FF:1351-25D3: Difference between revisions

Latest revision as of 19:01, 4 June 2020

Name:	heart, neonate N25
Species:	Mouse (Mus musculus)
Library ID:	CNhs11196
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	heart
dev stage	25 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005134

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11196		CAGE		DRX008984		DRR009858

Accession ID Mm9

Library id		BAM		CTSS
CNhs11196		DRZ001283		DRZ002666

Accession ID Mm10

Library id		BAM		CTSS
CNhs11196		DRZ012633		DRZ014016

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11196

0	0
1	0
10	0.854
100	0
1000	0.812
1001	0.701
1002	0.0754
1003	0.18
1004	0
1005	0
1006	0.575
1007	-0.151
1008	0
1009	0.25
101	-0.0446
1010	0
1011	0
1012	0.0862
1013	-0.0775
1014	-0.00116
1015	-0.256
1016	0.0121
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.717
1023	0
1024	0.458
1025	0
1026	0.0862
1027	0.0252
1028	0
1029	0.0978
103	0.0637
1030	0
1031	-0.0306
1032	0.132
1033	0
1034	0
1035	0.404
1036	-0.307
1037	0
1038	0.0914
1039	0.641
104	0
1040	0.219
1041	0.322

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11196

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.731
MA0003.1	MA0003.1	0.277
MA0004.1	MA0004.1	0.0746
MA0006.1	MA0006.1	0.205
MA0007.1	MA0007.1	0.985
MA0009.1	MA0009.1	0.862
MA0014.1	MA0014.1	0.634
MA0017.1	MA0017.1	0.68
MA0018.2	MA0018.2	0.0981
MA0019.1	MA0019.1	0.167
MA0024.1	MA0024.1	4.37417e-4
MA0025.1	MA0025.1	0.486
MA0027.1	MA0027.1	0.398
MA0028.1	MA0028.1	0.0257
MA0029.1	MA0029.1	0.802
MA0030.1	MA0030.1	0.162
MA0031.1	MA0031.1	0.457
MA0035.2	MA0035.2	3.31506e-5
MA0038.1	MA0038.1	0.613
MA0039.2	MA0039.2	0.676
MA0040.1	MA0040.1	0.254
MA0041.1	MA0041.1	0.387
MA0042.1	MA0042.1	0.435
MA0043.1	MA0043.1	0.133
MA0046.1	MA0046.1	1.50793e-15
MA0047.2	MA0047.2	0.68
MA0048.1	MA0048.1	0.722
MA0050.1	MA0050.1	0.0355
MA0051.1	MA0051.1	0.0257
MA0052.1	MA0052.1	1.50826e-51
MA0055.1	MA0055.1	0.464
MA0057.1	MA0057.1	0.591
MA0058.1	MA0058.1	0.0445
MA0059.1	MA0059.1	0.159
MA0060.1	MA0060.1	2.58092e-11
MA0061.1	MA0061.1	0.517
MA0062.2	MA0062.2	4.46631e-5
MA0065.2	MA0065.2	0.00727
MA0066.1	MA0066.1	0.834
MA0067.1	MA0067.1	0.403
MA0068.1	MA0068.1	0.855
MA0069.1	MA0069.1	0.184
MA0070.1	MA0070.1	0.943
MA0071.1	MA0071.1	0.00983
MA0072.1	MA0072.1	0.657
MA0073.1	MA0073.1	0.859
MA0074.1	MA0074.1	0.201
MA0076.1	MA0076.1	0.00193
MA0077.1	MA0077.1	0.835
MA0078.1	MA0078.1	0.701
MA0079.2	MA0079.2	0.77
MA0080.2	MA0080.2	0.237
MA0081.1	MA0081.1	0.848
MA0083.1	MA0083.1	7.71115e-11
MA0084.1	MA0084.1	0.5
MA0087.1	MA0087.1	0.529
MA0088.1	MA0088.1	0.707
MA0090.1	MA0090.1	1.45143e-4
MA0091.1	MA0091.1	0.492
MA0092.1	MA0092.1	0.412
MA0093.1	MA0093.1	0.058
MA0099.2	MA0099.2	0.333
MA0100.1	MA0100.1	0.0182
MA0101.1	MA0101.1	0.938
MA0102.2	MA0102.2	0.225
MA0103.1	MA0103.1	0.00541
MA0104.2	MA0104.2	0.0534
MA0105.1	MA0105.1	0.376
MA0106.1	MA0106.1	0.351
MA0107.1	MA0107.1	0.576
MA0108.2	MA0108.2	0.377
MA0111.1	MA0111.1	0.783
MA0112.2	MA0112.2	1.44568e-6
MA0113.1	MA0113.1	0.334
MA0114.1	MA0114.1	0.934
MA0115.1	MA0115.1	0.185
MA0116.1	MA0116.1	0.755
MA0117.1	MA0117.1	0.547
MA0119.1	MA0119.1	0.124
MA0122.1	MA0122.1	0.0331
MA0124.1	MA0124.1	0.759
MA0125.1	MA0125.1	0.247
MA0131.1	MA0131.1	0.167
MA0135.1	MA0135.1	0.141
MA0136.1	MA0136.1	0.00454
MA0137.2	MA0137.2	0.265
MA0138.2	MA0138.2	0.00631
MA0139.1	MA0139.1	0.688
MA0140.1	MA0140.1	0.00186
MA0141.1	MA0141.1	3.73787e-9
MA0142.1	MA0142.1	0.363
MA0143.1	MA0143.1	0.172
MA0144.1	MA0144.1	0.508
MA0145.1	MA0145.1	0.0498
MA0146.1	MA0146.1	0.0631
MA0147.1	MA0147.1	0.115
MA0148.1	MA0148.1	0.761
MA0149.1	MA0149.1	0.863
MA0150.1	MA0150.1	0.0537
MA0152.1	MA0152.1	0.215
MA0153.1	MA0153.1	5.20794e-10
MA0154.1	MA0154.1	0.0134
MA0155.1	MA0155.1	0.283
MA0156.1	MA0156.1	0.0429
MA0157.1	MA0157.1	0.89
MA0159.1	MA0159.1	9.35272e-6
MA0160.1	MA0160.1	1.86427e-5
MA0162.1	MA0162.1	0.0834
MA0163.1	MA0163.1	0.11
MA0164.1	MA0164.1	0.298
MA0258.1	MA0258.1	0.00165
MA0259.1	MA0259.1	0.205

