FF:1558-45G3: Difference between revisions

Latest revision as of 19:08, 4 June 2020

Name:	pancreas, embryo E17
Species:	Mouse (Mus musculus)
Library ID:	CNhs10599
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	pancreas
dev stage	17 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004945

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10599		CAGE		DRX009058		DRR009932

Accession ID Mm9

Library id		BAM		CTSS
CNhs10599		DRZ001357		DRZ002740

Accession ID Mm10

Library id		BAM		CTSS
CNhs10599		DRZ012707		DRZ014090

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10599

0	0
1	0
10	0
100	0
1000	0
1001	-0.0623
1002	0.00941
1003	-0.0516
1004	0
1005	0
1006	-0.143
1007	-0.101
1008	0
1009	-0.0424
101	-0.0455
1010	0.527
1011	-0.0616
1012	0
1013	0.595
1014	0.19
1015	-0.00264
1016	-0.0672
1017	0
1018	0.0904
1019	0
102	0
1020	0
1021	0
1022	0.27
1023	0
1024	0.062
1025	0.214
1026	0
1027	0
1028	0
1029	-0.148
103	0.123
1030	0
1031	0.311
1032	0.0518
1033	0.0943
1034	0.357
1035	0
1036	0.0187
1037	0
1038	-0.0845
1039	0.0918
104	0
1040	0.0478
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10599

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.151
MA0003.1	MA0003.1	0.198
MA0004.1	MA0004.1	0.126
MA0006.1	MA0006.1	0.268
MA0007.1	MA0007.1	0.22
MA0009.1	MA0009.1	0.967
MA0014.1	MA0014.1	0.892
MA0017.1	MA0017.1	0.769
MA0018.2	MA0018.2	0.0126
MA0019.1	MA0019.1	0.616
MA0024.1	MA0024.1	0.583
MA0025.1	MA0025.1	0.982
MA0027.1	MA0027.1	0.514
MA0028.1	MA0028.1	0.674
MA0029.1	MA0029.1	0.391
MA0030.1	MA0030.1	0.533
MA0031.1	MA0031.1	0.67
MA0035.2	MA0035.2	3.80273e-4
MA0038.1	MA0038.1	0.731
MA0039.2	MA0039.2	0.0136
MA0040.1	MA0040.1	0.99
MA0041.1	MA0041.1	0.164
MA0042.1	MA0042.1	0.432
MA0043.1	MA0043.1	0.416
MA0046.1	MA0046.1	1.66643e-31
MA0047.2	MA0047.2	8.16045e-5
MA0048.1	MA0048.1	0.426
MA0050.1	MA0050.1	2.63761e-4
MA0051.1	MA0051.1	3.59467e-4
MA0052.1	MA0052.1	0.488
MA0055.1	MA0055.1	0.998
MA0057.1	MA0057.1	0.541
