16:55822241..55822258,-!p1@Nfkbiz!0.32!58.40!Nfkbiz;;chr1:92895299..92895373,+!p2@Lrrfip1!0.32!38.76!Lrrfip1;;chr18:80904854..80904919,-!p2@Nfatc1!0.32!22.22!Nfatc1;;chr11:53164378..53164392,+!p2@Aff4!0.32!15.76!Aff4;;chr17:71199121..71199165,-!p2@Tgif1!0.32!12.92!Tgif1;;chr17:28314341..28314394,+!p2@Zfp523!0.32!10.34!Zfp523;;chr14:65977324..65977372,+!p2@Zfp395!0.32!10.08!Zfp395;;chr10:79389784..79389833,+!p1@Arid3a!0.32!9.30!Arid3a;;chr18:74376000..74376061,+!p3@Cxxc1!0.32!6.20!Cxxc1;;chr2:166888058..166888105,-!p2@Znfx1!0.32!5.43!Znfx1;;chr1:186556323..186556370,-!p2@Hlx!0.32!4.39!Hlx;;chr6:90412556..90412581,+!p3@Klf15!0.32!3.36!Klf15;;chr12:113917014..113917034,+!p1@Zbtb42!0.32!2.58!Zbtb42;;chr12:9581243..9581254,+!p4@Osr1!0.32!1.81!Osr1;;chr7:144505957..144505972,-!p2@Ebf3!0.32!1.55!Ebf3;;chr2:168427252..168427273,-!p2@Nfatc2!0.32!1.55!Nfatc2;;chr17:25152634..25152648,-!p8@Cramp1l!0.32!1.55!Cramp1l;;chr11:96147952..96147967,+!p1@Hoxb7!0.32!1.55!Hoxb7;;chr4:102787067..102787080,+!p10@Mier1!0.32!1.55!Mier1;;chr3:29912154..29912168,-!p11@Mecom!0.32!1.29!Mecom;;chr9:96620459..96620478,-!p9@Zbtb38!0.32!1.29!Zbtb38;;chr4:122911086..122911112,+!p1@Heyl!0.31!20.93!Heyl;;chr16:87699237..87699279,+!p1@Bach1!0.31!18.87!Bach1;;chr12:25336211..25336274,+!p1@Klf11!0.31!18.61!Klf11;;chr5:120121020..120121049,+!p1@Tbx3!0.31!10.60!Tbx3;;chr16:87699206..87699229,+!p3@Bach1!0.31!9.30!Bach1;;chr8:87225329..87225396,+!p1@Lyl1!0.31!6.20!Lyl1;;chr7:87171233..87171255,+!p3@Zfp710!0.31!4.39!Zfp710;;chr1:52176406..52176433,+!p2@Stat1!0.31!3.88!Stat1;;chr9:32349240..32349276,-!p2@Fli1!0.31!3.62!Fli1;;chr1:193961837..193961849,-!p3@Rcor3!0.31!2.84!Rcor3;;chr11:102179350..102179375,-!p7@Ubtf!0.31!2.84!Ubtf;;chr1:170361633..170361644,-!p11@Pbx1!0.31!2.33!Pbx1;;chr13:72766250..72766273,+!p1@Irx2!0.31!2.07!Irx2;;chr19:10315252..10315266,-!p2@Gm98!0.31!2.07!Gm98;;chrX:45245621..45245632,-!p3@Smarca1!0.31!1.81!Smarca1;;chr14:67853457..67853482,+!p2@Ebf2!0.31!1.81!Ebf2;;chr16:3744192..3744206,+!p4@Zfp263!0.31!1.55!Zfp263;;chr15:102865131..102865151,+!p2@Hoxc4!0.31!1.29!Hoxc4;;chr11:44431626..44431637,+!p10@Ebf1!0.31!1.29!Ebf1;;chr11:96164821..96164865,+!p1@Hoxb5!0.31!1.03!Hoxb5;;chr10:12844757..12844771,+!p2@Plagl1!0.31!1.03!Plagl1;;chr17:14011485..14011507,+!p2@Mllt4!0.31!1.03!Mllt4;;chr18:69681413..69681424,+!p24@Tcf4!0.31!1.03!Tcf4;;chr6:52133827..52133854,-!p2@Hoxa3!0.31!1.03!Hoxa3;