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11196

Novel motif	Logo	P-value
1	1	0.0775
10	10	0.583
100	100	0.675
101	101	0.714
102	102	0.772
103	103	0.374
104	104	0.65
105	105	0.101
106	106	0.193
107	107	0.153
108	108	0.673
109	109	0.154
11	11	0.278
110	110	0.154
111	111	0.0173
112	112	0.597
113	113	0.666
114	114	0.0793
115	115	0.55
116	116	0.967
117	117	0.785
118	118	0.784
119	119	0.08
12	12	0.918
120	120	0.205
121	121	0.164
122	122	0.654
123	123	0.517
124	124	0.689
125	125	0.697
126	126	0.635
127	127	0.469
128	128	0.444
129	129	0.0495
13	13	0.00142
130	130	0.791
131	131	0.868
132	132	0.767
133	133	0.575
134	134	0.609
135	135	0.812
136	136	0.48
137	137	0.551
138	138	0.115
139	139	0.078
14	14	0.149
140	140	0.311
141	141	0.439
142	142	0.917
143	143	0.461
144	144	0.453
145	145	0.409
146	146	0.631
147	147	0.501
148	148	0.345
149	149	0.00312
15	15	0.251
150	150	0.412
151	151	0.149
152	152	0.0717
153	153	0.462
154	154	0.949
155	155	0.0551
156	156	0.178
157	157	0.874
158	158	0.0941
159	159	0.0364
160	160	0.248
161	161	0.942
162	162	0.538
163	163	0.274
164	164	0.382
165	165	3.4078e-4
166	166	0.214
167	167	0.905
168	168	0.0798
169	169	7.75013e-5
17	17	0.11
18	18	0.376
19	19	0.0348
2	2	0.592
20	20	0.746
21	21	0.326
22	22	0.028
23	23	0.323
24	24	0.833
25	25	0.721
26	26	0.0912
27	27	0.903
28	28	0.813
29	29	0.896
3	3	0.259
30	30	0.57
31	31	0.394
32	32	0.926
33	33	0.73
34	34	0.2
35	35	0.965
36	36	0.66
37	37	0.0145
38	38	0.623
39	39	0.623
4	4	0.413
40	40	0.902
41	41	0.559
42	42	0.758
43	43	0.151
44	44	0.75
45	45	0.531
46	46	0.483
47	47	0.437
48	48	0.423
49	49	0.155
5	5	0.187
50	50	0.604
51	51	0.501
52	52	0.313
53	53	0.692
54	54	0.39
55	55	0.921
56	56	0.406
57	57	0.377
58	58	0.383
59	59	0.0266
6	6	0.179
60	60	0.181
61	61	0.602
62	62	0.342
63	63	0.0769
64	64	0.667
65	65	0.432
66	66	0.137
67	67	0.709
68	68	0.857
69	69	0.124
7	7	0.0995
70	70	0.304
71	71	0.0659
72	72	0.904
73	73	0.0466
74	74	0.256
75	75	0.543
76	76	0.862
77	77	0.224
78	78	0.0321
79	79	0.912
8	8	0.425
80	80	0.509
81	81	0.387
82	82	0.0874
83	83	0.283
84	84	0.21
85	85	0.00379
86	86	0.704
87	87	0.0543
88	88	0.534
89	89	0.0445
9	9	0.129
90	90	0.442
91	91	0.331
92	92	0.129
93	93	0.77
94	94	0.499
95	95	0.246
96	96	0.481
97	97	0.372
98	98	0.245
99	99	0.736

