FF:12582-133I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005351 | |||
|accession_numbers=CAGE;DRX008907;DRR009781;DRZ001206;DRZ002589;DRZ012556;DRZ013939 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | ||
Line 7: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor=biol_rep3 | |||
|expression_enrichment_score=chr15:102828658..102828678,+!p1@Hoxc6!1.83!66.43!Hoxc6;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.81!80.91!Zbtb11;;chr19:5447886..5447905,+!p1@Fosl1!1.74!54.06!Fosl1;;chr2:30700881..30700916,+!p1@Prrx2!1.65!79.85!Prrx2;;chr6:52190467..52190500,-!p1@Hoxa10!1.59!37.81!Hoxa10;;chr12:74147689..74147711,-!p1@Six1!1.58!78.79!Six1;;chr2:30700857..30700873,+!p3@Prrx2!1.51!42.40!Prrx2;;chr16:14705925..14705951,+!p1@Snai2!1.47!194.34!Snai2;;chr3:99057269..99057306,+!p1@Tbx15!1.44!32.15!Tbx15;;chr19:5447692..5447711,+!p2@Fosl1!1.42!25.09!Fosl1;;chr15:102797288..102797302,+!p1@Hoxc10!1.42!25.09!Hoxc10;;chr15:102751603..102751630,+!p1@Hoxc13!1.39!23.32!Hoxc13;;chr16:14705961..14705978,+!p2@Snai2!1.38!104.24!Snai2;;chr6:83661226..83661282,+!p1@Vax2!1.37!22.26!Vax2;;chr13:99124189..99124205,+!p1@Foxd1!1.36!32.86!Foxd1;;chr17:44951553..44951586,-!p2@Runx2!1.35!23.67!Runx2;;chr6:52176164..52176195,-!p1@Hoxa9!1.32!24.73!Hoxa9;;chr15:102797225..102797243,+!p2@Hoxc10!1.30!18.73!Hoxc10;;chr6:6831950..6831985,-!p2@Dlx5!1.29!20.49!Dlx5;;chr13:55932591..55932622,-!p1@Pitx1!1.23!19.08!Pitx1;;chr13:31898637..31898653,+!p2@Foxc1!1.20!26.15!Foxc1;;chr15:102751578..102751600,+!p2@Hoxc13!1.20!14.84!Hoxc13;;chr13:31898496..31898519,+!p3@Foxc1!1.18!22.97!Foxc1;;chr2:152758901..152758925,-!p1@Foxs1!1.17!60.42!Foxs1;;chr13:31898729..31898761,+!p1@Foxc1!1.14!31.09!Foxc1;;chr6:6831986..6832007,-!p4@Dlx5!1.14!12.72!Dlx5;;chr13:72766250..72766273,+!p1@Irx2!1.09!17.67!Irx2;;chr12:34642682..34642753,+!p2@Twist1!1.06!28.27!Twist1;;chr8:94881733..94881790,+!p1@Irx5!1.04!19.79!Irx5;;chr9:87625971..87625992,-!p2@Tbx18!1.04!9.89!Tbx18;;chr15:102828642..102828653,+!p2@Hoxc6!1.04!9.89!Hoxc6;;chr10:67375368..67375433,-!p1@Zfp365!1.02!16.96!Zfp365;;chr6:6832076..6832092,-!p1@Dlx5!1.01!10.95!Dlx5;;chr15:102751552..102751563,+!p3@Hoxc13!1.01!9.19!Hoxc13;;chr7:52071956..52071978,-!p1@Atf5!0.99!289.74!Atf5;;chr15:97738692..97738747,-!p1@Vdr!0.99!49.47!Vdr;;chr15:102797170..102797182,+!p3@Hoxc10!0.99!8.83!Hoxc10;;chr1:165243792..165243808,-!p1@Prrx1!0.95!28.27!Prrx1;;chr2:30700788..30700824,+!p2@Prrx2!0.95!12.37!Prrx2;;chr3:66785201..66785226,-!p3@Shox2!0.93!7.42!Shox2;;chr1:140739014..140739032,-!p1@Lhx9!0.92!9.54!Lhx9;;chr11:96153767..96153822,+!p1@Hoxb6!0.91!11.31!Hoxb6;;chr13:55932624..55932641,-!p2@Pitx1!0.89!6.71!Pitx1;;chr12:86940338..86940357,+!p1@Jdp2!0.88!68.55!Jdp2;;chr16:14705746..14705761,+!p4@Snai2!0.87!6.36!Snai2;;chr19:5423800..5423821,-!p5@Drap1!0.86!9.54!Drap1;;chr13:31898529..31898542,+!p5@Foxc1!0.85!7.42!Foxc1;;chr9:87626083..87626108,-!p1@Tbx18!0.84!13.78!Tbx18;;chr6:52163319..52163342,-!p1@Hoxa3!0.84!8.83!Hoxa3;;chr6:72185232..72185272,-!p1@Atoh8!0.83!17.67!Atoh8;;chr8:94325321..94325366,-!p1@Irx3!0.83!14.84!Irx3;;chr1:165243272..165