;chr2:105003277..105003280,+!p5@Wt1!0.31!1.03!Wt1;;chr1:138850177..138850182,-!p11@Nr5a2!0.31!1.03!Nr5a2;;chr2:105522662..105522687,+!p2@Pax6!0.31!1.03!Pax6;;chr1:191993385..191993405,-!p3@Prox1!0.31!1.03!Prox1;;chr2:103264245..103264268,+!p2@Elf5!0.31!1.03!Elf5;;chr1:194979383..19497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pg!0.25!40.31!Cebpg;;chr13:21545583..21545630,-!p1@Zfp187!0.25!20.16!Zfp187;;chr2:167363692..167363710,+!p1@Snai1!0.25!19.12!Snai1;;chr6:47827642..47827707,+!p1@Zfp282!0.25!16.54!Zfp282;;chr18:3281034..3281104,-!p1@Crem!0.25!10.85!Crem;;chr8:125897750..125897758,+!p2@Tcf25!0.25!10.08!Tcf25;;chr2:90936901..90936945,+!p1@Sfpi1!0.25!7.75!Sfpi1;;chr11:69579472..69579529,+!p1@Zbtb4!0.25!7.49!Zbtb4;;chr17:34730333..34730362,+!p2@Pbx2!0.25!5.69!Pbx2;;chr1:52176378..52176401,+!p3@Stat1!0.25!4.13!Stat1;;chr1:162836606..162836631,+!p2@Rc3h1!0.25!3.62!Rc3h1;;chr18:7004715..7004731,-!p1@Mkx!0.25!3.10!Mkx;;chr8:87643578..87643593,-!p1@Zfp791!0.25!2.58!Zfp791;;chr13:99954688..99954710,+!p2@Zfp366!0.25!2.33!Zfp366;;chr5:31262699..31262712,-!p2@Preb!0.25!1.81!Preb;;chr13:29045131..29045159,-!p3@Sox4!0.25!1.55!Sox4;;chr6:134780337..134780355,+!p3@Crebl2!0.25!1.29!Crebl2;;chr18:76219161..76219176,+!p4@Zbtb7c!0.25!1.29!Zbtb7c;;chr18:53623836..53623839,+!p1@Prdm6!0.25!1.03!Prdm6;;chr19:5560570..5560582,-!p2@Ovol1!0.25!0.78!Ovol1;;chr18:64499879..64499895,+!p3@Onecut2!0.25!0.78!Onecut2;;chr17:28409136..28409150,+!p3@Ppard!0.25!0.78!Ppard;;chr12:39510042..39510069,+!p8@Etv1!0.25!0.78!Etv1;;chr14:63864337..63864381,-!p6@Gata4!0.25!0.78!Gata4;;chr13:31717614..31717628,+!p3@Foxf2!0.25!0.78!Foxf2;;chr13:44825163..44825176,+!p18@Jarid2!0.25!0.78!Jarid2;;chr11:98826216..98826227,+!p10@Rara!0.25!0.78!Rara;;chr11:60034039..60034050,-!p4@Srebf1!0.25!0.78!Srebf1;;chr10:30375665..30375674,-!p11@Ncoa7!0.25!0.78!Ncoa7;;chr4:13678684..13678704,+!p17@Runx1t1!0.25!0.78!Runx1t1;;chr4:87452236..87452249,-!p9@Mllt3!0.25!0.78!Mllt3;;chr4:13678514..13678539,+!p14@Runx1t1!0.25!0.78!Runx1t1;;chr4:134676555..134676575,+!p2@Runx3!0.25!0.78!Runx3;;chr3:128916838..128916856,+!p4@Pitx2!0.25!0.78!Pitx2;;chr4:6917763..6917782,-!p6@Tox!0.25!0.78!Tox;;chr6:88148324..88148328,+!p3@Gata2!0.25!0.78!Gata2;;chr6:16848443..16848459,-!p3@Tfec!0.25!0.78!Tfec;;chr5:122500227..122500240,-!p6@Cux2!0.25!0.78!Cux2;;chr5:115421126..115421137,-!p4@Hnf1a!0.25!0.78!Hnf1a;;chr5:67490391..67490404,