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11196

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011475 mouse heart- neonate N25 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000309 (mouse neonate N25 sample)
0011475 (mouse heart- neonate N25 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000948,UBERON:0001009,UBERON:0001048,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0003081,UBERON:0003084,UBERON:0003914,UBERON:0004120,UBERON:0004140,UBERON:0004141,UBERON:0004291,UBERON:0004535,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0005498,UBERON:0007005,UBERON:0007100
+|DRA_sample_Accession=CAGE@SAMD00005134
+|accession_numbers=CAGE;DRX008984;DRR009858;DRZ001283;DRZ002666;DRZ012633;DRZ014016
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000309,FF:0011475
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.15!138.76!Tbx20;;chr2:120365588..120365602,-!p2@Zfp106!2.04!177.18!Zfp106;;chr17:26978409..26978442,-!p1@Nkx2-5!1.80!61.69!Nkx2-5;;chr5:77543897..77543911,-!p2@Hopx!1.73!97.26!Hopx;;chr14:63864056..63864102,-!p1@Gata4!1.71!84.75!Gata4;;chr6:97879817..97879857,+!p2@Mitf!1.65!44.13!Mitf;;chr1:169548377..169548430,+!p1@Rxrg!1.65!43.69!Rxrg;;chr8:59799772..59799789,+!p1@Hand2!1.50!84.75!Hand2;;chr5:138187775..138187845,+!p7@Tsc22d4!1.50!41.06!Tsc22d4;;chr17:14011485..14011507,+!p2@Mllt4!1.47!28.32!Mllt4;;chr16:43363190..43363242,+!p2@Zbtb20!1.44!80.14!Zbtb20;;chr7:119885539..119885574,+!p3@Tead1!1.43!26.13!Tead1;;chr11:101755669..101755686,-!p1@Meox1!1.31!34.91!Meox1;;chr5:120285144..120285160,+!p1@Tbx5!1.22!15.59!Tbx5;;chr9:96159147..96159204,+!p2@Tfdp2!1.17!25.69!Tfdp2;;chr10:22539932..22539956,-!p1@Tcf21!1.12!32.49!Tcf21;;chr16:43363152..43363186,+!p3@Zbtb20!1.11!27.22!Zbtb20;;chr5:77544108..77544119,-!p7@Hopx!1.10!11.64!Hopx;;chr13:73397958..73397994,+!p1@Irx4!1.09!11.20!Irx4;;chr12:37835141..37835194,+!p1@Meox2!1.08!34.25!Meox2;;chr2:151969288..151969294,+!p1@Tcf15!1.05!15.81!Tcf15;;chr15:85566184..85566238,+!p1@Ppara!1.04!15.15!Ppara;;chr5:77544170..77544181,-!p6@Hopx!1.03!9.66!Hopx;;chr5:138199361..138199441,+!p2@Tsc22d4!1.01!17.56!Tsc22d4;;chr5:135582751..135582788,+!p1@Mlxipl!0.99!36.01!Mlxipl;;chr11:96690797..96690813,-!p1@Nfe2l1!0.96!160.27!Nfe2l1;;chr12:37835203..37835218,+!p3@Meox2!0.95!9.44!Meox2;;chr18:11052642..11052659,+!p1@Gata6!0.94!40.40!Gata6;;chr5:24107779..24107825,-!p1@Smarcd3!0.91!49.62!Smarcd3;;chr5:77524250..77524300,-!p1@Hopx!0.90!148.85!Hopx;;chr14:64562503..64562524,+!p1@Sox7!0.90!42.81!Sox7;;chr11:96690779..96690790,-!p3@Nfe2l1!0.90!17.34!Nfe2l1;;chr1:92895299..92895373