FF:1261-18D4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005445 | ||
|accession_numbers=CAGE;DRX008958;DRR009832;DRZ001257;DRZ002640;DRZ012607;DRZ013990 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0004456,UBERON:0001456 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000300,FF:0011521 | |||
|comment=fantom:1261-18D4 | |comment=fantom:1261-18D4 | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:19185671..19185693,-!p1@Rorb!2.43!615.63!Rorb;;chr2:79296783..79296801,-!p1@Neurod1!2.17!147.99!Neurod1;;chr10:62562530..62562540,+!p1@Atoh7!2.13!132.77!Atoh7;;chr18:66098702..66098742,-!p1@Rax!2.07!116.34!Rax;;chr3:127336052..127336058,+!p1@Neurog2!1.98!94.64!Neurog2;;chr2:105509045..105509071,+!p1@Pax6!1.96!90.42!Pax6;;chr4:154335024..154335039,+!p1@Hes5!1.89!92.23!Hes5;;chr7:16465229..16465249,-!p1@Crx!1.87!72.34!Crx;;chr10:86956396..86956411,-!p1@Ascl1!1.82!97.96!Ascl1;;chr10:129717274..129717298,-!p1@Neurod4!1.81!64.20!Neurod4;;chr14:49287186..49287225,-!p1@Otx2!1.76!56.82!Otx2;;chr17:86020115..86020128,+!p2@Six3!1.75!55.46!Six3;;chr2:105522662..105522687,+!p2@Pax6!1.69!48.07!Pax6;;chr17:86020156..86020183,+!p1@Six3!1.64!42.95!Six3;;chr10:76285563..76285576,-!p2@Pcbp3!1.62!40.39!Pcbp3;;chr14:49284773..49284790,-!p2@Otx2!1.61!40.09!Otx2;;chr12:74040861..74040875,+!p1@Six6!1.59!38.13!Six6;;chr1:19199236..19199258,+!p1@Tfap2b!1.56!35.42!Tfap2b;;chr12:85910771..85910785,+!p1@Vsx2!1.55!34.51!Vsx2;;chr2:38206744..38206766,+!p1@Lhx2!1.53!39.48!Lhx2;;chr2:38206580..38206600,+!p2@Lhx2!1.52!39.33!Lhx2;;chr3:101814061..101814094,+!p1@Nhlh2!1.52!32.10!Nhlh2;;chr5:35731493..35731531,+!p1@Hmx1!1.46!27.88!Hmx1;;chr17:86020510..86020589,+!p3@Six3!1.45!27.43!Six3;;chr2:19367259..19367278,+!p1@Ptf1a!1.41!24.72!Ptf1a;;chr3:34548909..34548927,+!p1@Sox2!1.35!35.72!Sox2;;chr12:74040895..74040916,+!p2@Six6!1.35!21.25!Six6;;chr14:104867201..104867258,-!p1@Pou4f1!1.34!29.39!Pou4f1;;chr9:74709695..74709722,+!p1@Onecut1!1.31!19.29!Onecut1;;chr6:83661226..83661282,+!p1@Vax2!1.30!18.99!Vax2;;chr14:18814020..18814023,+!p3@Thrb!1.30!18.99!Thrb;;chr19:19185697..19185711,-!p2@Rorb!1.29!23.36!Rorb;;chr2:146047829..146047847,+!p1@Insm1!1.26!30.89!Insm1;;chr4:150503457..150503498,-!p3@Camta1!1.26!19.14!Camta1;;chr17:25707623..25707639,-!p1@Sox8!1.25!71.43!Sox8;;chr3:99057269..99057306,+!p1@Tbx15!1.24!19.89!Tbx15;;chr4:114598669..114598674,-!p1@Foxe3!1.23!15.97!Foxe3;;chr4:21612929..21612952,-!p1@Prdm13!1.23!15.82!Prdm13;;chr2:105515586..105515606,+!p4@Pax6!1.23!15.82!Pax6;;chr13:117099847..117099907,-!p1@Isl1!1.21!27.88!Isl1;;chr10:42303385..42303401,-!p1@Nr2e1!1.21!15.37!Nr2e1;;chr17:86012772..86012825,+!p4@Six3!1.19!14.62!Six3;;chr1:136186574..136186592,+!p1@Myog!1.19!14.32!Myog;;chr1:19202352..19202354,+!p2@Tfap2b!1.18!14.17!Tfap2b;;chr10:20880698..20880717,-!p3@Myb!1.15!20.35!Myb;;chr10:20880731..20880775,-!p2@Myb!1.14!26.98!Myb;;chr10:129717308..129717319,-!p2@Neurod4!1.14!12.81!Neurod4;;chr9:55388997..55389016,+!p1@Isl2!1.14!12.66!Isl2;;chr12:28027561..28027591,-!p1@Sox11!1.12!79.87!Sox11;;chr13:40829137..40829205,-!p1@Tfap2a!1.12!13.86!Tfap2a;;chr13:83643159..83643226,+!p3@Mef2c!1.12!12.06!Mef2c;;chr5:114723781..114723795,-!p1@Foxn4!1.11!11.91!Foxn4;;chr2:163028808..163028869,+!p1@Tox2!1.10!41.29!Tox2;;chr4:97248607..97248649,+!p15@Nfia!1.10!11.45!Nfia;;chr12:34642510..34642530,+!p1@Twist1!1.09!35.72!Twist1;;chr3:128916868..128916890,+!p1@Pitx2!1.09!15.52!Pitx2;;chr16:91225808..91225824,+!p1@Olig2!1.09!11.30!Olig2;;chr13:40826150..40826167,-!p3@Tfap2a!1.08!12.36!Tfap2a;;chr2:151907546..151907561,+!p1@Scrt2!1.07!10.85!Scrt2;;chr8:12395603..12395621,+!p1@Sox1!1.07!10.70!Sox1;;chr10:12810631..12810649,+!p1@Plagl1!1.05!271.72!Plagl1;;chr11:101755669..101755686,-!p1@Meox1!1.05!18.54!Meox1;;chr16:25801993..25802014,+!p1@Trp63!1.05!10.25!Trp63;;chr17:86020137..86020149,+!p5@Six3!1.05!10.10!Six3;;chr14:49282415..49282426,-!p4@Otx2!1.05!10.10!Otx2;;chr2:105515793..105515808,+!p3@Pax6!1.03!9.80!Pax6;;chr2:105515635..105515661,+!p5@Pax6!1.03!9.80!Pax6;;chr14:34791937..34791977,-!p1@Zfp488!1.01!9.34!Zfp488;;chr10:44178521..44178557,-!p1@Prdm1!1.00!16.13!Prdm1;;chr10:20880629..20880683,-!p1@Myb!0.99!25.77!Myb;;chr10:126778916..126778974,-!p1@Gli1!0.98!19.59!Gli1;;chr9:91260594..91260612,-!p1@Zic1!0.98!8.59!Zic1;;chr5:106887474..106887489,-!p1@Barhl2!0.97!8.29!Barhl2;;chr18:64499706..64499721,+!p2@Onecut2!0.96!11.60!Onecut2;;chr9:31720843..31720888,-!p1@Barx2!0.96!9.04!Barx2;;chr11:21901608..21901634,-!p1@Otx1!0.96!8.14!Otx1;;chr1:189821714..189821761,+!p1@Esrrg!0.95!15.07!Esrrg;;chr15:103164702..103164778,-!p3@Zfp385a!0.95!9.34!Zfp385a;;chr9:91260616..91260653,-!p2@Zic1!0.95!7.99!Zic1;;chr14:49287107..49287125,-!p3@Otx2!0.95!7.84!Otx2;;chr14:122874619..122874634,+!p1@Zic2!0.95!7.84!Zic2;;chr1:19199151..19199170,+!p3@Tfap2b!0.95!7.84!Tfap2b;;chr7:6649134..6649167,-!p1@Zim1!0.94!42.80!Zim1;;chr15:35225845..35225867,+!p1@Osr2!0.94!20.19!Osr2;;chr15:76352832..76352900,-!p1@Scrt1!0.94!7.69!Scrt1;;chr13:40825465..40825469,-!p2@Tfap2a!0.94!7.69!Tfap2a;;chr10:42303452..