-!p3@Phox2b!0.25!0.78!Phox2b;;chr9:96159210..96159221,+!p10@Tfdp2!0.25!0.78!Tfdp2;;chr9:59797133..59797145,-!p7@Nr2e3!0.25!0.78!Nr2e3;;chr1:169528520..169528542,+!p2@Rxrg!0.25!0.78!Rxrg;;chr1:165244244..165244254,-!p8@Prrx1!0.25!0.78!Prrx1;;chr1:120524563..120524591,+!p2@Tfcp2l1!0.25!0.78!Tfcp2l1;;chr18:70727922..70728052,+!p1@Mbd2!0.24!56.85!Mbd2;;chr5:65194752..65194769,+!p1@Klf3!0.24!51.94!Klf3;;chr5:140267476..140267493,+!p1@Mafk!0.24!8.27!Mafk;;chr2:72818978..72818997,-!p4@Sp3!0.24!6.20!Sp3;;chr2:152223441..152223465,-!p2@Sox12!0.24!5.69!Sox12;;chr12:3806536..3806571,+!p3@Dnmt3a!0.24!4.91!Dnmt3a;;chr1:13362515..13362538,-!p2@Ncoa2!0.24!4.65!Ncoa2;;chr9:96096665..96096699,+!p4@Tfdp2!0.24!4.65!Tfdp2;;chr18:83080305..83080335,+!p2@Zfp516!0.24!4.13!Zfp516;;chr5:107125807..107125835,-!p3@Zfp644!0.24!3.62!Zfp644;;chr12:85657780..85657815,+!p2@Zfp410!0.24!3.36!Zfp410;;chr3:94641455..94641486,+!p4@Pogz!0.24!3.36!Pogz;;chr18:84255649..84255661,-!p4@Tshz1!0.24!3.36!Tshz1;;chr11:44430788..44430804,+!p3@Ebf1!0.24!3.10!Ebf1;;chr10:107769750..107769799,+!p2@Pawr!0.24!2.58!Pawr;;chr6:15135456..15135520,+!p3@Foxp2!0.24!2.58!Foxp2;;chr5:122500142..122500167,-!p2@Cux2!0.24!2.58!Cux2;;chr13:5860872..5860883,+!p3@Klf6!0.24!2.33!Klf6;;chr5:138187583..138187602,+!p6@Tsc22d4!0.24!2.07!Tsc22d4;;chr7:134519511..134519534,-!p2@Zfp747!0.24!2.07!Zfp747;;chr3:54611738..54611749,-!p3@Rfxap!0.24!2.07!Rfxap;;chr11:98821858..98821907,+!p6@Rara!0.24!1.81!Rara;;chr2:120996813..120996829,-!p2@Zscan29!0.24!1.81!Zscan29;;chr1:165243379..165243402,-!p3@Prrx1!0.24!1.55!Prrx1;;chr1:4486481..4486501,-!p2@Sox17!0.24!1.55!Sox17;;chr11:96145450..96145517,+!p2@Hoxb7!0.24!1.55!Hoxb7;;chr12:58646974..58647003,-!p1@Foxa1!0.24!1.29!Foxa1;;chr14:22808697..22808715,-!p4@Zfp503!0.24!1.03!Zfp503;;chr13:37918661..37918673,+!p17@Rreb1!0.24!1.03!Rreb1;;chr13:37918684..37918701,+!p12@Rreb1!0.24!1.03!Rreb1;;chr12:37835203..37835218,+!p3@Meox2!0.24!1.03!Meox2;;chr10:67599450..67599456,-!p8@Arid5b!0.24!1.03!Arid5b;;chr4:154011072..154011095,-!p6@Prdm16!0.24!1.03!Prdm16;;chr4:154010334..154010347,-!p8@Prdm16!0.24!1.03!Prdm16;;chr17:71201096..71201114,-!p6@Tgif1!0.24!1.03!Tgif1;;chr17:48015839..48015915,-!p3@Foxp4!0.24!1.03!Foxp4;;chr5:125538703..125538715,-!p5@Ncor2!0.24!1.03!Ncor2;;chr9:111020574..111020687,+!p1@Lrrfip2!0.23!68.23!Lrrfip2;;chr11:60034052..60034134,-!p2@Srebf1!0.23!35.92!Srebf1;;chr12:3807017..3807