243283,-!p6@Prrx1!0.83!7.07!Prrx1;;chr10:67000609..67000625,+!p1@Egr2!0.82!13.78!Egr2;;chr3:99057256..99057268,+!p3@Tbx15!0.82!5.65!Tbx15;;chr15:102839948..102839975,+!p3@Hoxc6!0.82!5.65!Hoxc6;;chr2:167363692..167363710,+!p1@Snai1!0.81!71.73!Snai1;;chr15:102797183..102797205,+!p4@Hoxc10!0.80!5.30!Hoxc10;;chr16:14705668..14705683,+!p3@Snai2!0.80!5.30!Snai2;;chr1:165243591..165243625,-!p2@Prrx1!0.79!8.13!Prrx1;;chr8:123640063..123640077,+!p1@Foxc2!0.78!9.54!Foxc2;;chr3:66785857..66785873,-!p1@Shox2!0.77!4.95!Shox2;;chr17:34784073..34784118,+!p2@Atf6b!0.75!20.49!Atf6b;;chr3:66785181..66785199,-!p2@Shox2!0.75!4.59!Shox2;;chr6:52190668..52190682,-!p3@Hoxa10!0.75!4.59!Hoxa10;;chr1:186556410..186556424,-!p1@Hlx!0.74!15.19!Hlx;;chr15:102087737..102087801,-!p3@Rarg!0.74!7.77!Rarg;;chr6:72185210..72185228,-!p3@Atoh8!0.73!7.77!Atoh8;;chr13:72101178..72101203,-!p1@Irx1!0.73!7.07!Irx1;;chr1:186556375..186556404,-!p3@Hlx!0.72!8.13!Hlx;;chr8:94881872..94881887,+!p2@Irx5!0.72!4.59!Irx5;;chr4:134676555..134676575,+!p2@Runx3!0.72!4.24!Runx3;;chr19:59534008..59534046,+!p7@Emx2!0.72!4.24!Emx2;;chr19:5424822..5424845,-!p3@Drap1!0.71!18.02!Drap1;;chr13:31717548..31717596,+!p1@Foxf2!0.71!8.83!Foxf2;;chr12:9581262..9581282,+!p1@Osr1!0.69!53.00!Osr1;;chr19:28754692..28754757,-!p1@Glis3!0.69!18.02!Glis3;;chr19:55816546..55816556,+!p3@Tcf7l2!0.69!16.61!Tcf7l2;;chr10:67375342..67375365,-!p3@Zfp365!0.69!3.89!Zfp365;;chr2:71367871..71367898,+!p1@Dlx1!0.69!3.89!Dlx1;;chr6:52176144..52176161,-!p2@Hoxa9!0.69!3.89!Hoxa9;;chr7:35904304..35904320,+!p1@Cebpa!0.68!88.69!Cebpa;;chr3:5218629..5218684,+!p1@Zfhx4!0.68!13.78!Zfhx4;;chr13:72766279..72766296,+!p2@Irx2!0.68!6.01!Irx2;;chr1:165243653..165243664,-!p4@Prrx1!0.68!5.65!Prrx1;;chr15:102076870..102076941,-!p1@Rarg!0.67!46.29!Rarg;;chr11:94981424..94981439,+!p1@Dlx3!0.67!4.24!Dlx3;;chr10:80889867..80889924,-!p1@Nfic!0.66!116.60!Nfic;;chr12:34642510..34642530,+!p1@Twist1!0.66!12.72!Twist1;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!0.66!5.30!Carhsp1;;chr15:102820964..102821006,+!p1@Hoxc8!0.66!3.53!Hoxc8;;chr12:120085700..120085711,+!p1@Sp8!0.66!3.53!Sp8;;chr15:102820946..102820961,+!p3@Hoxc8!0.66!3.53!Hoxc8;;chr19:5424768..5424811,-!p2@Drap1!0.65!77.38!Drap1;;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| |expression_enrichment_score=chr15:102828658..102828678,+!p1@Hoxc6!1.83!66.43!Hoxc6;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.81!80.91!Zbtb11;;chr19:5447886..5447905,+!p1@Fosl1!1.74!54.06!Fosl1;;chr2:30700881..30700916,+!p1@Prrx2!1.65!79.85!Prrx2;;chr6:52190467..52190500,-!p1@Hoxa10!1.59!37.81!Hoxa10;;chr12:74147689..74147711,-!p1@Six1!1.58!78.79!Six1;;chr2:30700857..30700873,+!p3@Prrx2!1.51!42.40!Prrx2;;chr16:14705925..14705951,+!p1@Snai2!1.47!194.34!Snai2;;chr3:99057269..99057306,+!p1@Tbx15!1.44!32.15!Tbx15;;chr19:5447692..5447711,+!p2@Fosl1!1.42!25.09!Fosl1;;chr15:102797288..102797302,+!p1@Hoxc10!1.42!25.09!Hoxc10;;chr15:102751603..102751630,+!p1@Hoxc13!1.39!23.32!Hoxc13;;chr16:14705961..14705978,+!p2@Snai2!1.38!104.24!Snai2;;chr6:83661226..83661282,+!p1@Vax2!1.37!22.26!Vax2;;chr13:99124