42303470,-!p2@Nr2e1!0.93!7.54!Nr2e1;;chr6:70906450..70906454,+!p1@Foxi3!0.92!7.23!Foxi3;;chr7:38554763..38554780,-!p1@Zfp536!0.91!13.41!Zfp536;;chr4:124334894..124334899,+!p1@Pou3f1!0.91!9.49!Pou3f1;;chrX:58146612..58146615,-!p1@Sox3!0.91!7.08!Sox3;;chr3:95032091..95032183,-!p1@Mllt11!0.90!62.54!Mllt11;;chr18:55149735..55149776,-!p4@Zfp608!0.90!17.48!Zfp608;;chr9:96159147..96159204,+!p2@Tfdp2!0.90!13.26!Tfdp2;;chr1:140739014..140739032,-!p1@Lhx9!0.90!9.04!Lhx9;;chr2:71384802..71384815,-!p1@Dlx2!0.90!8.74!Dlx2;;chr18:66098673..66098684,-!p2@Rax!0.90!6.93!Rax;;chr13:99124189..99124205,+!p1@Foxd1!0.89!10.55!Foxd1;;chr10:44178375..44178390,-!p2@Prdm1!0.89!9.34!Prdm1;;chr9:118387300..118387317,+!p1@Eomes!0.89!6.78!Eomes;;chr13:72766250..72766273,+!p1@Irx2!0.88!10.40!Irx2;;chr4:148178559..148178603,+!p1@Casz1!0.87!19.44!Casz1;;chr2:120365588..120365602,-!p2@Zfp106!0.87!11.00!Zfp106;;chr1:9690398..9690410,-!p2@Mybl1!0.87!7.84!Mybl1;;chr7:53631837..53631850,+!p1@Myod1!0.87!6.48!Myod1;;chr10:102491405..102491416,-!p1@Alx1!0.87!6.48!Alx1;;chr10:42303410..42303422,-!p3@Nr2e1!0.87!6.33!Nr2e1;;chr1:6720216..6720232,+!p1@St18!0.87!6.33!St18;;chr2:65683890..65683907,+!p1@Csrnp3!0.86!12.36!Csrnp3;;chr1:179374784..179374800,+!p2@Zfp238!0.86!7.38!Zfp238;;chr10:106931775..106931798,-!p1@Myf6!0.86!6.18!Myf6;;chr17:86020468..86020504,+!p6@Six3!0.86!6.18!Six3;;chr4:97248473..97248496,+!p16@Nfia!0.85!6.03!Nfia;;chr4:13670499..13670526,+!p2@Runx1t1!0.84!13.71!Runx1t1;;chr1:19199119..19199134,+!p4@Tfap2b!0.84!5.88!Tfap2b;;chr1:19199095..19199114,+!p5@Tfap2b!0.84!5.88!Tfap2b;;chr19:7342725..7342784,+!p1@Rcor2!0.83!25.32!Rcor2;;chr7:116154364..116154444,+!p1@Tub!0.83!10.40!Tub;;chr4:97248652..97248671,+!p19@Nfia!0.83!5.73!Nfia;;chr11:121380640..121380655,-!p1@Zfp750!0.82!9.65!Zfp750;;chr10:67364011..67364018,-!p5@Zfp365!0.82!5.58!Zfp365;;chr5:114724042..114724090,-!p2@Foxn4!0.82!5.58!Foxn4;;chr14:98568971..98569025,-!p1@Dach1!0.81!44.91!Dach1;;chr4:150482563..150482655,-!p2@Camta1!0.81!20.65!Camta1;;chr11:85646263..85646278,+!p2@Tbx2!0.81!14.92!Tbx2;;chr4:135129538..135129558,-!p1@Grhl3!0.81!8.44!Grhl3;;chr15:76352677..76352737,-!p3@Scrt1!0.81!5.43!Scrt1;;chr2:181501988..181502026,+!p3@Myt1!0.81!5.43!Myt1;;chr7:17647736..17647772,-!p1@Hif3a!0.80!20.35!Hif3a;;chr13:72766279..72766296,+!p2@Irx2!0.80!8.14!Irx2;;chrX:55283799..55283813,+!p1@Zic3!0.80!5.27!Zic3;;chr19:46222859..46222876,-!p1@Pitx3!0.80!5.27!Pitx3;;chr12:74147689..74147711,-!p1@Six1!0.79!11.91!Six1;;chr8:24780125..24780143,+!p1@Zmat4!0.79!7.69!Zmat4;;chr11:98789140..98789168,+!p5@Rara!0.78!8.44!Rara;;chr7:144505957..144505972,-!p2@Ebf3!0.78!6.33!Ebf3;;chr9:24578720..24578735,-!p1@Tbx20!0.78!4.97!Tbx20;;chr1:19199079..19199092,+!p7@Tfap2b!0.78!4.97!Tfap2b;;chr2:65768174..65768247,+!p2@Csrnp3!0.78!4.97!Csrnp3;;chr10:106923133..106923146,-!p1@Myf5!0.78!4.97!Myf5;;chr4:13678723..13678739,+!p10@Runx1t1!0.78!4.97!Runx1t1;;chr7:144506077..144506128,-!p1@Ebf3!0.77!11.91!Ebf3;;chr1:165243591..165243625,-!p2@Prrx1!0.77!7.69!Prrx1;;chr19:7342786..7342803,+!p2@Rcor2!0.77!6.78!Rcor2;;chr17:48015645..48015689,-!p9@Foxp4!0.77!6.48!Foxp4;;chr2:151906844..151906873,+!p3@Scrt2!0.77!4.82!Scrt2;;chr2:172375081..172375105,+!p1@Tfap2c!0.77!4.82!Tfap2c;;chr3:34548946..34548972,+!p2@Sox2!0.76!5.27!Sox2;;chr9:106356211..106356242,+!p1@Pcbp4!0.75!99.92!Pcbp4;;chr14:98568761..98568814,-!p2@Dach1!0.75!35.11!Dach1;;chr4:6917921..6917970,-!p2@Tox!0.75!14.02!Tox;;chr4:148178529..148178548,+!p3@Casz1!0.75!11.60!Casz1;;chr10:44178493..44178520,-!p3@Prdm1!0.75!6.78!Prdm1;;chr1:169528720..169528749,+!p6@Rxrg!0.75!4.67!Rxrg;;chr1:19199221..19199234,+!p6@Tfap2b!0.75!4.67!Tfap2b;;chr18:66098752..66098757,-!p3@Rax!0.75!4.67!Rax;;chr4:109650609..109650653,+!p1@Dmrta2!0.75!4.67!Dmrta2;;chr11:85646303..85646329,+!p1@Tbx2!0.74!32.70!Tbx2;;chr7:38557752..38557793,-!p3@Zfp536!0.74!5.43!Zfp536;;chr17:86087592..86087615,-!p1@Six2!0.74!4.52!Six2;;chr17:86020186..86020195,+!p9@Six3!0.74!4.52!Six3;;chr10:44178474..44178487,-!p4@Prdm1!0.73!6.63!Prdm1;;chr8:107793737..107793757,+!p2@Hsf4!0.73!5.12!Hsf4;;chr2:81893535..81893548,+!p1@Zfp804a!0.73!4.37!Zfp804a;;chr13:83643232..83643254,+!p5@Mef2c!0.73!4.37!Mef2c;;chr10:102491237..102491291,-!p2@Alx1!0.73!4.37!Alx1;;chr12:12948633..12948651,-!p1@Mycn!0.71!44.91!Mycn;;chr9:87626083..87626108,-!p1@Tbx18!0.71!9.95!Tbx18;;chr1:93309740..93309811,-!p1@Hes6!0.70!90.88!Hes6;;chr8:94881733..94881790,+!p1@Irx5!0.70!8.44!Irx5;;chr18:64499674..64499696,+!p1@Onecut2!0.70!7.38!Onecut2;;chr2:103143336..103143367,-!p1@Ehf!0.70!6.93!Ehf;;chr1:19202185..19202187,+!p9@Tfap2b!0.70!4.07!Tfap2b;;chr3:128902837..128902861,+!p3@Pitx2!0.70!4.07!Pitx2;;chr3:99057256..99057268,+!p3@Tbx15!0.70!4.07!Tbx15;;chr11:44430989..44431015,+!p4@Ebf1!0.69!7.38!Ebf1;;chr2:17976799..17976829,+!p5@Mllt10!0.69!4.97!Mllt10;;chr9:98855868..98855895,+!p1@Foxl2!0.69!3.92!Foxl2;;chr12:30219426..30219506,+!p2@Myt1l!0.69!3.92!Myt1l;;chr3:66785857..66785873,-!p1@Shox2!0.69!3.92!Shox2;;chr9:106356243..106356264,+!p2@Pcbp4!0.68!18.39!Pcbp4;;chr18:65741935..65741