063,+!p1@Dnmt3a!0.23!24.81!Dnmt3a;;chr17:34053127..34053141,+!p1@Zbtb22!0.23!16.28!Zbtb22;;chr19:38893646..38893732,-!p1@Noc3l!0.23!16.02!Noc3l;;chr10:80813050..80813114,-!p2@Hmg20b!0.23!16.02!Hmg20b;;chr6:72739185..72739232,-!p1@Tcf7l1!0.23!15.25!Tcf7l1;;chr6:140572167..140572236,+!p2@Aebp2!0.23!14.99!Aebp2;;chr16:95680889..95680991,-!p1@Erg!0.23!11.89!Erg;;chr5:36826883..36826951,-!p1@Tada2b!0.23!10.85!Tada2b;;chr8:81552152..81552208,+!p1@Zfp827!0.23!10.60!Zfp827;;chr11:100800771..100800798,-!p2@Stat3!0.23!9.56!Stat3;;chr14:65977498..65977528,+!p1@Zfp395!0.23!9.56!Zfp395;;chr11:98821749..98821799,+!p2@Rara!0.23!9.04!Rara;;chr5:65194720..65194738,+!p2@Klf3!0.23!7.75!Klf3;;chr10:20032330..20032345,+!p3@Bclaf1!0.23!6.72!Bclaf1;;chr4:82151622..82151643,-!p4@Nfib!0.23!5.69!Nfib;;chr2:83484738..83484749,+!p5@Zc3h15!0.23!5.43!Zc3h15;;chr7:87171047..87171078,+!p1@Zfp710!0.23!4.39!Zfp710;;chr9:96653072..96653154,-!p1@Zbtb38!0.23!3.36!Zbtb38;;chr11:85646263..85646278,+!p2@Tbx2!0.23!3.10!Tbx2;;chr14:56443806..56443848,+!p1@Nfatc4!0.23!2.33!Nfatc4;;chr6:47785785..47785796,+!p4@Zfp398!0.23!1.55!Zfp398;;chr2:151969288..151969294,+!p1@Tcf15!0.23!1.55!Tcf15;;chr3:103772552..103772584,+!p2@Phtf1!0.23!1.55!Phtf1;;chr15:85566014..85566045,+!p3@Ppara!0.23!1.29!Ppara;;chr4:6917793..6917809,-!p5@Tox!0.23!1.03!Tox;;chr14:52936049..52936057,-!p6@Sall2!0.23!1.03!Sall2;;chr7:89137163..89137200,-!p1@Bnc1!0.23!1.03!Bnc1;;chr1:93698095..93698113,+!p3@Twist2!0.23!1.03!Twist2;;chr2:153067233..153067236,-!p4@Plagl2!0.23!1.03!Plagl2;;chr10:128082840..128082872,-!p1@Ikzf4!0.23!1.03!Ikzf4;;chr10:114821382..114821392,-!p8@Thap2!0.23!1.03!Thap2;;chr7:52071956..52071978,-!p1@Atf5!0.22!47.81!Atf5;;chr8:118231723..118231740,-!p1@Maf!0.22!33.08!Maf;;chr1:36364590..36364608,+!p1@Arid5a!0.22!14.47!Arid5a;;chrX:7339938..7339963,+!p1@Tfe3!0.22!6.98!Tfe3;;chr11:50872733..50872809,+!p1@Zfp354a!0.22!6.20!Zfp354a;;chr6:29476690..29476724,+!p1@Irf5!0.22!6.20!Irf5;;chr19:5637501..5637517,+!p4@Rela!0.22!5.43!Rela;;chr1:170362437..170362478,-!p5@Pbx1!0.22!3.88!Pbx1;;chr5:147760339..147760350,+!p3@Gtf3a!0.22!3.62!Gtf3a;;chr4:13670571..13670625,+!p1@Runx1t1!0.22!3.36!Runx1t1;;chr16:3744162..3744180,+!p2@Zfp263!0.22!3.36!Zfp263;;chr12:78063146..78063159,-!p2@Max!0.22!3.10!Max;;chr15:76181718..76181729,+!p3@Maf1!0.22!2.84!Maf1;;chr18:36441119..36441158,+!p2@Pura!0.22!2.84!Pura;;chr2:34227524..34227547,-!p2@Pbx