,+!p2@Lrrfip1!0.89!146.44!Lrrfip1;;chr17:87153440..87153451,+!p4@Epas1!0.88!14.05!Epas1;;chr14:63864337..63864381,-!p6@Gata4!0.88!6.59!Gata4;;chr5:20387850..20387869,-!p1@Phtf2!0.87!69.60!Phtf2;;chr5:120285161..120285176,+!p2@Tbx5!0.87!6.37!Tbx5;;chr11:98636531..98636559,-!p1@Nr1d1!0.86!37.32!Nr1d1;;chr9:32443818..32443854,+!p2@Ets1!0.86!29.20!Ets1;;chr8:94325321..94325366,-!p1@Irx3!0.85!15.59!Irx3;;chr8:94325814..94325839,-!p2@Irx3!0.85!13.17!Irx3;;chr17:14011529..14011544,+!p7@Mllt4!0.85!6.15!Mllt4;;chr11:70043257..70043263,-!p1@Bcl6b!0.84!10.54!Bcl6b;;chr16:43364215..43364252,+!p14@Zbtb20!0.84!7.68!Zbtb20;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.83!24.37!Ppp1r13l;;chr14:67853425..67853454,+!p1@Ebf2!0.83!8.34!Ebf2;;chr4:133109285..133109308,+!p1@Nr0b2!0.83!5.71!Nr0b2;;chr2:168415815..168415872,-!p1@Nfatc2!0.82!32.71!Nfatc2;;chr4:135840573..135840601,+!p1@Zfp46!0.81!46.76!Zfp46;;chr4:150482563..150482655,-!p2@Camta1!0.81!20.64!Camta1;;chr16:43619057..43619078,+!p8@Zbtb20!0.81!11.86!Zbtb20;;chr17:26978449..26978458,-!p3@Nkx2-5!0.81!5.49!Nkx2-5;;chr5:77543935..77543947,-!p4@Hopx!0.81!5.49!Hopx;;chr17:87153462..87153473,+!p3@Epas1!0.80!21.30!Epas1;;chr13:99954640..99954681,+!p1@Zfp366!0.80!20.64!Zfp366;;chr14:63890459..63890484,-!p4@Gata4!0.80!5.27!Gata4;;chr1:189432907..189432926,+!p3@Esrrg!0.80!5.27!Esrrg;;chr7:148452314..148452329,-!p1@Irf7!0.79!39.08!Irf7;;chr4:120488308..120488366,-!p1@Nfyc!0.79!32.49!Nfyc;;chr4:148178559..148178603,+!p1@Casz1!0.78!15.37!Casz1;;chr16:95680889..95680991,-!p1@Erg!0.77!43.47!Erg;;chr1:191994550..191994623,-!p1@Prox1!0.77!36.66!Prox1;;chr4:122911086..122911112,+!p1@Heyl!0.76!61.25!Heyl;;chr9:87626083..87626108,-!p1@Tbx18!0.76!11.20!Tbx18;;chr11:23670750..23670789,-!p2@Rel!0.76!9.66!Rel;;chr6:83299445..83299490,+!p1@Bola3!0.75!213.62!Bola3;;chr2:152758901..152758925,-!p1@Foxs1!0.74!21.96!Foxs1;;chr16:43619101..43619151,+!p6@Zbtb20!0.74!11.64!Zbtb20;;chr16:43363968..43364001,+!p7@Zbtb20!0.74!8.78!Zbtb20;;chr8:94325273..94325288,-!p5@Irx3!0.74!5.71!Irx3;;chr2:181406327..181406350,-!p1@Sox18!0.73!154.12!Sox18;;chr6:115372058..115372085,+!p3@Pparg!0.73!4.39!Pparg;;chr5:138187867..138187879,+!p21@Tsc22d4!0.73!4.39!Tsc22d4;;chr17:14011545..14011564,+!p6@Mllt4!0.73!4.39!Mllt4;;chr17:87153028..87153049,+!p2@Epas1!0.72!99.24!Epas1;;chr17:46692970..46692977,-!p5@Srf!0.72!5.93!Srf;;chr18:11052485..11052508,+!p2@Gata6!0.71!12.73!Gata6;;chr1:52176406..52176433,+!p2@Stat1!0.71!10.98!Stat1;;chr16:43363837..43363842,+!p11@Zbtb20!0.71!8.34!Zbtb20;;chr5:20387832..20387841,-!p2@Phtf2!0.71!7.46!Phtf2;;chr12:37835248..