964,+!p2@Zfp532!0.68!11.60!Zfp532;;chr12:3891753..3891801,+!p4@Dnmt3a!0.68!6.63!Dnmt3a;;chr15:103085660..103085681,-!p1@Nfe2!0.68!6.03!Nfe2;;chr13:55932591..55932622,-!p1@Pitx1!0.68!4.67!Pitx1;;chr11:94981424..94981439,+!p1@Dlx3!0.68!4.37!Dlx3;;chr14:18814147..18814153,+!p5@Thrb!0.68!3.77!Thrb;;chr15:76352740..76352781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4!2.26!Sfpq;;chr17:3557785..3557797,-!p3@Tfb1m!0.24!2.26!Tfb1m;;chr2:44965788..44965815,-!p11@Zeb2!0.24!2.11!Zeb2;;chr9:68501522..68501538,+!p4@Rora!0.24!2.11!Rora;;chr7:148513637..148513648,-!p6@Deaf1!0.24!1.96!Deaf1;;chr11:85646427..85646451,+!p4@Tbx2!0.24!1.96!Tbx2;;chr11:90250944..90250982,-!p2@Hlf!0.24!1.81!Hlf;;chr15:50721211..50721234,-!p6@Trps1!0.24!1.81!Trps1;;chr2:156666727..156666753,+!p2@Tgif2!0.24!1.51!Tgif2;;chr12:25257114..25257131,+!p4@Grhl1!0.24!1.21!Grhl1;;chr9:71958979..71959032,-!p4@Tcf12!0.24!1.21!Tcf12;;chr7:19608891..19608895,-!p1@Foxa3!0.24!1.21!Foxa3;;chr4:32325955..32325971,+!p3@Bach2!0.24!1.21!Bach2;;chr4:135129447..135129467,-!p2@Grhl3!0.24!1.05!Grhl3;;chr2:180377386..180377462,-!p1@Tcfl5!0.24!1.05!Tcfl5;;chr1:38684414..38684427,-!p7@Aff3!0.24!1.05!Aff3;;chr1:179375791..179375803,+!p10@Zfp238!0.24!0.75!Zfp238;;chr2:65768149..65768173,+!p4@Csrnp3!0.24!0.75!Csrnp3;;chr2:32229906..32229942,+!p3@Ciz1!0.24!0.75!Ciz1;;chr2:147190725..147190747,+!p2@Pax1!0.24!0.75!Pax1;;chr1:157589255..157589266,-!p2@Lhx4!0.24!0.75!Lhx4;;chr19:59533429..59533470,+!p4@Emx2!0.24!0.75!Emx2;;chr1:179374764..179374776,+!p5@Zfp238!0.24!0.75!Zfp238;;chr2:105522840..105522844,+!p22@Pax6!0.24!0.75!Pax6;;chr4:107107224..107107259,+!p2@Glis1!0.24!0.75!Glis1;;chr4:84321317..84321332,-!p4@Bnc2!0.24!0.75!Bnc2;;chr2:74550015..74550057,+!p2@Hoxd3!0.24!0.75!Hoxd3;;chr4:22415600..22415616,-!p3@Pou3f2!0.24!0.75!Pou3f2;;chr12:74147860..74147888,-!p2@Six1!0.24!0.75!Six1;;chr13:99124236..99124243,+!p2@Foxd1!0.24!0.75!Foxd1;;chr13:83643302..83643309,+!p12@Mef2c!0.24!0.75!Mef2c;;chr13:48758276..48758291,+!p1@Barx1!0.24!0.75!Barx1;;chr14:122874718..122874729,+!p3@Zic2!0.24!0.75!Zic2;;chr12:30213392..30213414,+!p8@Myt1l!0.24!0.75!Myt1l;;chr12:12947406..12947418,-!p5@Mycn!0.24!0.75!Mycn;;chrX:83437105..83437121,+!p1@Nr0b1!0.24!0.75!Nr0b1;;chrX:55283827..55283838,+!p3@Zic3!0.24!0.75!Zic3;;chr16:25684232..25684285,+!p2@Trp63!0.24!0.75!Trp63;;chr16:95808192..95808202,-!p2@Erg!0.24!0.75!Erg;;chr18:76400957..76400968,+!p12@Smad2!0.24!0.75!Smad2;;chr6:28347999..28348023,-!p3@Zfp800!0.24!0.75!Zfp800;;chr7:144506051..144506062,-!p5@Ebf3!0.24!0.75!Ebf3;;chr5:35731612..35731623,+!p3@Hmx1!0.24!0.75!Hmx1;;chr10:67375342..67375365,-!p3@Zfp365!0.24!0.75!Zfp365;;chr9:31721051..31721068,-!p3@Barx2!0.24!0.75!Barx2;;chr9:96632719..96632745,-!p7@Zbtb38!0.24!0.75!Zbtb38;;chr8:94325779..94325791,-!p7@Irx3!0.24!0.75!Irx3;;chr8:12395843..12395852,+!p7@Sox1!0.24!0.75!Sox1;;chr9:31720903..31720918,-!p2@Barx2!0.24!0.75!Barx2;;chr3:151873433..151873498,+!p1@Fubp1!0.23!202.10!Fubp1;;chr4:135699731..135699747,+!p1@Id3!0.23!174.06!Id3;;chr2:48805082..48805137,+!p1@Mbd5!0.23!31.65!Mbd5;;chr9:19426523..19426584,+!p1@Zfp317!0.23!22.00!Zfp317;;chrX:20639107..20639188,-!p1@Zfp182!0.23!19.14!Zfp182;;chr8:108160490..108160512,+!p2@Ctcf!0.23!12.06!Ctcf;;chr13:67601387..67601448,-!p2@Zfp58!0.23!12.06!Zfp58;;chr2:72818459..72818528,-!p3@Sp3!0.23!10.55!Sp3;;chr2:156665817..156665877,+!p1@Tgif2!0.23!9.19!Tgif2;;chr7:6238191..6238224,+!p1@Zfp667!0.23!8.44!Zfp667;;chr13:21454695..21454752,+!p1@Zscan12!0.23!8.14!Zscan12;;chr7:50834947..50835010,+!p2@Zfp719!0.23!7.54!Zfp719;;chr19:28086045..28086080,-!p4@Rfx3!0.23!6.63!Rfx3;;chr1:64579440..64579451,+!p4@Creb1!0.23!4.52!Creb1;;chr18:79306158..79306249,-!p1@Setbp1!0.23!4.37!Setbp1;;chr14:52634536..52634572,-!p4@Zfp219!0.23!3.77!Zfp219;;chr2:91864300..91864379,-!p2@Creb3l1!0.23!3.62!Creb3l1;;chr15:50720601..50720630,-!p2@Trps1!0.23!2.86!Trps1;;chr1:170361730..170361769,-!p7@Pbx1!0.23!2.71!Pbx1;; | |expression_enrichment_score=chr19:19185671..19185693,-!p1@Rorb!2.43!615.63!Rorb;;chr2:79296783..79296801,-!p1@Neurod1!2.17!147.99!Neurod1;;chr10:62562530..62562540,+!p1@Atoh7!2.13!132.77!Atoh7;;chr18:66098702..66098742,-!p1@Rax!2.07!116.34!Rax;;chr3:127336052..127336058,+!p1@Neurog2!1.98!94.64!Neurog2;;chr2:105509045..105509071,+!p1@Pax6!1.96!90.42!Pax6;;chr4:154335024..154335039,+!p1@Hes5!1.89!92.23!Hes5;;chr7:16465229..16465249,-!p1@Crx!1.87!72.34!Crx;;chr10:86956396..86956411,-!p1@Ascl1!1.82!97.96!Ascl1;;chr10:129717274..129717298,-!p1@Neurod4!1.81!64.20!Neurod4;;chr14:49287186..49287225,-!p1@Otx2!1.76!56.82!Otx2;;chr17:86020115..86020128,+!p2@Six3!1.75!55.46!Six3;;chr2:105522662..105522687,+!p2@Pax6!1.69!48.07!Pax6;;chr17:86020156..86020183,+!p1@Six3!1.64!42.95!Six3;;chr10:76285563..76285576,-!p2@Pcbp3!1.62!40.39!Pcbp3;;chr14:49284773..49284790,-!p2@Otx2!1.61!40.09!Otx2;;chr12:74040861..74040875,+!p1@Six6!1.59!38.13!Six6;;chr1:19199236..19199258,+!p1@Tfap2b!1.56!35.42!Tfap2b;;chr12:85910771..85910785,+!p1@Vsx2!1.55!34.51!Vsx2;;chr2:38206744..38206766,+!p1@Lhx2!1.53!39.48!Lhx2;;chr2:38206580..38206