3!0.22!2.07!Pbx3;;chr11:121380594..121380609,-!p2@Zfp750!0.22!1.81!Zfp750;;chr12:100802129..100802145,-!p4@Foxn3!0.22!1.55!Foxn3;;chr10:107769229..107769238,+!p3@Pawr!0.22!1.29!Pawr;;chr13:37917863..37917872,+!p14@Rreb1!0.22!1.29!Rreb1;;chr1:165243653..165243664,-!p4@Prrx1!0.22!1.29!Prrx1;;chr10:127095407..127095440,+!p3@Stat6!0.22!1.03!Stat6;;chr10:44178575..44178590,-!p5@Prdm1!0.22!1.03!Prdm1;;chr3:87946458..87946467,+!p6@Mef2d!0.22!1.03!Mef2d;;chr2:91034924..91034946,-!p2@Nr1h3!0.22!1.03!Nr1h3;;chr15:103085802..103085817,-!p4@Nfe2!0.22!1.03!Nfe2;;chr9:111020795..111020816,+!p3@Lrrfip2!0.22!0.78!Lrrfip2;;chr4:94718879..94718898,-!p1@Jun!0.21!107.25!Jun;;chr16:91044718..91044765,-!p2@Gcfc1!0.21!25.07!Gcfc1;;chr12:4484016..4484074,-!p1@Ncoa1!0.21!23.26!Ncoa1;;chr14:79880971..79880992,+!p2@Elf1!0.21!18.35!Elf1;;chr8:124806017..124806040,+!p2@Zfpm1!0.21!15.51!Zfpm1;;chr11:53164285..53164302,+!p3@Aff4!0.21!11.63!Aff4;;chr16:87699149..87699204,+!p2@Bach1!0.21!11.37!Bach1;;chr7:50835064..50835134,+!p1@Zfp719!0.21!10.85!Zfp719;;chr7:26052688..26052742,+!p1@Cic!0.21!9.56!Cic;;chr18:83084030..83084056,+!p1@Zfp516!0.21!6.72!Zfp516;;chr13:21545538..21545569,-!p2@Zfp187!0.21!5.94!Zfp187;;chr4:149862477..149862553,+!p3@Rere!0.21!4.39!Rere;;chr14:79881330..79881415,+!p3@Elf1!0.21!4.13!Elf1;;chr9:65675474..65675503,-!p3@Zfp609!0.21!3.62!Zfp609;;chr6:72849808..72849837,-!p4@Kcmf1!0.21!3.62!Kcmf1;;chr2:115891454..115891471,-!p3@Meis2!0.21!3.62!Meis2;;chr7:30875418..30875454,-!p2@Zfp566,p2@Zfp82!0.21!3.36!Zfp566;;chr18:74427866..74427881,+!p3@Mbd1!0.21!3.10!Mbd1;;chr2:34227446..34227511,-!p1@Pbx3!0.21!2.58!Pbx3;;chr18:3337465..3337498,-!p6@Crem!0.21!2.07!Crem;;chr9:63869729..63869749,-!p4@Smad6!0.21!2.07!Smad6;;chr10:44178521..44178557,-!p1@Prdm1!0.21!1.81!Prdm1;;chr11:44431710..44431725,+!p7@Ebf1!0.21!1.55!Ebf1;;chr11:62271274..62271337,-!p4@Ncor1!0.21!1.29!Ncor1;;chr10:44178474..44178487,-!p4@Prdm1!0.21!1.29!Prdm1;;chr13:96094769..96094829,+!p4@Zbed3!0.21!1.29!Zbed3;;chr12:37835120..37835133,+!p2@Meox2!0.21!1.29!Meox2;;chr4:63071779..63071791,-!p3@Akna!0.21!1.29!Akna;;chr3:9610233..9610247,-!p4@Zfp704!0.21!1.29!Zfp704;;chr8:108583683..108583693,+!p3@Nfatc3!0.21!1.29!Nfatc3;;chr16:3872255..3872283,-!p4@Zfp597!0.21!1.29!Zfp597;;chr17:21626041..21626052,+!p3@Zfp53!0.21!1.03!Zfp53;;chr15:102865048..102865073,+!p3@Hoxc4!0.21!1.03!Hoxc4;;chr11:96213264..96213282,+!p@chr11:96213264