37835260,+!p4@Meox2!0.71!4.17!Meox2;;chr1:52176378..52176401,+!p3@Stat1!0.70!13.17!Stat1;;chr9:96653072..96653154,-!p1@Zbtb38!0.69!11.42!Zbtb38;;chr9:63514630..63514652,-!p8@Smad3!0.69!3.95!Smad3;;chr12:87762578..87762612,+!p1@Esrrb!0.69!3.95!Esrrb;;chr7:119822957..119822980,+!p2@Tead1!0.68!21.08!Tead1;;chr7:74517982..74518012,-!p2@Mef2a!0.68!7.68!Mef2a;;chr16:43364258..43364270,+!p27@Zbtb20!0.68!3.73!Zbtb20;;chr11:100720767..100720797,+!p4@Stat5a!0.68!3.73!Stat5a;;chr17:87153240..87153254,+!p1@Epas1!0.67!83.43!Epas1;;chr14:67853457..67853482,+!p2@Ebf2!0.67!5.49!Ebf2;;chr9:121669118..121669179,+!p1@Zfp651!0.66!44.35!Zfp651;;chr7:123174485..123174514,-!p6@Sox6!0.66!4.61!Sox6;;chr6:145814003..145814056,-!p1@Bhlhe41!0.65!11.42!Bhlhe41;;chr13:64253718..64253763,-!p2@Zfp367!0.65!10.10!Zfp367;;chr6:97879802..97879816,+!p5@Mitf!0.65!3.51!Mitf;;chr1:189432881..189432903,+!p2@Esrrg!0.65!3.51!Esrrg;;chr17:26978521..26978536,-!p2@Nkx2-5!0.65!3.51!Nkx2-5;;chr16:42907676..42907797,+!p1@Zbtb20!0.64!51.16!Zbtb20;;chr18:11052606..11052633,+!p4@Gata6!0.64!9.66!Gata6;;chr13:83663902..83663927,+!p1@Mef2c!0.63!92.87!Mef2c;;chr6:90412582..90412601,+!p1@Klf15!0.63!17.78!Klf15;;chr12:37835120..37835133,+!p2@Meox2!0.63!5.05!Meox2;;chr7:52963269..52963305,+!p4@Dbp!0.63!4.83!Dbp;;chr10:62328027..62328038,-!p6@Tet1!0.63!3.95!Tet1;;chr16:43364103..43364130,+!p30@Zbtb20!0.63!3.29!Zbtb20;;chr6:115372099..115372121,+!p5@Pparg!0.63!3.29!Pparg;;chr6:83301243..83301258,+!p2@Bola3!0.63!3.29!Bola3;;chr3:94176733..94176794,+!p1@Rorc!0.62!29.42!Rorc;;chr2:173044380..173044432,-!p1@Zbp1!0.62!8.56!Zbp1;;chr1:87546583..87546595,+!p1@Sp100!0.62!4.83!Sp100;;chr9:51021788..51021802,+!p1@Pou2af1!0.62!3.95!Pou2af1;;chr8:90328310..90328362,-!p3@Zfp423!0.62!3.73!Zfp423;;chr4:151235807..151235870,-!p1@Camta1!0.61!59.72!Camta1;;chr18:3281034..3281104,-!p1@Crem!0.61!25.91!Crem;;chr4:148178529..148178548,+!p3@Casz1!0.60!7.90!Casz1;;chr13:99954688..99954710,+!p2@Zfp366!0.60!6.37!Zfp366;;chr8:79426176..79426275,+!p1@Nr3c2!0.59!17.12!Nr3c2;;chr5:125538737..125538781,-!p2@Ncor2!0.59!12.29!Ncor2;;chr5:77524231..77524245,-!p3@Hopx!0.59!8.34!Hopx;;chr11:100683839..100683890,-!p2@Stat5b!0.59!7.68!Stat5b;;chr5:77524304..77524315,-!p5@Hopx!0.59!6.81!Hopx;;chr8:94325847..94325869,-!p3@Irx3!0.59!5.05!Irx3;;chr9:96159210..96159221,+!p10@Tfdp2!0.59!2.85!Tfdp2;;chr14:63890691..63890718,-!p8@Gata4!0.59!2.85!Gata4;;chr14:17408022..17408043,-!p6@Rarb!0.59!2.85!Rarb;;chr1:172797892..172797915,-!p1@Atf6!0.58!95.94!Atf6;;chr10:62327990..62328025,-!p2@Tet1!0.58!4.83!Tet1;;chr7:123174606..123174636,-!p5@Sox6!0.58!3.