MA0058.1	MA0058.1	0.165
MA0059.1	MA0059.1	0.0234
MA0060.1	MA0060.1	0.00106
MA0061.1	MA0061.1	0.372
MA0062.2	MA0062.2	0.378
MA0065.2	MA0065.2	0.0159
MA0066.1	MA0066.1	0.411
MA0067.1	MA0067.1	0.0263
MA0068.1	MA0068.1	0.378
MA0069.1	MA0069.1	0.177
MA0070.1	MA0070.1	0.155
MA0071.1	MA0071.1	0.96
MA0072.1	MA0072.1	0.906
MA0073.1	MA0073.1	0.772
MA0074.1	MA0074.1	0.0462
MA0076.1	MA0076.1	0.54
MA0077.1	MA0077.1	0.133
MA0078.1	MA0078.1	0.247
MA0079.2	MA0079.2	0.196
MA0080.2	MA0080.2	0.325
MA0081.1	MA0081.1	0.209
MA0083.1	MA0083.1	0.653
MA0084.1	MA0084.1	0.624
MA0087.1	MA0087.1	0.407
MA0088.1	MA0088.1	0.138
MA0090.1	MA0090.1	0.132
MA0091.1	MA0091.1	1.74144e-6
MA0092.1	MA0092.1	0.379
MA0093.1	MA0093.1	0.118
MA0099.2	MA0099.2	0.818
MA0100.1	MA0100.1	0.00787
MA0101.1	MA0101.1	0.675
MA0102.2	MA0102.2	0.0817
MA0103.1	MA0103.1	7.02301e-6
MA0104.2	MA0104.2	0.19
MA0105.1	MA0105.1	0.238
MA0106.1	MA0106.1	0.731
MA0107.1	MA0107.1	0.894
MA0108.2	MA0108.2	6.22838e-4
MA0111.1	MA0111.1	0.647
MA0112.2	MA0112.2	0.0266
MA0113.1	MA0113.1	0.419
MA0114.1	MA0114.1	0.462
MA0115.1	MA0115.1	0.983
MA0116.1	MA0116.1	0.2
MA0117.1	MA0117.1	0.875
MA0119.1	MA0119.1	0.0686
MA0122.1	MA0122.1	0.921
MA0124.1	MA0124.1	0.523
MA0125.1	MA0125.1	0.265
MA0131.1	MA0131.1	0.645
MA0135.1	MA0135.1	0.0137
MA0136.1	MA0136.1	0.118
MA0137.2	MA0137.2	0.139
MA0138.2	MA0138.2	0.819
MA0139.1	MA0139.1	0.125
MA0140.1	MA0140.1	0.00298
MA0141.1	MA0141.1	0.0482
MA0142.1	MA0142.1	0.355
MA0143.1	MA0143.1	0.612
MA0144.1	MA0144.1	0.0527
MA0145.1	MA0145.1	0.0148
MA0146.1	MA0146.1	0.122
MA0147.1	MA0147.1	0.0472
MA0148.1	MA0148.1	2.89131e-4
MA0149.1	MA0149.1	0.424
MA0150.1	MA0150.1	0.511
MA0152.1	MA0152.1	0.403
MA0153.1	MA0153.1	3.03906e-13
MA0154.1	MA0154.1	0.0203
MA0155.1	MA0155.1	0.0653
MA0156.1	MA0156.1	0.476
MA0157.1	MA0157.1	0.669
MA0159.1	MA0159.1	0.239
MA0160.1	MA0160.1	0.0806
MA0162.1	MA0162.1	0.287
MA0163.1	MA0163.1	0.0542
MA0164.1	MA0164.1	0.0369
MA0258.1	MA0258.1	0.0644
MA0259.1	MA0259.1	0.422