189..99124205,+!p1@Foxd1!1.36!32.86!Foxd1;;chr17:44951553..44951586,-!p2@Runx2!1.35!23.67!Runx2;;chr6:52176164..52176195,-!p1@Hoxa9!1.32!24.73!Hoxa9;;chr15:102797225..102797243,+!p2@Hoxc10!1.30!18.73!Hoxc10;;chr6:6831950..6831985,-!p2@Dlx5!1.29!20.49!Dlx5;;chr13:55932591..55932622,-!p1@Pitx1!1.23!19.08!Pitx1;;chr13:31898637..31898653,+!p2@Foxc1!1.20!26.15!Foxc1;;chr15:102751578..102751600,+!p2@Hoxc13!1.20!14.84!Hoxc13;;chr13:31898496..31898519,+!p3@Foxc1!1.18!22.97!Foxc1;;chr2:152758901..152758925,-!p1@Foxs1!1.17!60.42!Foxs1;;chr13:31898729..31898761,+!p1@Foxc1!1.14!31.09!Foxc1;;chr6:6831986..6832007,-!p4@Dlx5!1.14!12.72!Dlx5;;chr13:72766250..72766273,+!p1@Irx2!1.09!17.67!Irx2;;chr12:34642682..34642753,+!p2@Twist1!1.06!28.27!Twist1;;chr8:94881733..94881790,+!p1@Irx5!1.04!19.79!Irx5;;chr9:87625971..87625992,-!p2@Tbx18!1.04!9.89!Tbx18;;chr15:102828642..102828653,+!p2@Hoxc6!1.04!9.89!Hoxc6;;chr10:67375368..67375433,-!p1@Zfp365!1.02!16.96!Zfp365;;chr6:6832076..6832092,-!p1@Dlx5!1.01!10.95!Dlx5;;chr15:102751552..102751563,+!p3@Hoxc13!1.01!9.19!Hoxc13;;chr7:52071956..52071978,-!p1@Atf5!0.99!289.74!Atf5;;chr15:97738692..97738747,-!p1@Vdr!0.99!49.47!Vdr;;chr15:102797170..102797182,+!p3@Hoxc10!0.99!8.83!Hoxc10;;chr1:165243792..165243808,-!p1@Prrx1!0.95!28.27!Prrx1;;chr2:30700788..30700824,+!p2@Prrx2!0.95!12.37!Prrx2;;chr3:66785201..66785226,-!p3@Shox2!0.93!7.42!Shox2;;chr1:140739014..140739032,-!p1@Lhx9!0.92!9.54!Lhx9;;chr11:96153767..96153822,+!p1@Hoxb6!0.91!11.31!Hoxb6;;chr13:55932624..55932641,-!p2@Pitx1!0.89!6.71!Pitx1;;chr12:86940338..86940357,+!p1@Jdp2!0.88!68.55!Jdp2;;chr16:14705746..14705761,+!p4@Snai2!0.87!6.36!Snai2;;chr19:5423800..5423821,-!p5@Drap1!0.86!9.54!Drap1;;chr13:31898529..31898542,+!p5@Foxc1!0.85!7.42!Foxc1;;chr9:87626083..87626108,-!p1@Tbx18!0.84!13.78!Tbx18;;chr6:52163319..52163342,-!p1@Hoxa3!0.84!8.83!Hoxa3;;chr6:72185232..72185272,-!p1@Atoh8!0.83!17.67!Atoh8;;chr8:94325321..94325366,-!p1@Irx3!0.83!14.84!Irx3;;chr1:165243272..165243283,-!p6@Prrx1!0.83!7.07!Prrx1;;chr10:67000609..67000625,+!p1@Egr2!0.82!13.78!Egr2;;chr3:99057256..99057268,+!p3@Tbx15!0.82!5.65!Tbx15;;chr15:102839948..102839975,+!p3@Hoxc6!0.82!5.65!Hoxc6;;chr2:167363692..167363710,+!p1@Snai1!0.81!71.73!Snai1;;chr15:102797183..102797205,+!p4@Hoxc10!0.80!5.30!Hoxc10;;chr16:14705668..14705683,+!p3@Snai2!0.80!5.30!Snai2;;chr1:165243591..165243625,-!p2@Prrx1!0.79!8.13!Prrx1;;chr8:123640063..123640077,+!p1@Foxc2!0.78!9.54!Foxc2;;chr3:66785857..66785873,-!p1@Shox2!0.77!4.95!Shox2;;chr17:34784073..34784118,+!p2@Atf6b!0.75!20.49!Atf6b;;chr3:66785181..66785199,-!p2@Shox2!0.75!4.59!Shox2;;chr6:52190668..52190682,-!p3@Hoxa10!0.75!4.59!Hoxa10;;chr1:186556410..186556424,-!p1@Hlx!0.74!15.19!Hlx;;chr15:102087737..102087801,-!p3@Rarg!0.74!7.77!Rarg;;chr6:72185210..72185228,-!p3@Atoh8!0.73!7.77!Atoh8;;chr13:72101178..72101203,-!p1@Irx1!0.73!7.07!Irx1;;chr1:186556375..186556404,-!p3@Hlx!0.72!8.13!Hlx;;chr8:94881872..94881887,+!p2@Irx5!0.72!4.59!Irx5;;chr4:134676555..134676575,+!p2@Runx3!0.72!4.24!Runx3;;chr19:59534008..59534046,+!p7@Emx2!0.72!4.24!Emx2;;chr19:5424822..5424