73!Sox6;;chr17:46693107..46693137,-!p1@Srf!0.57!32.49!Srf;;chr18:5593564..5593584,+!p2@Zeb1!0.57!3.29!Zeb1;;chr2:180069370..180069409,-!p1@Gata5!0.57!3.29!Gata5;;chr1:39250584..39250643,+!p1@Npas2!0.56!16.25!Npas2;;chr11:74981654..74981658,-!p1@Hic1!0.56!12.51!Hic1;;chr13:30841099..30841116,+!p1@Irf4!0.56!4.61!Irf4;;chr4:135840623..135840632,+!p5@Zfp46!0.56!3.73!Zfp46;;chr19:23215509..23215523,+!p4@Klf9!0.56!3.51!Klf9;;chr5:120285130..120285141,+!p3@Tbx5!0.56!2.63!Tbx5;;chr14:17408052..17408073,-!p5@Rarb!0.56!2.63!Rarb;;chr4:97444471..97444514,+!p1@Nfia!0.55!86.06!Nfia;;chr10:92773591..92773623,-!p1@Elk3!0.55!72.23!Elk3;;chr13:83663868..83663894,+!p2@Mef2c!0.55!46.54!Mef2c;;chr11:16908650..16908690,-!p1@Plek!0.55!19.10!Plek;;chr17:46693078..46693097,-!p3@Srf!0.55!12.73!Srf;;chr14:18493386..18493464,+!p1@Thrb!0.55!11.86!Thrb;;chr14:19071466..19071550,-!p1@Nr1d2!0.54!20.86!Nr1d2;;chr4:154010918..154010931,-!p1@Prdm16!0.54!8.56!Prdm16;;chr16:42907656..42907675,+!p10@Zbtb20!0.54!6.15!Zbtb20;;chr2:104966766..104966786,+!p1@Wt1!0.54!4.39!Wt1;;chr7:123177377..123177409,-!p7@Sox6!0.54!3.29!Sox6;;chr8:74842952..74842970,+!p1@Klf2!0.53!209.89!Klf2;;chr14:17407970..17408015,-!p2@Rarb!0.53!7.68!Rarb;;chr15:85566014..85566045,+!p3@Ppara!0.53!3.51!Ppara;;chr1:191993385..191993405,-!p3@Prox1!0.53!2.42!Prox1;;chr4:154010882..154010889,-!p10@Prdm16!0.53!2.42!Prdm16;;chr12:87702062..87702081,+!p4@Esrrb!0.53!2.42!Esrrb;;chr13:73398004..73398017,+!p2@Irx4!0.53!2.42!Irx4;;chr11:90252223..90252240,-!p1@Hlf!0.52!24.37!Hlf;;chr4:118846454..118846506,-!p2@Zfp691!0.52!6.37!Zfp691;;chr7:144506077..144506128,-!p1@Ebf3!0.52!6.37!Ebf3;;chr7:119822892..119822901,+!p7@Tead1!0.52!3.29!Tead1;;chr19:6996243..6996293,-!p1@Esrra!0.51!32.05!Esrra;;chr7:74517658..74517731,-!p1@Mef2a!0.50!129.75!Mef2a;;chr10:80889867..80889924,-!p1@Nfic!0.50!81.23!Nfic;;chr4:118846783..118846826,-!p1@Zfp691!0.50!39.30!Zfp691;;chr11:100712053..100712077,-!p3@Stat5b!0.50!4.83!Stat5b;;chr1:38721792..38721845,-!p1@Aff3!0.50!2.85!Aff3;;chr12:87702380..87702394,+!p6@Esrrb!0.50!2.20!Esrrb;;chr14:63890660..63890687,-!p7@Gata4!0.50!2.20!Gata4;;chr13:83712735..83712761,+!p9@Mef2c!0.50!2.20!Mef2c;;chr11:100720806..100720820,+!p6@Stat5a!0.50!2.20!Stat5a;;chr8:94325779..94325791,-!p7@Irx3!0.50!2.20!Irx3;;chr10:67599319..67599360,-!p2@Arid5b!0.49!30.74!Arid5b;;chr11:44431687..44431706,+!p2@Ebf1!0.49!12.51!Ebf1;;chr18:11052456..11052477,+!p3@Gata6!0.49!8.12!Gata6;;chr7:119822915..119822936,+!p5@Tead1!0.49!3.95!Tead1;;chr13:72101178..72101203,-!p1@Irx1!0.49!3.73!Irx1;;chr2:120365219..120365232,-!p4@Zfp106!0.49!3.29