..96213282,+!0.21!1.03!Hoxb2;;chr3:133207369..133207376,-!p3@Tet2!0.21!1.03!Tet2;;chr2:77654650..77654685,-!p3@Zfp385b!0.21!1.03!Zfp385b;;chr14:22806778..22806795,-!p5@Zfp503!0.21!0.78!Zfp503;;chr15:103085690..103085710,-!p3@Nfe2!0.21!0.78!Nfe2;;chr11:106134020..106134128,-!p1@Smarcd2!0.20!27.91!Smarcd2;;chr13:96095213..96095255,+!p1@Zbed3!0.20!20.93!Zbed3;;chr16:4594683..4594735,+!p2@Glis2!0.20!17.57!Glis2;;chr7:28645585..28645659,+!p1@Zfp607!0.20!12.92!Zfp607;;chr15:61816932..61816952,+!p2@Myc!0.20!11.37!Myc;;chr5:145992626..145992652,+!p2@Zfp655!0.20!9.30!Zfp655;;chr6:133985993..133986029,+!p2@Etv6!0.20!8.53!Etv6;;chr17:21587325..21587361,+!p1@Zfp51!0.20!8.01!Zfp51;;chr11:16908650..16908690,-!p1@Plek!0.20!8.01!Plek;;chr2:181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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011266
 |is_obsolete=
+|library_id=CNhs11105
+|library_id_phase_based=2:CNhs11105
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;645
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;645
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N00.CNhs11105.645-26G9.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N00.CNhs11105.645-26G9.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N00.CNhs11105.645-26G9.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N00.CNhs11105.645-26G9.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N00.CNhs11105.645-26G9.mm9.nobarcode.rdna.fa.gz
 |name=pancreas, neonate N00
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11105,LSID733,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.216063736135733,0,0,0,0,0.0998284739419172,0.0113837343005882,0,0,0,0,0.470063043746032,0,0,0,0,0,0,0.168348066923349,0,0,0,0,0,0,1.11879791533098,0,0,0,0,0,0,0.152105196692526,0,0,0,0.308289701630342,0.000421220014282894,0.00578356238348841,0.0112138377965918,0,0.313883005155764,0.038421063619991,0,0,0,0,0,0,0,0,0,0,0.180944521652268,0.0998284739419172,-0.0660055475634404,0,0,0,0,0,0,0,0,0.0998284739419172,0.0128741576503619,-0.0523078343548203,-0.00236095570904399,0.15019865885926,0.133502272729725,0,0.0998284739419172,0.0294546367092989,0,0.0998284739419172,0,0.00127563911135004,-0.00880031923027921,0.114613108275988,0.170436459266453,0,0,0,0,0.0499142369709586,0,0.112046466519195,0.339947676700453,-0.0546967143520847,0,0,0,0,0
@@ Line 62: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 82: / Line 97: @@