600,+!p2@Lhx2!1.52!39.33!Lhx2;;chr3:101814061..101814094,+!p1@Nhlh2!1.52!32.10!Nhlh2;;chr5:35731493..35731531,+!p1@Hmx1!1.46!27.88!Hmx1;;chr17:86020510..86020589,+!p3@Six3!1.45!27.43!Six3;;chr2:19367259..19367278,+!p1@Ptf1a!1.41!24.72!Ptf1a;;chr3:34548909..34548927,+!p1@Sox2!1.35!35.72!Sox2;;chr12:74040895..74040916,+!p2@Six6!1.35!21.25!Six6;;chr14:104867201..104867258,-!p1@Pou4f1!1.34!29.39!Pou4f1;;chr9:74709695..74709722,+!p1@Onecut1!1.31!19.29!Onecut1;;chr6:83661226..83661282,+!p1@Vax2!1.30!18.99!Vax2;;chr14:18814020..18814023,+!p3@Thrb!1.30!18.99!Thrb;;chr19:19185697..19185711,-!p2@Rorb!1.29!23.36!Rorb;;chr2:146047829..146047847,+!p1@Insm1!1.26!30.89!Insm1;;chr4:150503457..150503498,-!p3@Camta1!1.26!19.14!Camta1;;chr17:25707623..25707639,-!p1@Sox8!1.25!71.43!Sox8;;chr3:99057269..99057306,+!p1@Tbx15!1.24!19.89!Tbx15;;chr4:114598669..114598674,-!p1@Foxe3!1.23!15.97!Foxe3;;chr4:21612929..21612952,-!p1@Prdm13!1.23!15.82!Prdm13;;chr2:105515586..105515606,+!p4@Pax6!1.23!15.82!Pax6;;chr13:117099847..117099907,-!p1@Isl1!1.21!27.88!Isl1;;chr10:42303385..42303401,-!p1@Nr2e1!1.21!15.37!Nr2e1;;chr17:86012772..86012825,+!p4@Six3!1.19!14.62!Six3;;chr1:136186574..136186592,+!p1@Myog!1.19!14.32!Myog;;chr1:19202352..19202354,+!p2@Tfap2b!1.18!14.17!Tfap2b;;chr10:20880698..20880717,-!p3@Myb!1.15!20.35!Myb;;chr10:20880731..20880775,-!p2@Myb!1.14!26.98!Myb;;chr10:129717308..129717319,-!p2@Neurod4!1.14!12.81!Neurod4;;chr9:55388997..55389016,+!p1@Isl2!1.14!12.66!Isl2;;chr12:28027561..28027591,-!p1@Sox11!1.12!79.87!Sox11;;chr13:40829137..40829205,-!p1@Tfap2a!1.12!13.86!Tfap2a;;chr13:83643159..83643226,+!p3@Mef2c!1.12!12.06!Mef2c;;chr5:114723781..114723795,-!p1@Foxn4!1.11!11.91!Foxn4;;chr2:163028808..163028869,+!p1@Tox2!1.10!41.29!Tox2;;chr4:97248607..97248649,+!p15@Nfia!1.10!11.45!Nfia;;chr12:34642510..34642530,+!p1@Twist1!1.09!35.72!Twist1;;chr3:128916868..128916890,+!p1@Pitx2!1.09!15.52!Pitx2;;chr16:91225808..91225824,+!p1@Olig2!1.09!11.30!Olig2;;chr13:40826150..40826167,-!p3@Tfap2a!1.08!12.36!Tfap2a;;chr2:151907546..151907561,+!p1@Scrt2!1.07!10.85!Scrt2;;chr8:12395603..12395621,+!p1@Sox1!1.07!10.70!Sox1;;chr10:12810631..12810649,+!p1@Plagl1!1.05!271.72!Plagl1;;chr11:101755669..101755686,-!p1@Meox1!1.05!18.54!Meox1;;chr16:25801993..25802014,+!p1@Trp63!1.05!10.25!Trp63;;chr17:86020137..86020149,+!p5@Six3!1.05!10.10!Six3;;chr14:49282415..49282426,-!p4@Otx2!1.05!10.10!Otx2;;chr2:105515793..105515808,+!p3@Pax6!1.03!9.80!Pax6;;chr2:105515635..105515661,+!p5@Pax6!1.03!9.80!Pax6;;chr14:34791937..34791977,-!p1@Zfp488!1.01!9.34!Zfp488;;chr10:44178521..44178557,-!p1@Prdm1!1.00!16.13!Prdm1;;chr10:20880629..20880683,-!p1@Myb!0.99!25.77!Myb;;chr10:126778916..126778974,-!p1@Gli1!0.98!19.59!Gli1;;chr9:91260594..91260612,-!p1@Zic1!0.98!8.59!Zic1;;chr5:106887474..106887489,-!p1@Barhl2!0.97!8.29!Barhl2;;chr18:64499706..64499721,+!p2@Onecut2!0.96!11.60!Onecut2;;chr9:31720843..31720888,-!p1@Barx2!0.96!9.04!Barx2;;chr11:21901608..21901634,-!p1@Otx1!0.96!8.14!Otx1;;chr1:189821714..189821761,+!p1@Esrrg!0.95!15.07!Esrrg;;chr15:103164702..103164778,-!p3@Zfp385a!0.95!9.34!Zfp385a;;chr9:91260616..91260653,-!p2@Zic1!0.95!7.99!Zic1;;chr14:49287107..49287125,-!p3@Otx2!0.95!7.84!Otx2;;chr14:122874619..122874634,+!p1@Zic2!0.95!7.84!Zic2;;chr1:19199151..19199170,+!p3@Tfap2b!0.95!7.84!Tfap2b;;chr7:6649134..6649167,-!p1@Zim1!0.94!42.80!Zim1;;chr15:35225845..35225867,+!p1@Osr2!0.94!20.19!Osr2;;chr15:76352832..76352900,-!p1@Scrt1!0.94!7.69!Scrt1;;chr13:40825465..40825469,-!p2@Tfap2a!0.94!7.69!Tfap2a;;chr10:42303452..42303470,-!p2@Nr2e1!0.93!7.54!Nr2e1;;chr6:70906450..70906454,+!p1@Foxi3!0.92!7.23!Foxi3;;chr7:38554763..38554780,-!p1@Zfp536!0.91!13.41!Zfp536;;chr4:124334894..124334899,+!p1@Pou3f1!0.91!9.49!Pou3f1;;chrX:58146612..58146615,-!p1@Sox3!0.91!7.08!Sox3;;chr3:95032091..95032183,-!p1@Mllt11!0.90!62.54!Mllt11;;chr18:55149735..55149776,-!p4@Zfp608!0.90!17.48!Zfp608;;chr9:96159147..96159204,+!p2@Tfdp2!0.90!13.26!Tfdp2;;chr1:140739014..140739032,-!p1@Lhx9!0.90!9.04!Lhx9;;chr2:71384802..71384815,-!p1@Dlx2!0.90!8.74!Dlx2;;chr18:66098673..66098684,-!p2@Rax!0.90!6.93!Rax;;chr13:99124189..99124205,+!p1@Foxd1!0.89!10.55!Foxd1;;chr10:44178375..44178390,-!p2@Prdm1!0.89!9.34!Prdm1;;chr9:118387300..118387317,+!p1@Eomes!0.89!6.78!Eomes;;chr13:72766250..72766273,+!p1@Irx2!0.88!10.40!Irx2;;chr4:148178559..148178603,+!p1@Casz1!0.87!19.44!Casz1;;chr2:120365588..120365602,-!p2@Zfp106!0.87!11.00!Zfp106;;chr1:9690398..9690410,-!p2@Mybl1!0.87!7.84!Mybl1;;chr7:53631837..53631850,+!p1@Myod1!0.87!6.48!Myod1;;chr10:102491405..102491416,-!p1@Alx1!0.87!6.48!Alx1;;chr10:42303410..42303422,-!p3@Nr2e1!0.87!6.33!Nr2e1;;chr1:6720216..6720232,+!p1@St18!0.87!6.33!St18;;chr2:65683890..65683907,+!p1@Csrnp3!0.86!12.36!Csrnp3;;chr1:179374784..179374800,+!p2@Zfp238!0.86!7.38!Zfp238;;chr10:106931775..106931798,-!p1@Myf6!0.86!6.18!Myf6;;chr17:86020468..86020504,+!p6@Six3!0.86!6.18!Six3;;chr4:97248473..97248496,+!p16@Nfia!0.85!6.03!Nfia;;chr4:13670499..13670526,+!p2@Runx1t1!0.84!13.71!Runx1t1;;chr1:19199119..19199134,+!p4@Tfap2b!