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10599

Novel motif	Logo	P-value
1	1	0.554
10	10	0.669
100	100	0.952
101	101	0.969
102	102	0.239
103	103	0.995
104	104	0.699
105	105	0.803
106	106	0.167
107	107	0.944
108	108	0.461
109	109	8.62507e-4
11	11	0.181
110	110	0.344
111	111	0.503
112	112	0.306
113	113	0.357
114	114	0.849
115	115	0.777
116	116	0.0166
117	117	0.575
118	118	0.418
119	119	0.42
12	12	0.529
120	120	0.978
121	121	0.987
122	122	0.285
123	123	0.381
124	124	0.184
125	125	0.17
126	126	0.0167
127	127	0.402
128	128	0.396
129	129	0.642
13	13	0.018
130	130	0.975
131	131	0.262
132	132	0.266
133	133	0.868
134	134	0.106
135	135	0.61
136	136	0.0546
137	137	0.343
138	138	0.0595
139	139	0.835
14	14	0.8
140	140	0.904
141	141	0.412
142	142	0.0875
143	143	0.716
144	144	0.303
145	145	0.291
146	146	0.0505
147	147	0.0148
148	148	0.412
149	149	0.0775
15	15	0.259
150	150	0.506
151	151	0.992
152	152	0.0279
153	153	0.531
154	154	0.158
155	155	0.973
156	156	0.0162
157	157	0.839
158	158	0.891
159	159	0.58
160	160	0.191
161	161	0.151
162	162	0.965
163	163	0.933
164	164	0.974
165	165	0.895
166	166	0.158
167	167	0.0667
168	168	0.113
169	169	0.102
17	17	0.331
18	18	0.706
19	19	0.054
2	2	0.136
20	20	0.612
21	21	0.691
22	22	0.171
23	23	0.388
24	24	0.0105
25	25	0.965
26	26	0.00909
27	27	0.374
28	28	0.413
29	29	0.54
3	3	0.714
30	30	0.119
31	31	0.439
32	32	0.221
33	33	0.598
34	34	0.346
35	35	0.511
36	36	0.158
37	37	0.13
38	38	0.53
39	39	0.146
4	4	0.0822
40	40	0.0199
41	41	0.793
42	42	0.303
43	43	0.789
44	44	0.0988
45	45	0.33
46	46	0.369
47	47	0.37
48	48	0.406
49	49	0.836
5	5	0.517
50	50	0.109
51	51	0.844
52	52	0.325
53	53	0.309
54	54	0.967
55	55	0.684
56	56	0.17
57	57	0.176
58	58	0.425
59	59	0.00489
6	6	0.441
60	60	0.18
61	61	0.464
62	62	0.558
63	63	0.0721
64	64	0.39
65	65	0.0785
66	66	0.0613
67	67	0.66
68	68	0.165
69	69	0.978
7	7	0.161
70	70	0.76
71	71	0.0512
72	72	0.409
73	73	0.0391
74	74	0.447
75	75	0.417
76	76	0.254
77	77	0.015
78	78	0.333
79	79	0.14
8	8	0.319
80	80	0.504
81	81	0.741
82	82	0.468
83	83	0.75
84	84	0.573
85	85	0.333
86	86	0.549
87	87	0.00812
88	88	0.272
89	89	0.165
9	9	0.638
90	90	0.21
91	91	0.883
92	92	0.616
93	93	0.746
94	94	0.012
95	95	0.0398
96	96	0.545
97	97	0.0368
98	98	0.5
99	99	0.104