845,-!p3@Drap1!0.71!18.02!Drap1;;chr13:31717548..31717596,+!p1@Foxf2!0.71!8.83!Foxf2;;chr12:9581262..9581282,+!p1@Osr1!0.69!53.00!Osr1;;chr19:28754692..28754757,-!p1@Glis3!0.69!18.02!Glis3;;chr19:55816546..55816556,+!p3@Tcf7l2!0.69!16.61!Tcf7l2;;chr10:67375342..67375365,-!p3@Zfp365!0.69!3.89!Zfp365;;chr2:71367871..71367898,+!p1@Dlx1!0.69!3.89!Dlx1;;chr6:52176144..52176161,-!p2@Hoxa9!0.69!3.89!Hoxa9;;chr7:35904304..35904320,+!p1@Cebpa!0.68!88.69!Cebpa;;chr3:5218629..5218684,+!p1@Zfhx4!0.68!13.78!Zfhx4;;chr13:72766279..72766296,+!p2@Irx2!0.68!6.01!Irx2;;chr1:165243653..165243664,-!p4@Prrx1!0.68!5.65!Prrx1;;chr15:102076870..102076941,-!p1@Rarg!0.67!46.29!Rarg;;chr11:94981424..94981439,+!p1@Dlx3!0.67!4.24!Dlx3;;chr10:80889867..80889924,-!p1@Nfic!0.66!116.60!Nfic;;chr12:34642510..34642530,+!p1@Twist1!0.66!12.72!Twist1;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!0.66!5.30!Carhsp1;;chr15:102820964..102821006,+!p1@Hoxc8!0.66!3.53!Hoxc8;;chr12:120085700..120085711,+!p1@Sp8!0.66!3.53!Sp8;;chr15:102820946..102820961,+!p3@Hoxc8!0.66!3.53!Hoxc8;;chr19:5424768..5424811,-!p2@Drap1!0.65!77.38!Drap1;;chr5:53981592..53981616,+!p3@Rbpj!0.65!7.07!Rbpj;;chr19:46380235..46380277,+!p3@Nfkb2!0.64!8.13!Nfkb2;;chr12:9581284..9581303,+!p2@Osr1!0.64!7.07!Osr1;;chr16:4594740..4594759,+!p1@Glis2!0.63!43.81!Glis2;;chr15:102087880..102087927,-!p2@Rarg!0.63!8.48!Rarg;;chr1:57029281..57029326,-!p1@Satb2!0.62!5.30!Satb2;;chr7:52960730..52960762,+!p3@Dbp!0.62!4.24!Dbp;;chr13:99124236..99124243,+!p2@Foxd1!0.62!3.18!Foxd1;;chr15:102839976..102839989,+!p4@Hoxc6!0.62!3.18!Hoxc6;;chr6:6831928..6831949,-!p3@Dlx5!0.62!3.18!Dlx5;;chr8:123640090..123640101,+!p2@Foxc2!0.61!3.53!Foxc2;;chr7:144506077..144506128,-!p1@Ebf3!0.60!7.77!Ebf3;;chr6:115310872..115310899,+!p2@Pparg!0.60!5.65!Pparg;;chr6:115311030..115311065,+!p4@Pparg!0.60!4.59!Pparg;;chr2:152758938..152758954,-!p2@Foxs1!0.59!4.24!Foxs1;;chr4:135699731..135699747,+!p1@Id3!0.58!391.85!Id3;;chrX:7339938..7339963,+!p1@Tfe3!0.58!16.96!Tfe3;;chr1:93698030..93698064,+!p1@Twist2!0.58!6.36!Twist2;;chrX:7341077..7341091,+!p5@Tfe3!0.58!5.30!Tfe3;;chr3:99044284..99044308,+!p4@Tbx15!0.58!2.83!Tbx15;;chr13:55932739..55932756,-!p5@Pitx1!0.58!2.83!Pitx1;;chr12:74147860..74147888,-!p2@Six1!0.58!2.83!Six1;;chr11:44430812..44430838,+!p1@Ebf1!0.57!32.86!Ebf1;;chr9:96653072..96653154,-!p1@Zbtb38!0.57!8.48!Zbtb38;;chr14:65977427..65977452,+!p4@Zfp395!0.56!7.42!Zfp395;;chr8:94325814..94325839,-!p2@Irx3!0.56!6.36!Irx3;;chr13:72101161..72101177,-!p2@Irx1!0.56!3.89!Irx1;;chr10:119913278..119913298,-!p2@Hmga2!0.55!6.71!Hmga2;;chr10:67375146..67375208,-!p2@Zfp365!0.55!4.24!Zfp365;;chr12:9581317..9581333,+!p3@Osr1!0.55!4.24!Osr1;;chr6:72185179..72185196,-!p4@Atoh8!0.54!3.53!Atoh8;;chr2:38206744..38206766,+!p1@Lhx2!0.54!3.18!Lhx2;;chr2:30700830..30700843,+!p4@Prrx2!0.54!2.47!Prrx2;;chr6:52184901..52184959,-!p2@Hoxa10!0.54!2.47!Hoxa10;;chr13:72766234..72766243,+!p3@Irx2!0.54!2.47!Irx2;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.52!17.31!Zbtb11;;chr1:165243379..165243402,-!p3@Prrx1!0.52!3.89!Prrx1;;chr12:9581243..9581254,+!p4@Osr1!