0.84!5.88!Tfap2b;;chr1:19199095..19199114,+!p5@Tfap2b!0.84!5.88!Tfap2b;;chr19:7342725..7342784,+!p1@Rcor2!0.83!25.32!Rcor2;;chr7:116154364..116154444,+!p1@Tub!0.83!10.40!Tub;;chr4:97248652..97248671,+!p19@Nfia!0.83!5.73!Nfia;;chr11:121380640..121380655,-!p1@Zfp750!0.82!9.65!Zfp750;;chr10:67364011..67364018,-!p5@Zfp365!0.82!5.58!Zfp365;;chr5:114724042..114724090,-!p2@Foxn4!0.82!5.58!Foxn4;;chr14:98568971..98569025,-!p1@Dach1!0.81!44.91!Dach1;;chr4:150482563..150482655,-!p2@Camta1!0.81!20.65!Camta1;;chr11:85646263..85646278,+!p2@Tbx2!0.81!14.92!Tbx2;;chr4:135129538..135129558,-!p1@Grhl3!0.81!8.44!Grhl3;;chr15:76352677..76352737,-!p3@Scrt1!0.81!5.43!Scrt1;;chr2:181501988..181502026,+!p3@Myt1!0.81!5.43!Myt1;;chr7:17647736..17647772,-!p1@Hif3a!0.80!20.35!Hif3a;;chr13:72766279..72766296,+!p2@Irx2!0.80!8.14!Irx2;;chrX:55283799..55283813,+!p1@Zic3!0.80!5.27!Zic3;;chr19:46222859..46222876,-!p1@Pitx3!0.80!5.27!Pitx3;;chr12:74147689..74147711,-!p1@Six1!0.79!11.91!Six1;;chr8:24780125..24780143,+!p1@Zmat4!0.79!7.69!Zmat4;;chr11:98789140..98789168,+!p5@Rara!0.78!8.44!Rara;;chr7:144505957..144505972,-!p2@Ebf3!0.78!6.33!Ebf3;;chr9:24578720..24578735,-!p1@Tbx20!0.78!4.97!Tbx20;;chr1:19199079..19199092,+!p7@Tfap2b!0.78!4.97!Tfap2b;;chr2:65768174..65768247,+!p2@Csrnp3!0.78!4.97!Csrnp3;;chr10:106923133..106923146,-!p1@Myf5!0.78!4.97!Myf5;;chr4:13678723..13678739,+!p10@Runx1t1!0.78!4.97!Runx1t1;;chr7:144506077..144506128,-!p1@Ebf3!0.77!11.91!Ebf3;;chr1:165243591..165243625,-!p2@Prrx1!0.77!7.69!Prrx1;;chr19:7342786..7342803,+!p2@Rcor2!0.77!6.78!Rcor2;;chr17:48015645..48015689,-!p9@Foxp4!0.77!6.48!Foxp4;;chr2:151906844..151906873,+!p3@Scrt2!0.77!4.82!Scrt2;;chr2:172375081..172375105,+!p1@Tfap2c!0.77!4.82!Tfap2c;;chr3:34548946..34548972,+!p2@Sox2!0.76!5.27!Sox2;;chr9:106356211..106356242,+!p1@Pcbp4!0.75!99.92!Pcbp4;;chr14:98568761..98568814,-!p2@Dach1!0.75!35.11!Dach1;;chr4:6917921..6917970,-!p2@Tox!0.75!14.02!Tox;;chr4:148178529..148178548,+!p3@Casz1!0.75!11.60!Casz1;;chr10:44178493..44178520,-!p3@Prdm1!0.75!6.78!Prdm1;;chr1:169528720..169528749,+!p6@Rxrg!0.75!4.67!Rxrg;;chr1:19199221..19199234,+!p6@Tfap2b!0.75!4.67!Tfap2b;;chr18:66098752..66098757,-!p3@Rax!0.75!4.67!Rax;;chr4:109650609..109650653,+!p1@Dmrta2!0.75!4.67!Dmrta2;;chr11:85646303..85646329,+!p1@Tbx2!0.74!32.70!Tbx2;;chr7:38557752..38557793,-!p3@Zfp536!0.74!5.43!Zfp536;;chr17:86087592..86087615,-!p1@Six2!0.74!4.52!Six2;;chr17:86020186..86020195,+!p9@Six3!0.74!4.52!Six3;;chr10:44178474..44178487,-!p4@Prdm1!0.73!6.63!Prdm1;;chr8:107793737..107793757,+!p2@Hsf4!0.73!5.12!Hsf4;;chr2:81893535..81893548,+!p1@Zfp804a!0.73!4.37!Zfp804a;;chr13:83643232..83643254,+!p5@Mef2c!0.73!4.37!Mef2c;;chr10:102491237..102491291,-!p2@Alx1!0.73!4.37!Alx1;;chr12:12948633..12948651,-!p1@Mycn!0.71!44.91!Mycn;;chr9:87626083..87626108,-!p1@Tbx18!0.71!9.95!Tbx18;;chr1:93309740..93309811,-!p1@Hes6!0.70!90.88!Hes6;;chr8:94881733..94881790,+!p1@Irx5!0.70!8.44!Irx5;;chr18:64499674..64499696,+!p1@Onecut2!0.70!7.38!Onecut2;;chr2:103143336..103143367,-!p1@Ehf!0.70!6.93!Ehf;;chr1:19202185..19202187,+!p9@Tfap2b!0.70!4.07!Tfap2b;;chr3:128902837..128902861,+!p3@Pitx2!0.70!4.07!Pitx2;;chr3:99057256..99057268,+!p3@Tbx15!0.70!4.07!Tbx15;;chr11:44430989..44431015,+!p4@Ebf1!0.69!7.38!Ebf1;;chr2:17976799..17976829,+!p5@Mllt10!0.69!4.97!Mllt10;;chr9:98855868..98855895,+!p1@Foxl2!0.69!3.92!Foxl2;;chr12:30219426..30219506,+!p2@Myt1l!0.69!3.92!Myt1l;;chr3:66785857..66785873,-!p1@Shox2!0.69!3.92!Shox2;;chr9:106356243..106356264,+!p2@Pcbp4!0.68!18.39!Pcbp4;;chr18:65741935..65741964,+!p2@Zfp532!0.68!11.60!Zfp532;;chr12:3891753..3891801,+!p4@Dnmt3a!0.68!6.63!Dnmt3a;;chr15:103085660..103085681,-!p1@Nfe2!0.68!6.03!Nfe2;;chr13:55932591..55932622,-!p1@Pitx1!0.68!4.67!Pitx1;;chr11:94981424..94981439,+!p1@Dlx3!0.68!4.37!Dlx3;;chr14:18814147..18814153,+!p5@Thrb!0.68!3.77!Thrb;;chr15:76352740..76352781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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0003056,UBERON:0010316,FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 42: | ||
|has_quality= | |has_quality= | ||
|id=FF:1261-18D4 | |id=FF:1261-18D4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011521 | ||
|is_obsolete= | |||
|library_id=CNhs11023 | |||
|library_id_phase_based=2:CNhs11023 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1261 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1261 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/eyeball%252c%2520embryo%2520E17.CNhs11023.1261-18D4.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/eyeball%252c%2520embryo%2520E17.CNhs11023.1261-18D4.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/eyeball%252c%2520embryo%2520E17.CNhs11023.1261-18D4.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/eyeball%252c%2520embryo%2520E17.CNhs11023.1261-18D4.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/eyeball%252c%2520embryo%2520E17.CNhs11023.1261-18D4.mm9.nobarcode.rdna.fa.gz | |||