!Zfp106;;chr2:77654650..77654685,-!p3@Zfp385b!0.49!2.85!Zfp385b;;chr2:120389531..120389614,-!p1@Zfp106!0.48!203.96!Zfp106;;chr16:95924055..95924077,+!p1@Ets2!0.48!150.17!Ets2;;chr17:47873985..47874056,+!p1@Tfeb!0.48!22.17!Tfeb;;chr12:84828663..84828679,-!p1@Dpf3!0.48!20.86!Dpf3;;chr3:95238432..95238455,+!p2@Arnt!0.48!15.37!Arnt;;chr6:97757008..97757061,+!p1@Mitf!0.48!11.20!Mitf;;chr18:69681439..69681456,+!p7@Tcf4!0.48!6.37!Tcf4;;chr3:30408603..30408668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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0004140,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:1351-25D3
-|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011475
+|is_a=EFO:0002091;;FF:0011475
+|is_obsolete=
+|library_id=CNhs11196
+|library_id_phase_based=2:CNhs11196
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1351
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1351
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N25.CNhs11196.1351-25D3.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N25.CNhs11196.1351-25D3.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N25.CNhs11196.1351-25D3.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N25.CNhs11196.1351-25D3.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N25.CNhs11196.1351-25D3.mm9.nobarcode.rdna.fa.gz
 |name=heart, neonate N25
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11196,LSID746,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=-0.0746957705439335,0,0.00650711679959285,0,0.0861996515928926,0.0861996515928926,0.756210617749825,0,0,0,0,0.073751802374541,0,0,0,0,0,0,0.0818485919630403,0,0,0,0,0,0.0861996515928926,0,0,0,0,0,0,0,0.282175878695746,0,0.0861996515928926,0,0,0,0.00659376731252265,0,-0.111898923276981,-0.398282584598297,-0.0501137943985995,0,0,0,0,0,0,0,0,0,0,0.0861996515928926,0,0.438533431011036,0,0,0,0,0.0861996515928926,0,0,0,0,0.0103254434708441,0.023148600736861,0.249806130223673,0,0.00650711679959285,0.0861996515928926,0.158091042771083,-0.00117702084275817,0,0,0,0,-0.0637507967509517,-0.122289099117607,0.00736805675298517,0,0,0,0,0.0430998257964463,0,0.0720730126766999,0.328032794948478,0.114835656897698,0.0238933295761556,0,0,0,0
 |rna_box=25
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=heart
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1351-25D3;search_select_hide=table117:1351-25D3
 }}

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FF:1351-25D3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:01, 4 June 2020

CNhs11196

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0