0.52!3.53!Osr1;;chr15:102076652..102076679,-!p4@Rarg!0.51!4.59!Rarg;;chr8:94325486..94325510,-!p4@Irx3!0.51!3.18!Irx3;;chr10:119913546..119913583,-!p3@Hmga2!0.50!5.30!Hmga2;;chr10:126727842..126727859,+!p1@Ddit3!0.49!80.91!Ddit3;;chr15:76287876..76287894,+!p1@Scx!0.49!14.84!Scx;;chr12:74214394..74214422,-!p1@Six4!0.49!3.18!Six4;;chr13:31717775..31717788,+!p4@Foxf2!0.49!2.12!Foxf2;;chr2:71367142..71367167,+!p2@Dlx1!0.49!2.12!Dlx1;;chr4:149611832..149611846,+!p3@LOC100045967,p3@LOC100503183,p4@Eno1,p4@Gm5506!0.49!2.12!Eno1;;chr10:80811972..80811985,-!p8@Hmg20b!0.49!2.12!Hmg20b;;chr6:52183482..52183486,-!p10@Hoxa10!0.49!2.12!Hoxa10;;chr16:92697560..92697592,-!p2@Runx1!0.48!16.61!Runx1;;chr10:92773818..92773906,-!p2@Elk3!0.48!12.37!Elk3;;chr6:72739034..72739055,-!p3@Tcf7l1!0.48!5.30!Tcf7l1;;chr6:72185553..72185612,-!p2@Atoh8!0.48!4.59!Atoh8;;chr4:133801432..133801448,-!p3@Zfp593!0.48!3.53!Zfp593;;chr15:81977802..81977828,+!p2@Srebf2!0.47!22.61!Srebf2;;chr13:55431084..55431137,-!p1@Mxd3!0.47!20.14!Mxd3;;chr17:84587077..84587097,-!p4@Zfp36l2!0.47!2.83!Zfp36l2;;chr15:79178013..79178028,+!p3@Maff!0.47!2.83!Maff;;chr2:167514456..167514473,+!p1@Cebpb!0.46!115.54!Cebpb;;chr16:43619101..43619151,+!p6@Zbtb20!0.46!5.65!Zbtb20;;chr12:86940300..86940312,+!p2@Jdp2!0.46!5.65!Jdp2;;chr15:50720601..50720630,-!p2@Trps1!0.46!5.65!Trps1;;chr7:13420092..13420160,+!p2@Zfp110!0.46!4.24!Zfp110;;chr15:81977766..81977789,+!p3@Srebf2!0.45!15.55!Srebf2;;chr13:72101141..72101158,-!p3@Irx1!0.45!2.47!Irx1;;chr6:115310968..115310980,+!p8@Pparg!0.45!2.12!Pparg;;chr16:15887371..15887385,+!p1@Cebpd!0.44!84.80!Cebpd;;chr17:35653725..35653780,-!p1@Tcf19!0.44!41.34!Tcf19;;chr10:26093876..26093894,-!p2@L3mbtl3!0.44!5.30!L3mbtl3;;chr15:102821007..102821021,+!p2@Hoxc8!0.44!1.77!Hoxc8;;chr12:120085778..120085784,+!p2@Sp8!0.44!1.77!Sp8;;chr1:57028556..57028583,-!p5@Satb2!0.44!1.77!Satb2;;chr2:30701003..30701028,+!p6@Prrx2!0.44!1.77!Prrx2;;chr19:59534052..59534083,+!p8@Emx2!0.44!1.77!Emx2;;chr9:87625998..87626007,-!p4@Tbx18!0.44!1.77!Tbx18;;chr17:44951431..44951445,-!p3@Runx2!0.44!1.77!Runx2;;chr17:84587279..84587294,-!p1@Zfp36l2!0.43!259.35!Zfp36l2;;chr2:152561980..152561997,+!p1@Id1!0.43!71.73!Id1;;chr2:91864661..91864686,-!p1@Creb3l1!0.43!52.65!Creb3l1;;chr19:46379199..46379301,+!p1@Nfkb2!0.43!13.43!Nfkb2;;chr10:114821393..114821431,-!p5@Thap2!0.43!6.01!Thap2;;chr18:83079981..83080037,+!p6@Zfp516!0.43!3.53!Zfp516;;chr19:28754600..28754612,-!p2@Glis3!0.43!3.18!Glis3;;chr7:52960780..52960793,+!p5@Dbp!0.43!2.12!Dbp;;chr11:5761889..5761969,+!p1@Aebp1!0.42!100.70!Aebp1;;chrX:137077653..137077669,-!p3@Tsc22d3!0.42!10.25!Tsc22d3;;chr9:63869751..63869767,-!p1@Smad6!0.42!5.65!Smad6;;chr4:134708451..134708469,+!p1@Runx3!0.42!3.53!Runx3;;chr5:65203599..65203617,+!p8@Klf3!0.42!3.18!Klf3;;chr11:96145450..96145517,+!p2@Hoxb7!0.42!2.83!Hoxb7;;chr19:46380172..46380231,+!p2@Nfkb2!0.41!15.55!Nfkb2;;chr11:44431687..44431706,+!p2@Ebf1!0.41!10.25!Ebf1;;chr2:44965856..44965896,-!p5@Zeb2!0.41!8.48!Zeb2;;chr1:186556323..186556370,-!p2@Hlx!0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| ||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