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10599

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011258 mouse pancreas- embryo E17 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011258 (mouse pancreas- embryo E17 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004945
+|accession_numbers=CAGE;DRX009058;DRR009932;DRZ001357;DRZ002740;DRZ012707;DRZ014090
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!2.87!733.23!Rbpjl;;chr2:19367259..19367278,+!p1@Ptf1a!2.57!370.31!Ptf1a;;chr5:144951153..144951203,+!p1@Bhlha15!2.43!383.89!Bhlha15;;chr10:61595830..61595846,+!p1@Neurog3!2.04!108.67!Neurog3;;chr7:19608891..19608895,-!p1@Foxa3!1.72!65.56!Foxa3;;chr9:74709695..74709722,+!p1@Onecut1!1.69!47.54!Onecut1;;chr17:27865882..27865901,-!p1@Spdef!1.62!41.05!Spdef;;chr2:147871627..147871641,-!p1@Foxa2!1.51!31.60!Foxa2;;chr2:163332558..163332596,+!p2@Hnf4a!1.48!29.23!Hnf4a;;chr8:59799772..59799789,+!p1@Hand2!1.47!80.62!Hand2;;chr2:79296783..79296801,-!p1@Neurod1!1.34!20.97!Neurod1;;chr7:17647736..17647772,-!p1@Hif3a!1.33!71.46!Hif3a;;chr14:63864056..63864102,-!p1@Gata4!1.31!33.07!Gata4;;chr1:138857076..138857105,-!p1@Nr5a2!1.31!19.19!Nr5a2;;chr4:133109285..133109308,+!p1@Nr0b2!1.29!18.60!Nr0b2;;chr5:148081686..148081715,+!p1@Pdx1!1.20!14.77!Pdx1;;chr11:83664365..83664383,+!p1@Hnf1b!1.13!12.40!Hnf1b;;chr5:125538737..125538781,-!p2@Ncor2!1.11!43.11!Ncor2;;chr9:96620459..96620478,-!p9@Zbtb38!1.08!12.11!Zbtb38;;chr3:30039329..30039355,-!p5@Mecom!1.08!10.93!Mecom;;chr11:98605517..98605539,+!p5@Thra!1.06!15.36!Thra;;chr5:148081722..148081744,+!p2@Pdx1!1.05!10.34!Pdx1;;chrX:45245679..45245702,-!p1@Smarca1!1.04!45.18!Smarca1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.03!9.74!Nkx2-3;;chr2:146047829..146047847,+!p1@Insm1!1.02!17.42!Insm1;;chr5:148081667..148081678,+!p3@Pdx1!1.01!9.15!Pdx1;;chr14:63890519..63890539,-!p3@Gata4!1.01!9.15!Gata4;;chr7:52472041..52472065,+!p2@Tead2!1.00!10.63!Tead2;;chr5:135582751..135582788,+!p1@Mlxipl!0.99!35.73!Mlxipl;;chr10:22539932..22539956,-!p1@Tcf21!0.98!23.33!Tcf21;;chr1:138857048..138857071,-!p2@Nr5a2!0.98!8.56!Nr5a2;;chr5:102094214..102094230,-!p1@Nkx6-1!0.97!8.27!Nkx6-1;;chr19:10315179..10315241,-!p1@Gm98!0.96!87.11!Gm98;;chr7:6649134..6649167,-!p1@Zim1!0.95!44.59!Zim1;;chr10:12810631..12810649,+!p1@Plagl1!0.94!207.89!Plagl1;;chr2:103264213..103264233,+!p1@Elf5!0.94!7.68!Elf5;;chr1:138857112..138857130,-!p7@Nr5a2!0.94!7.68!Nr5a2;;chr2:103143336..103143367,-!p1@Ehf!0.92!12.11!Ehf;;chr14:63890660..63890687,-!p7@Gata4!0.92!7.38!Gata4;;chr19:5560600..5560617,-!p1@Ovol1!0.91!8.86!Ovol1;;chr1:138846009..138846038,-!p3@Nr5a2!0.90!7.97!Nr5a2;;chr2:147012125..147012149,-!p1@Nkx2-2!0.89!6.79!Nkx2-2;;chr1:137155026..137155042,-!p1@Elf3!0.87!39.28!Elf3;;chr2:105509045..105509071,+!p1@Pax6!0.87!6.50!Pax6;;chr7:52471143..52471186,+!p1@Tead2!0.86!70.87!Tead2;;chr14:63890545..63890560,-!p5@Gata4!0.86!6.20!Gata4;;chr13:117099847..117099907,-!p1@Isl1!0.85!11.52!Isl1;;chr4:135129538..135129558,-!p1@Grhl3!0.84!9.15!Grhl3;;chr12:9581262..9581282,+!p1@Osr1!0.80!69.69!Osr1;;chr3:90046995..90047031,-!p2@Creb3l4!0.80!6.79!Creb3l4;;chr2:147019977..147019985,-!p2@Nkx2-2!0.80!5.32!Nkx2-2;;chr14:63890491..63890516,-!p2@Gata4!0.80!5.32!Gata4;;chrX:108009761..108009788,+!p1@Pou3f4!0.80!5.32!Pou3f4;;chr1:138846079..138846103,-!p6@Nr5a2!0.78!5.02!Nr5a2;;chr5:115420882..115420896,-!p3@Hnf1a!0.76!4.72!Hnf1a;;chr14:63890459..63890484,-!p4@Gata4!0.76!4.72!Gata4;;chr15:75578