|name=eyeball, embryo E17 | |name=eyeball, embryo E17 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11023,LSID731,release008,COMPLETED | |profile_hcage=CNhs11023,LSID731,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.311481766842915,0.0393764359618596,0,0,0.0609639314262262,0,0.760804392198544,0,0.210804893560203,0,0,1.11759773863144,0,0,0,0,0,0,0.120904468810743,0,0,0,0,0,0,0,0.0226299361101485,0,0,0,0,0.0304819657131131,-0.0451289619427455,0,0,0,0,0.0677906979602745,0.14856373317233,0.02975092988899,0.0155753992119243,0.784574275357788,0.845954324040256,0,0,0,0,0,0,0,0,0,0,0,0,0.095995300596529,0.162000848159969,0,0,0,-0.0272906826576217,0,-0.031186383987817,0.0609639314262262,0.162000848159969,0.0832895508191975,0.204615947064055,0.00214716235393164,0.715828389072822,0.26414240227564,0,0.0364054171856423,0.0873266582453263,0,0,0,0.111082456903711,-0.0512507308967053,-0.103173002032267,0.0355824230976863,0,0,0,0,0.0304819657131131,0,-0.010766856254989,0.10675018403416,-0.0906401250556187,0.0480992304249528,0,0.0609639314262262,0,0 | |||
|rna_box=18 | |rna_box=18 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 76: | Line 96: | ||
|sample_tissue=eyeball | |sample_tissue=eyeball | ||
|top_motifs=CRX:3.39936909165;LHX3,4:2.50541279596;SOX{8,9,10}:2.24336656558;NKX2-1,4:2.20080021267;DBP:2.09108479518;POU1F1:2.03362666567;TAL1_TCF{3,4,12}:1.99244434004;NKX6-1,2:1.93802108329;HSF1,2:1.81677826059;FOXP1:1.64112023528;GATA4:1.61725351727;BPTF:1.53661737381;SOX2:1.5297492956;VSX1,2:1.50446744194;NKX3-2:1.49681901184;NKX2-3_NKX2-5:1.46292011339;POU6F1:1.41702566277;MZF1:1.41034672533;IKZF2:1.3997088841;PAX1,9:1.39078500159;PITX1..3:1.38120913751;GFI1:1.36165185968;NANOG:1.358214001;NKX3-1:1.35485650445;POU5F1:1.32957845425;KLF4:1.30564231884;PRDM1:1.3048180131;ZNF384:1.22440525761;EVI1:1.2187026924;PAX6:1.21862842459;AIRE:1.17809890131;GFI1B:1.16340790665;EN1,2:1.15405462277;ONECUT1,2:1.15235746857;TBP:1.1389102308;HMX1:1.13393860324;TOPORS:1.12523914678;HOX{A4,D4}:1.1119776676;LEF1_TCF7_TCF7L1,2:1.08891849141;FOXL1:1.08881242516;SOX5:1.08260448964;TGIF1:1.0770610229;OCT4_SOX2{dimer}:1.07487151713;MYBL2:1.04084076749;MAZ:1.02079564354;PAX4:1.01220163825;PATZ1:0.995437393894;RREB1:0.980366889735;GTF2I:0.976846092306;RORA:0.948358988346;POU3F1..4:0.947109534317;NKX2-2,8:0.919584997989;UFEwm:0.919282170128;SOX17:0.90372486667;BREu{core}:0.863111056111;HOX{A5,B5}:0.854431656152;FOXD3:0.84858557442;ATF2:0.792088788233;CUX2:0.754249561567;NFY{A,B,C}:0.713087983288;ZNF143:0.710700197036;NR3C1:0.700258887435;AHR_ARNT_ARNT2:0.698133921007;MED-1{core}:0.69806089366;ADNP_IRX_SIX_ZHX:0.696130005246;HAND1,2:0.687057833429;NANOG{mouse}:0.683584797496;ZBTB16:0.666098265156;CDC5L:0.654647293622;EP300:0.651589656943;MAFB:0.646368810879;NHLH1,2:0.646191468295;CDX1,2,4:0.612988983666;MYOD1:0.606658776713;E2F1..5:0.589885564975;TFDP1:0.585860552949;NRF1:0.543263429504;ZIC1..3:0.537446755348;HMGA1,2:0.518126492104;IKZF1:0.517992552121;GTF2A1,2:0.508916014042;MTE{core}:0.506405491779;FOXP3:0.498655301351;ZFP161:0.494222630486;RBPJ:0.492866689479;GCM1,2:0.483058055557;ARID5B:0.438804006528;RXR{A,B,G}:0.415473778571;TFAP2B:0.382788849391;PAX5:0.381584116488;NFIX:0.375792527332;MYFfamily:0.363637826599;HIC1:0.349687068354;NFATC1..3:0.344491791647;RFX1:0.335266066888;SP1:0.327618132554;ZNF238:0.281989748966;TFAP4:0.279043638624;EGR1..3:0.261571857147;CEBPA,B_DDIT3:0.251107037649;SMAD1..7,9:0.248817880077;PAX8:0.246452023004;MEF2{A,B,C,D}:0.241737010205;PRRX1,2:0.238381007875;TEAD1:0.224652029672;REST:0.220275886285;TLX2:0.200308501276;T:0.198925521407;XCPE1{core}:0.180705931006;FOX{I1,J2}:0.167176640986;FOXA2:0.158794516269;STAT5{A,B}:0.111010907343;TFCP2:0.105381500462;ZNF423:0.0906640541002;GLI1..3:0.0497095900661;HIF1A:0.0471167433019;HOXA9_MEIS1:0.00094188942527;RFX2..5_RFXANK_RFXAP:-0.0120510412825;LMO2:-0.0244028730285;ZBTB6:-0.0320040844051;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0403385516646;TFAP2{A,C}:-0.0410153564239;FOXN1:-0.0520118421565;POU2F1..3:-0.0550066840764;TBX4,5:-0.0566133967114;GATA6:-0.0662621074754;PAX2:-0.0819046742089;TEF:-0.0929177682388;ESR1:-0.0936727204226;HBP1_HMGB_SSRP1_UBTF:-0.0980520287637;ZNF148:-0.0983852512247;FOX{F1,F2,J1}:-0.119075464242;ALX1:-0.120336066513;NFIL3:-0.126975675087;HES1:-0.127774021991;SRF:-0.144502313493;PBX1:-0.159872501669;TLX1..3_NFIC{dimer}:-0.162971769458;NFE2:-0.184071255529;MYB:-0.194943178122;FOXO1,3,4:-0.196778296212;SNAI1..3:-0.199940738831;MTF1:-0.202489756014;JUN:-0.218330055447;FOXM1:-0.229045199274;ELK1,4_GABP{A,B1}:-0.274016597097;HNF1A:-0.289519880399;IRF7:-0.289534940037;FOS_FOS{B,L1}_JUN{B,D}:-0.331154435529;CREB1:-0.336164050805;RXRA_VDR{dimer}:-0.379559393726;FOXQ1:-0.423080266108;TP53:-0.447289760329;HNF4A_NR2F1,2:-0.458197588815;FOX{D1,D2}:-0.458242599459;FOSL2:-0.461800075703;NFE2L2:-0.465974308304;BACH2:-0.475072468746;ATF6:-0.486368377229;PDX1:-0.490695423232;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.497053333195;YY1:-0.518755223762;ATF4:-0.525878391858;GZF1:-0.536760168459;ALX4:-0.546594161964;ATF5_CREB3:-0.561916470647;IRF1,2:-0.626391532858;SREBF1,2:-0.630683728911;STAT2,4,6:-0.633686077506;SPIB:-0.66011228443;SPZ1:-0.673989527129;SPI1:-0.709911639524;STAT1,3:-0.721048910342;EBF1:-0.746295102639;ZEB1:-0.761538743749;ELF1,2,4:-0.848654382349;NR5A1,2:-0.859424313721;RUNX1..3:-0.908415281324;NFKB1_REL_RELA:-0.93281479386;ESRRA:-0.977450383776;HLF:-0.993443460694;DMAP1_NCOR{1,2}_SMARC:-1.01039405087;NFE2L1:-1.05391102243;PPARG:-1.10661617234;ETS1,2:-1.14820986698;AR:-1.16928017265;bHLH_family:-1.16961142404;NR1H4:-1.27648752475;NR6A1:-1.56195414942 | |top_motifs=CRX:3.39936909165;LHX3,4:2.50541279596;SOX{8,9,10}:2.24336656558;NKX2-1,4:2.20080021267;DBP:2.09108479518;POU1F1:2.03362666567;TAL1_TCF{3,4,12}:1.99244434004;NKX6-1,2:1.93802108329;HSF1,2:1.81677826059;FOXP1:1.64112023528;GATA4:1.61725351727;BPTF:1.53661737381;SOX2:1.5297492956;VSX1,2:1.50446744194;NKX3-2:1.49681901184;NKX2-3_NKX2-5:1.46292011339;POU6F1:1.41702566277;MZF1:1.41034672533;IKZF2:1.3997088841;PAX1,9:1.39078500159;PITX1..3:1.38120913751;GFI1:1.36165185968;NANOG:1.358214001;NKX3-1:1.35485650445;POU5F1:1.32957845425;KLF4:1.30564231884;PRDM1:1.3048180131;ZNF384:1.22440525761;EVI1:1.2187026924;PAX6:1.21862842459;AIRE:1.17809890131;GFI1B:1.16340790665;EN1,2:1.15405462277;ONECUT1,2:1.15235746857;TBP:1.1389102308;HMX1:1.13393860324;TOPORS:1.12523914678;HOX{A4,D4}:1.1119776676;LEF1_TCF7_TCF7L1,2:1.08891849141;FOXL1:1.08881242516;SOX5:1.08260448964;TGIF1:1.0770610229;OCT4_SOX2{dimer}:1.07487151713;MYBL2:1.04084076749;MAZ:1.02079564354;PAX4:1.01220163825;PATZ1:0.995437393894;RREB1:0.980366889735;GTF2I:0.976846092306;RORA:0.948358988346;POU3F1..4:0.947109534317;NKX2-2,8:0.919584997989;UFEwm:0.919282170128;SOX17:0.90372486667;BREu{core}:0.863111056111;HOX{A5,B5}:0.854431656152;FOXD3:0.84858557442;ATF2:0.792088788233;CUX2:0.754249561567;NFY{A,B,C}:0.713087983288;ZNF143:0.710700197036;NR3C1:0.700258887435;AHR_ARNT_ARNT2:0.698133921007;MED-1{core}:0.69806089366;ADNP_IRX_SIX_ZHX:0.696130005246;HAND1,2:0.687057833429;NANOG{mouse}:0.683584797496;ZBTB16:0.666098265156;CDC5L:0.654647293622;EP300:0.651589656943;MAFB:0.646368810879;NHLH1,2:0.646191468295;CDX1,2,4:0.612988983666;MYOD1:0.606658776713;E2F1..5:0.589885564975;TFDP1:0.585860552949;NRF1:0.543263429504;ZIC1..3:0.537446755348;HMGA1,2:0.518126492104;IKZF1:0.517992552121;GTF2A1,2:0.508916014042;MTE{core}:0.506405491779;FOXP3:0.498655301351;ZFP161:0.494222630486;RBPJ:0.492866689479;GCM1,2:0.483058055557;ARID5B:0.438804006528;RXR{A,B,G}:0.415473778571;TFAP2B:0.382788849391;PAX5:0.381584116488;NFIX:0.375792527332;MYFfamily:0.363637826599;HIC1:0.349687068354;NFATC1..3:0.344491791647;RFX1:0.335266066888;SP1:0.327618132554;ZNF238:0.281989748966;TFAP4:0.279043638624;EGR1..3:0.261571857147;CEBPA,B_DDIT3:0.251107037649;SMAD1..7,9:0.248817880077;PAX8:0.246452023004;MEF2{A,B,C,D}:0.241737010205;PRRX1,2:0.238381007875;TEAD1:0.224652029672;REST:0.220275886285;TLX2:0.200308501276;T:0.198925521407;XCPE1{core}:0.180705931006;FOX{I1,J2}:0.167176640986;FOXA2:0.158794516269;STAT5{A,B}:0.111010907343;TFCP2:0.105381500462;ZNF423:0.0906640541002;GLI1..3:0.0497095900661;HIF1A:0.0471167433019;HOXA9_MEIS1:0.00094188942527;RFX2..5_RFXANK_RFXAP:-0.0120510412825;LMO2:-0.0244028730285;ZBTB6:-0.0320040844051;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0403385516646;TFAP2{A,C}:-0.0410153564239;FOXN1:-0.0520118421565;POU2F1..3:-0.0550066840764;TBX4,5:-0.0566133967114;GATA6:-0.0662621074754;PAX2:-0.0819046742089;TEF:-0.0929177682388;ESR1:-0.0936727204226;HBP1_HMGB_SSRP1_UBTF:-0.0980520287637;ZNF148:-0.0983852512247;FOX{F1,F2,J1}:-0.119075464242;ALX1:-0.120336066513;NFIL3:-0.126975675087;HES1:-0.127774021991;SRF:-0.144502313493;PBX1:-0.159872501669;TLX1..3_NFIC{dimer}:-0.162971769458;NFE2:-0.184071255529;MYB:-0.194943178122;FOXO1,3,4:-0.196778296212;SNAI1..3:-0.199940738831;MTF1:-0.202489756014;JUN:-0.218330055447;FOXM1:-0.229045199274;ELK1,4_GABP{A,B1}:-0.274016597097;HNF1A:-0.289519880399;IRF7:-0.289534940037;FOS_FOS{B,L1}_JUN{B,D}:-0.331154435529;CREB1:-0.336164050805;RXRA_VDR{dimer}:-0.379559393726;FOXQ1:-0.423080266108;TP53:-0.447289760329;HNF4A_NR2F1,2:-0.458197588815;FOX{D1,D2}:-0.458242599459;FOSL2:-0.461800075703;NFE2L2:-0.465974308304;BACH2:-0.475072468746;ATF6:-0.486368377229;PDX1:-0.490695423232;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.497053333195;YY1:-0.518755223762;ATF4:-0.525878391858;GZF1:-0.536760168459;ALX4:-0.546594161964;ATF5_CREB3:-0.561916470647;IRF1,2:-0.626391532858;SREBF1,2:-0.630683728911;STAT2,4,6:-0.633686077506;SPIB:-0.66011228443;SPZ1:-0.673989527129;SPI1:-0.709911639524;STAT1,3:-0.721048910342;EBF1:-0.746295102639;ZEB1:-0.761538743749;ELF1,2,4:-0.848654382349;NR5A1,2:-0.859424313721;RUNX1..3:-0.908415281324;NFKB1_REL_RELA:-0.93281479386;ESRRA:-0.977450383776;HLF:-0.993443460694;DMAP1_NCOR{1,2}_SMARC:-1.01039405087;NFE2L1:-1.05391102243;PPARG:-1.10661617234;ETS1,2:-1.14820986698;AR:-1.16928017265;bHLH_family:-1.16961142404;NR1H4:-1.27648752475;NR6A1:-1.56195414942 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1261-18D4;search_select_hide=table117:1261-18D4 | |||