Line 41: | Line 45: | ||
|is_a=EFO:0002091;;FF:0000488 | |is_a=EFO:0002091;;FF:0000488 | ||
|is_obsolete= | |is_obsolete= | ||
|name=ST2 (Mesenchymal stem cells) cells, medium change (without induction | |library_id=CNhs13324 | ||
|library_id_phase_based=2:CNhs13324 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;12582 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;12582 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm9.nobarcode.rdna.fa.gz | |||
|name=ST2 (Mesenchymal stem cells) cells, medium change (without induction) | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13324,LSID1021,release013,COMPLETED | |profile_hcage=CNhs13324,LSID1021,release013,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,0.206608985662162,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.0604865691906947,0,0,0,0,0,0.540751926847053,0,0,0,0,0,0,0,-0.24455162463,0,0,0,0,0,-0.027543393338898,-0.0661618130246221,-0.256911889361113,-0.984211366477826,-0.269868638010351,0.382621804010162,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0.142314959707217,0.322979824281548,0,-0.0137840679941754,-0.177522387348331,-0.310650657339386,-0.158091042771083,-0.100090321582142,0,-0.0780086007519514,-0.098514232005992,-0.0978737409346135,0,0,-0.0575963448243672,-0.178397003737581,0.203432122257288,-0.0788315948399074,0,0,0,0,0,0,0.0469987527915884,0.0816414725903614,0.501094468188799,0,0,0.13140678169188,0,0 | |repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,0.206608985662162,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.0604865691906947,0,0,0,0,0,0.540751926847053,0,0,0,0,0,0,0,-0.24455162463,0,0,0,0,0,-0.027543393338898,-0.0661618130246221,-0.256911889361113,-0.984211366477826,-0.269868638010351,0.382621804010162,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0.142314959707217,0.322979824281548,0,-0.0137840679941754,-0.177522387348331,-0.310650657339386,-0.158091042771083,-0.100090321582142,0,-0.0780086007519514,-0.098514232005992,-0.0978737409346135,0,0,-0.0575963448243672,-0.178397003737581,0.203432122257288,-0.0788315948399074,0,0,0,0,0,0,0.0469987527915884,0.0816414725903614,0.501094468188799,0,0,0.13140678169188,0,0 | ||
Line 60: | Line 75: | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id=133I8 | |rna_tube_id=133I8 | ||
|rna_weight_ug=5. | |rna_weight_ug=5.5 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=ST2 | |sample_cell_line=ST2 | ||
Line 80: | Line 96: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|time=00hr | |||
|timecourse=MSC_to_adipocyte_(mouse),MSC_to_osteocyte_(mouse) | |||