748..75578752,-!p1@Mafa!0.76!4.72!Mafa;;chr15:35225845..35225867,+!p1@Osr2!0.75!12.40!Osr2;;chrX:90531838..90531861,+!p1@Arx!0.73!5.61!Arx;;chr19:45225149..45225186,+!p1@Tlx1!0.73!4.43!Tlx1;;chr14:63890691..63890718,-!p8@Gata4!0.73!4.43!Gata4;;chr9:74714303..74714318,+!p2@Onecut1!0.73!4.43!Onecut1;;chr6:90412582..90412601,+!p1@Klf15!0.72!22.44!Klf15;;chr6:52114821..52114828,-!p1@Hoxa2!0.72!6.79!Hoxa2;;chr6:52154414..52154462,-!p1@Hoxa5!0.71!5.91!Hoxa5;;chr10:88969376..88969395,-!p1@Nr1h4!0.71!4.13!Nr1h4;;chr2:147012101..147012118,-!p3@Nkx2-2!0.71!4.13!Nkx2-2;;chr19:37509324..37509337,+!p1@Hhex!0.70!32.19!Hhex;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.70!6.50!Mesp2;;chr11:5420954..5420969,+!p2@Xbp1!0.69!55.22!Xbp1;;chr18:11052642..11052659,+!p1@Gata6!0.69!22.44!Gata6;;chr1:138846047..138846074,-!p5@Nr5a2!0.68!4.13!Nr5a2;;chr9:74709682..74709691,+!p3@Onecut1!0.68!3.84!Onecut1;;chr4:154010409..154010466,-!p2@Prdm16!0.67!9.45!Prdm16;;chr11:121380640..121380655,-!p1@Zfp750!0.67!6.50!Zfp750;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.66!40.46!Zfp706;;chr18:11052456..11052477,+!p3@Gata6!0.66!12.40!Gata6;;chr8:87425854..87425891,+!p1@Klf1!0.66!3.54!Klf1;;chr2:103143315..103143328,-!p2@Ehf!0.66!3.54!Ehf;;chr6:30908793..30908815,-!p1@Klf14!0.66!3.54!Klf14;;chr13:48758276..48758291,+!p1@Barx1!0.66!3.54!Barx1;;chr5:102094266..102094273,-!p3@Nkx6-1!0.66!3.54!Nkx6-1;;chr2:115888250..115888298,-!p10@Meis2!0.65!4.43!Meis2;;chr11:112643496..112643562,+!p1@Sox9!0.64!148.83!Sox9;;chr18:80904854..80904919,-!p2@Nfatc1!0.64!47.54!Nfatc1;;chr18:11052606..11052633,+!p4@Gata6!0.64!9.45!Gata6;;chr11:98826178..98826197,+!p7@Rara!0.63!3.25!Rara;;chr2:147871948..147871977,-!p3@Foxa2!0.63!3.25!Foxa2;;chr2:147872074..147872079,-!p4@Foxa2!0.63!3.25!Foxa2;;chr2:147872790..147872821,-!p2@Foxa2!0.63!3.25!Foxa2;;chr13:48758358..48758415,+!p2@Barx1!0.63!3.25!Barx1;;chr2:168415815..168415872,-!p1@Nfatc2!0.62!20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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011258
 |is_obsolete=
+|library_id=CNhs10599
+|library_id_phase_based=2:CNhs10599
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1558
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1558
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E17.CNhs10599.1558-45G3.mm9.nobarcode.rdna.fa.gz
 |name=pancreas, embryo E17
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10599,LSID654,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.246311075995982,0,0,0,0,0,-0.441621670198561,0,0,0,0,0.309500751655637,0,0,0,0,0,0,0.00966866089026247,0,0,0,0,0,0,0.486729812178725,0,0,0,0,0,0,-0.282902824108042,0,0,0,0,0,-0.209322725495826,0,-0.105729744005321,0.244863580747083,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.029333700415578,0,-0.0299155595643682,0,0,-0.00169058422863344,-0.159398064554041,-0.035130689123397,-0.158091042771083,-0.0313476967041085,0,-0.0780086007519514,-0.0179958865105151,0.0688151653669086,0,0,-0.0593467371293889,-0.0961223904473507,0.204488325066418,-0.0788315948399074,0,0,0,0,0,0,0.0740839992844813,0.314360665554823,0.0964654920763782,0,0,0,0,0
@@ Line 83: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1558-45G3;search_select_hide=table117:1558-45G3
 }}

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FF:1558-45G3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:08, 4 June 2020

CNhs10599

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0