}} | }} | ||
Latest revision as of 18:40, 4 June 2020
| Name: | eyeball, embryo E17 |
|---|---|
| Species: | Mouse (Mus musculus) |
| Library ID: | CNhs11023 |
| Sample type: | developmental |
| Genomic View: | UCSC |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11023
| 0 | 0 |
| 1 | 0.117 |
| 10 | 0 |
| 100 | 0.162 |
| 1000 | 0 |
| 1001 | 0.102 |
| 1002 | 0.507 |
| 1003 | 0.0707 |
| 1004 | 0.358 |
| 1005 | -0.0579 |
| 1006 | 0.0936 |
| 1007 | 0.122 |
| 1008 | 0 |
| 1009 | 0.0572 |
| 101 | 0.0531 |
| 1010 | 0 |
| 1011 | 0.0105 |
| 1012 | 0.162 |
| 1013 | -0.182 |
| 1014 | 0.635 |
| 1015 | 0.214 |
| 1016 | 0.24 |
| 1017 | 0 |
| 1018 | 0.205 |
| 1019 | 0 |
| 102 | 0 |
| 1020 | 0 |
| 1021 | 0 |
| 1022 | -0.00943 |
| 1023 | 0 |
| 1024 | -0.0251 |
| 1025 | 0.00122 |
| 1026 | 0 |
| 1027 | 0.462 |
| 1028 | 0 |
| 1029 | 0.411 |
| 103 | 0.435 |
| 1030 | 0 |
| 1031 | 0.265 |
| 1032 | -0.0145 |
| 1033 | 0.061 |
| 1034 | 0 |
| 1035 | 0.061 |
| 1036 | 0.107 |
| 1037 | 0 |
| 1038 | 0.00183 |
| 1039 | -0.0828 |
| 104 | 0 |
| 1040 | 0.0755 |
| 1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11023
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11023
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.192 |
| 10 | 10 | 0.236 |
| 100 | 100 | 0.759 |
| 101 | 101 | 0.971 |
| 102 | 102 | 0.39 |
| 103 | 103 | 0.0445 |
| 104 | 104 | 0.51 |
| 105 | 105 | 0.418 |
| 106 | 106 | 0.0387 |
| 107 | 107 | 0.503 |
| 108 | 108 | 0.869 |
| 109 | 109 | 0.0122 |
| 11 | 11 | 0.0293 |
| 110 | 110 | 0.133 |
| 111 | 111 | 0.00218 |
| 112 | 112 | 0.00348 |
| 113 | 113 | 0.924 |
| 114 | 114 | 0.0289 |
| 115 | 115 | 0.807 |
| 116 | 116 | 0.342 |
| 117 | 117 | 0.0166 |
| 118 | 118 | 0.41 |
| 119 | 119 | 0.178 |
| 12 | 12 | 0.517 |
| 120 | 120 | 0.516 |
| 121 | 121 | 0.126 |
| 122 | 122 | 0.789 |
| 123 | 123 | 0.965 |
| 124 | 124 | 0.978 |
| 125 | 125 | 0.0215 |
| 126 | 126 | 0.166 |
| 127 | 127 | 0.196 |
| 128 | 128 | 0.352 |
| 129 | 129 | 0.428 |
| 13 | 13 | 0.00295 |
| 130 | 130 | 0.922 |
| 131 | 131 | 0.559 |
| 132 | 132 | 0.509 |
| 133 | 133 | 0.877 |
| 134 | 134 | 0.424 |
| 135 | 135 | 0.43 |
| 136 | 136 | 0.00452 |
| 137 | 137 | 0.886 |
| 138 | 138 | 0.407 |
| 139 | 139 | 0.0524 |
| 14 | 14 | 0.868 |
| 140 | 140 | 0.774 |
| 141 | 141 | 0.132 |
| 142 | 142 | 0.713 |
| 143 | 143 | 0.48 |
| 144 | 144 | 0.446 |
| 145 | 145 | 0.112 |
| 146 | 146 | 0.285 |
| 147 | 147 | 0.502 |
| 148 | 148 | 0.276 |
| 149 | 149 | 0.156 |
| 15 | 15 | 0.0248 |
| 150 | 150 | 0.238 |
| 151 | 151 | 0.246 |
| 152 | 152 | 0.0145 |
| 153 | 153 | 0.926 |
| 154 | 154 | 0.911 |
| 155 | 155 | 0.24 |
| 156 | 156 | 0.226 |
| 157 | 157 | 0.899 |
| 158 | 158 | 0.19 |
| 159 | 159 | 0.628 |
| 160 | 160 | 0.923 |
| 161 | 161 | 0.173 |
| 162 | 162 | 0.891 |
| 163 | 163 | 0.101 |
| 164 | 164 | 0.00563 |
| 165 | 165 | 0.0213 |
| 166 | 166 | 0.449 |
| 167 | 167 | 0.61 |
| 168 | 168 | 0.415 |
| 169 | 169 | 0.00324 |
| 17 | 17 | 0.0551 |
| 18 | 18 | 0.761 |
| 19 | 19 | 0.422 |
| 2 | 2 | 0.449 |
| 20 | 20 | 0.363 |
| 21 | 21 | 0.433 |
| 22 | 22 | 0.248 |
| 23 | 23 | 0.53 |
| 24 | 24 | 0.0419 |
| 25 | 25 | 0.392 |
| 26 | 26 | 0.131 |
| 27 | 27 | 0.464 |
| 28 | 28 | 0.263 |
| 29 | 29 | 0.0347 |
| 3 | 3 | 0.112 |
| 30 | 30 | 0.85 |
| 31 | 31 | 0.769 |
| 32 | 32 | 0.681 |
| 33 | 33 | 0.0786 |
| 34 | 34 | 0.597 |
| 35 | 35 | 0.771 |
| 36 | 36 | 0.112 |
| 37 | 37 | 0.02 |
| 38 | 38 | 0.132 |
| 39 | 39 | 0.478 |
| 4 | 4 | 0.547 |
| 40 | 40 | 0.0395 |
| 41 | 41 | 0.106 |
| 42 | 42 | 0.451 |
| 43 | 43 | 0.196 |
| 44 | 44 | 0.198 |
| 45 | 45 | 0.275 |
| 46 | 46 | 0.32 |
| 47 | 47 | 0.146 |
| 48 | 48 | 0.0566 |
| 49 | 49 | 0.204 |
| 5 | 5 | 0.173 |
| 50 | 50 | 0.983 |
| 51 | 51 | 0.555 |
| 52 | 52 | 0.337 |
| 53 | 53 | 0.91 |
| 54 | 54 | 0.668 |
| 55 | 55 | 0.511 |
| 56 | 56 | 0.378 |
| 57 | 57 | 0.848 |
| 58 | 58 | 0.244 |
| 59 | 59 | 0.0375 |
| 6 | 6 | 0.739 |
| 60 | 60 | 0.0414 |
| 61 | 61 | 0.561 |
| 62 | 62 | 0.141 |
| 63 | 63 | 0.117 |
| 64 | 64 | 0.536 |
| 65 | 65 | 0.0882 |
| 66 | 66 | 0.973 |
| 67 | 67 | 0.428 |
| 68 | 68 | 0.099 |
| 69 | 69 | 0.886 |
| 7 | 7 | 0.16 |
| 70 | 70 | 0.012 |
| 71 | 71 | 0.0579 |
| 72 | 72 | 0.148 |
| 73 | 73 | 0.00331 |
| 74 | 74 | 0.955 |
| 75 | 75 | 0.0223 |
| 76 | 76 | 0.393 |
| 77 | 77 | 0.125 |
| 78 | 78 | 0.0943 |
| 79 | 79 | 0.345 |
| 8 | 8 | 0.101 |
| 80 | 80 | 0.162 |
| 81 | 81 | 0.418 |
| 82 | 82 | 0.0197 |
| 83 | 83 | 0.726 |
| 84 | 84 | 0.494 |
| 85 | 85 | 0.0608 |
| 86 | 86 | 0.154 |
| 87 | 87 | 3.97623e-4 |
| 88 | 88 | 0.79 |
| 89 | 89 | 0.15 |
| 9 | 9 | 0.452 |
| 90 | 90 | 0.345 |
| 91 | 91 | 0.73 |
| 92 | 92 | 0.209 |
| 93 | 93 | 0.25 |
| 94 | 94 | 0.703 |
| 95 | 95 | 0.0107 |
| 96 | 96 | 0.75 |
| 97 | 97 | 0.55 |
| 98 | 98 | 0.259 |
| 99 | 99 | 0.853 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11023
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0004456 (entire sense organ system)
0001456 (face)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011521 (mouse eyeball- embryo E17 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)