|top_motifs=NKX3-1:2.10063630336;FOXP3:1.94508113506;HAND1,2:1.7389384175;CDC5L:1.67775953686;TEF:1.64668911105;ALX4:1.57400598997;UFEwm:1.52156259403;BACH2:1.47098190539;IRF7:1.33897099855;GLI1..3:1.32530100572;HES1:1.30907785226;HSF1,2:1.30308816875;NFE2L2:1.2777479094;SRF:1.11495204804;TP53:1.02330814314;ZNF238:0.956315634579;POU1F1:0.948011864329;TEAD1:0.946248467893;ZBTB16:0.946241339684;HMX1:0.914838453296;IKZF2:0.900871410035;CDX1,2,4:0.872709324435;NFE2:0.824050275048;PDX1:0.816462685073;RXR{A,B,G}:0.808678254069;NFE2L1:0.793178635507;ZNF384:0.790680854353;FOXL1:0.755484361649;RUNX1..3:0.740094314893;EVI1:0.691671100813;GCM1,2:0.686595518408;ZNF423:0.669344204034;TLX1..3_NFIC{dimer}:0.640713044785;FOS_FOS{B,L1}_JUN{B,D}:0.635223466758;ELK1,4_GABP{A,B1}:0.583518098385;YY1:0.574009201664;HIF1A:0.560662335451;ESR1:0.560292841684;DMAP1_NCOR{1,2}_SMARC:0.555031178552;HMGA1,2:0.518832274026;SREBF1,2:0.475717001447;NFATC1..3:0.469949220805;RBPJ:0.467056904896;NKX2-3_NKX2-5:0.46518689566;NR3C1:0.458724855254;ONECUT1,2:0.447885950941;CEBPA,B_DDIT3:0.443462384791;E2F1..5:0.440101421461;PAX8:0.433201023112;HLF:0.389204411375;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.375254474213;EN1,2:0.352902027637;NANOG{mouse}:0.344537001672;NKX2-2,8:0.33044461628;POU3F1..4:0.321629857051;TFAP4:0.305019404844;KLF4:0.303674876682;MYB:0.302422869249;MYBL2:0.292606412919;PAX4:0.282245145526;SMAD1..7,9:0.278241725388;ATF4:0.274617804342;SOX17:0.253615243799;MTE{core}:0.247797010805;NFIL3:0.238300470401;FOXM1:0.231204210757;POU2F1..3:0.22658968778;HOX{A5,B5}:0.197302084464;NR1H4:0.196205936039;GFI1B:0.184192119916;NKX2-1,4:0.170300799307;STAT2,4,6:0.142391936149;TFCP2:0.0991169310572;ALX1:0.0873456708995;POU5F1:0.0855192107798;FOSL2:0.0754374308423;GFI1:0.0749879174867;GATA4:0.0537488101123;NR5A1,2:0.0480144710708;ELF1,2,4:0.029015421536;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0254083192013;ATF6:0.0166141531334;IKZF1:0.011755616769;SOX5:-0.00611005354611;PPARG:-0.0222410939008;SPIB:-0.0233959875155;RFX1:-0.0256978225784;NR6A1:-0.0334352632103;NKX6-1,2:-0.0366158466559;IRF1,2:-0.0427372544424;PAX5:-0.0476297207781;GZF1:-0.0561782921372;EBF1:-0.0985774418976;GTF2I:-0.125539465046;HOX{A4,D4}:-0.139640570371;ZNF143:-0.152496020763;NRF1:-0.160396076445;AHR_ARNT_ARNT2:-0.164131148606;T:-0.193755009257;FOXD3:-0.235970568479;TBP:-0.236642376173;TAL1_TCF{3,4,12}:-0.270297832835;HIC1:-0.272761760324;NFY{A,B,C}:-0.281948881464;ZBTB6:-0.290164389969;XCPE1{core}:-0.294361693678;HOXA9_MEIS1:-0.295064857454;LHX3,4:-0.299073370349;NKX3-2:-0.30640144875;SPI1:-0.309916458083;GTF2A1,2:-0.313643174594;HBP1_HMGB_SSRP1_UBTF:-0.317065291708;RXRA_VDR{dimer}:-0.339047318216;NFKB1_REL_RELA:-0.357742211957;DBP:-0.359270991417;HNF4A_NR2F1,2:-0.36486278031;FOX{F1,F2,J1}:-0.367270816728;TOPORS:-0.372674980764;CREB1:-0.395368560499;MAFB:-0.433607823567;AR:-0.438467997881;RFX2..5_RFXANK_RFXAP:-0.465751943524;MAZ:-0.470884340742;RREB1:-0.472122921745;REST:-0.472463864558;ATF5_CREB3:-0.47344109982;EP300:-0.504384570062;TFAP2{A,C}:-0.519884735283;STAT1,3:-0.521009239431;AIRE:-0.52512706784;PRDM1:-0.538259316861;TFAP2B:-0.557366558129;ADNP_IRX_SIX_ZHX:-0.566743389183;MEF2{A,B,C,D}:-0.572296675611;HNF1A:-0.573803904223;FOXO1,3,4:-0.580752444768;JUN:-0.58624375523;PAX6:-0.615027952759;CRX:-0.615272833203;SOX{8,9,10}:-0.61594504318;ZNF148:-0.624998820313;ETS1,2:-0.630161166906;PITX1..3:-0.636511500697;EGR1..3:-0.640573680503;OCT4_SOX2{dimer}:-0.66905602541;PRRX1,2:-0.67264002413;RORA:-0.673615565937;TFDP1:-0.675918697951;