 |top_motifs=RXRA_VDR{dimer}:2.41913150479;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.82168872909;SNAI1..3:1.42236246253;XCPE1{core}:1.36317203094;ZNF148:1.33602455282;FOXM1:1.31995781642;HNF4A_NR2F1,2:1.30168753976;ATF6:1.28429070273;FOXA2:1.27996333043;HNF1A:1.27550929041;NR1H4:1.21244550299;EN1,2:1.17948474373;GCM1,2:1.14988334413;AR:1.1073236479;SP1:1.08448038573;MYBL2:1.04219610705;FOX{D1,D2}:1.0253826098;TOPORS:0.99172790215;ESR1:0.950026474253;TLX1..3_NFIC{dimer}:0.93947212684;TFAP4:0.932614404265;MYOD1:0.929199024283;ZEB1:0.926724153959;ZNF238:0.923922644755;TAL1_TCF{3,4,12}:0.897752525338;NFIX:0.896490430285;PDX1:0.845405072729;GATA6:0.824371088462;STAT1,3:0.765020750885;CDX1,2,4:0.728182772469;TBP:0.713473560975;RBPJ:0.684814088125;STAT2,4,6:0.670321478615;IRF1,2:0.668985821556;HIF1A:0.66854354141;MAZ:0.634832556363;ZNF423:0.625265356144;ESRRA:0.617147085704;PAX1,9:0.562228309707;GZF1:0.542107891871;ALX4:0.529966188187;TFAP2B:0.498761847768;LMO2:0.492211450632;TEAD1:0.488154812916;PAX6:0.470394397774;CEBPA,B_DDIT3:0.438092448995;ADNP_IRX_SIX_ZHX:0.42491547056;DMAP1_NCOR{1,2}_SMARC:0.40669256824;DBP:0.405009916677;ZIC1..3:0.402028940102;FOX{I1,J2}:0.366704729165;TLX2:0.364024132844;HIC1:0.349006935993;TFCP2:0.345542082847;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.341025205428;MTE{core}:0.333784111703;IKZF1:0.328058726021;HES1:0.29644214172;FOXP1:0.281222193753;bHLH_family:0.27336782513;MTF1:0.271853507265;GTF2I:0.264517290376;ETS1,2:0.258879243291;MAFB:0.2464262334;EBF1:0.228129624596;SRF:0.213868238285;GTF2A1,2:0.190744460154;T:0.190698808748;MED-1{core}:0.187864541009;BPTF:0.159698068531;GLI1..3:0.151723390386;TP53:0.140761894138;FOS_FOS{B,L1}_JUN{B,D}:0.136064059857;TBX4,5:0.126373938017;PBX1:0.126337854418;HMGA1,2:0.119976312845;ELF1,2,4:0.114585125191;LEF1_TCF7_TCF7L1,2:0.110015288768;STAT5{A,B}:0.105897979116;HMX1:0.101656613913;NKX2-2,8:0.0960727853327;CREB1:0.0893398939416;FOXN1:0.0885480518457;FOSL2:0.0860173738481;ONECUT1,2:0.0681426277393;ATF2:0.0493330736634;CUX2:0.0471365267271;FOX{F1,F2,J1}:0.0465254330802;BACH2:0.0409227063883;SPZ1:0.0340762521397;SOX5:0.0165772209144;FOXO1,3,4:0.013456675705;MYFfamily:0.00878705706058;EGR1..3:0.0056319562867;ARID5B:0.00494221899764;PATZ1:-0.0448569880591;IKZF2:-0.0588688931963;TFAP2{A,C}:-0.0694868161791;NR5A1,2:-0.0711743273575;GFI1B:-0.0755398756921;ZBTB6:-0.0843462399071;SPI1:-0.10643331467;EP300:-0.125031205649;RREB1:-0.126291450125;TGIF1:-0.134781308626;HBP1_HMGB_SSRP1_UBTF:-0.136922923378;NR6A1:-0.140268979362;IRF7:-0.145717491558;NFKB1_REL_RELA:-0.14624925612;HLF:-0.150385479784;NANOG{mouse}:-0.158798832286;FOXL1:-0.159132550247;SMAD1..7,9:-0.159478229463;CDC5L:-0.163711245567;EVI1:-0.164405678554;NR3C1:-0.18130673197;PRDM1:-0.189367485199;FOXD3:-0.192782827507;ELK1,4_GABP{A,B1}:-0.196705235229;NANOG:-0.201607310427;POU6F1:-0.210061866958;NKX3-2:-0.214450818989;REST:-0.215188009426;GATA4:-0.226676539599;NHLH1,2:-0.232432867957;PAX5:-0.248713668625;ZFP161:-0.249800188142;JUN:-0.253974051053;RXR{A,B,G}:-0.255198665513;SPIB:-0.257326686229;SOX2:-0.271307858864;NFY{A,B,C}:-0.288527518697;BREu{core}:-0.289143141061;SOX17:-0.292369192999;NFIL3:-0.29281782692;PAX8:-0.302317748298;RFX1:-0.338789491738;ATF5_CREB3:-0.341227799565;ATF4:-0.352991704842;NKX2-1,4:-0.358561793854;GFI1:-0.362387278623;E2F1..5:-0.362795885397;NFE2L2:-0.362935912108;VSX1,2:-0.386248293088;HAND1,2:-0.392767478694;PRRX1,2:-0.404879280211;AHR_ARNT_ARNT2:-0.438197162144;ZNF143:-0.439832438682;YY1:-0.473029910135;HOXA9_MEIS1:-0.495829614105;MEF2{A,B,C,D}:-0.504046126574;NRF1:-0.5136686692;RUNX1..3:-0.516096235229;NFE2:-0.524107936862;SREBF1,2:-0.533036523961;NKX2-3_NKX2-5:-0.533609292558;NFATC1..3:-0.533668672845;SOX{8,9,10}:-0.561624264247;POU2F1..3:-0.57969421161;PAX2:-0.588856481769;HSF1,2:-0.60276802182;PITX1..3:-0.603563081777;LHX3,4:-0.610356615293;TFDP1:-0.615131444195;MYB:-0.619176075648;MZF1:-0.643012434806;TEF:-0.719303058859;RFX2..5_RFXANK_RFXAP:-0.743705478326;PAX4:-0.771366804261;ZNF384:-0.786554500126;HOX{A5,B5}:-0.794253224503;ZBTB16:-0.813867302059;NKX3-1:-0.865759135135;PPARG:-0.878210941606;AIRE:-0.897304118545;RORA:-0.977589204935;CRX:-0.987957171627;POU3F1..4:-0.989141653307;KLF4:-0.992826222636;POU5F1:-0.995680003875;HOX{A4,D4}:-1.01676792516;UFEwm:-1.02796314839;OCT4_SOX2{dimer}:-1.06964613784;NKX6-1,2:-1.15035353401;ALX1:-1.17687639001;POU1F1:-1.26555632329;FOXQ1:-1.5732442087;NFE2L1:-1.79184805412;FOXP3:-1.8423474942
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:645-26G9;search_select_hide=table117:645-26G9
 }}

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FF:645-26G9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:19, 4 June 2020

CNhs11105

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0