ARID5B:-0.723379396537;ZFP161:-0.739075230885;BREu{core}:-0.750974546836;POU6F1:-0.761841084109;bHLH_family:-0.769240670032;FOX{D1,D2}:-0.771291164605;FOXP1:-0.773077964338;MZF1:-0.777434293707;MTF1:-0.790909660637;PATZ1:-0.814241231406;FOXA2:-0.816455168581;FOXQ1:-0.826281716911;SP1:-0.834031998954;FOX{I1,J2}:-0.858372478165;ATF2:-0.861569745973;MED-1{core}:-0.886594471604;PAX2:-0.904440451133;FOXN1:-0.929893278198;TBX4,5:-0.937509916189;NFIX:-0.942436151054;BPTF:-0.945685379646;ESRRA:-0.946718119661;VSX1,2:-0.961837097639;NHLH1,2:-0.975485907437;ZIC1..3:-1.00398165891;NANOG:-1.10877979389;SOX2:-1.12805142233;MYFfamily:-1.15512551082;TLX2:-1.15657361424;PAX1,9:-1.17252595052;CUX2:-1.21669026201;GATA6:-1.27997499649;STAT5{A,B}:-1.33742946554;SPZ1:-1.47681074881;TGIF1:-1.4813613693;PBX1:-1.50779812709;LEF1_TCF7_TCF7L1,2:-1.58065716226;ZEB1:-1.84870586137;SNAI1..3:-1.92640859572;LMO2:-2.30233978716;MYOD1:-2.94926272644 | |top_motifs=NKX3-1:2.10063630336;FOXP3:1.94508113506;HAND1,2:1.7389384175;CDC5L:1.67775953686;TEF:1.64668911105;ALX4:1.57400598997;UFEwm:1.52156259403;BACH2:1.47098190539;IRF7:1.33897099855;GLI1..3:1.32530100572;HES1:1.30907785226;HSF1,2:1.30308816875;NFE2L2:1.2777479094;SRF:1.11495204804;TP53:1.02330814314;ZNF238:0.956315634579;POU1F1:0.948011864329;TEAD1:0.946248467893;ZBTB16:0.946241339684;HMX1:0.914838453296;IKZF2:0.900871410035;CDX1,2,4:0.872709324435;NFE2:0.824050275048;PDX1:0.816462685073;RXR{A,B,G}:0.808678254069;NFE2L1:0.793178635507;ZNF384:0.790680854353;FOXL1:0.755484361649;RUNX1..3:0.740094314893;EVI1:0.691671100813;GCM1,2:0.686595518408;ZNF423:0.669344204034;TLX1..3_NFIC{dimer}:0.640713044785;FOS_FOS{B,L1}_JUN{B,D}:0.635223466758;ELK1,4_GABP{A,B1}:0.583518098385;YY1:0.574009201664;HIF1A:0.560662335451;ESR1:0.560292841684;DMAP1_NCOR{1,2}_SMARC:0.555031178552;HMGA1,2:0.518832274026;SREBF1,2:0.475717001447;NFATC1..3:0.469949220805;RBPJ:0.467056904896;NKX2-3_NKX2-5:0.46518689566;NR3C1:0.458724855254;ONECUT1,2:0.447885950941;CEBPA,B_DDIT3:0.443462384791;E2F1..5:0.440101421461;PAX8:0.433201023112;HLF:0.389204411375;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.375254474213;EN1,2:0.352902027637;NANOG{mouse}:0.344537001672;NKX2-2,8:0.33044461628;POU3F1..4:0.321629857051;TFAP4:0.305019404844;KLF4:0.303674876682;MYB:0.302422869249;MYBL2:0.292606412919;PAX4:0.282245145526;SMAD1..7,9:0.278241725388;ATF4:0.274617804342;SOX17:0.253615243799;MTE{core}:0.247797010805;NFIL3:0.238300470401;FOXM1:0.231204210757;POU2F1..3:0.22658968778;HOX{A5,B5}:0.197302084464;NR1H4:0.196205936039;GFI1B:0.184192119916;NKX2-1,4:0.170300799307;STAT2,4,6:0.142391936149;TFCP2:0.0991169310572;ALX1:0.0873456708995;POU5F1:0.0855192107798;FOSL2:0.0754374308423;GFI1:0.0749879174867;GATA4:0.0537488101123;NR5A1,2:0.0480144710708;ELF1,2,4:0.029015421536;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0254083192013;ATF6:0.0166141531334;IKZF1:0.011755616769;SOX5:-0.00611005354611;PPARG:-0.0222410939008;SPIB:-0.0233959875155;RFX1:-0.0256978225784;NR6A1:-0.0334352632103;NKX6-1,2:-0.0366158466559;IRF1,2:-0.0427372544424;PAX5:-0.0476297207781;GZF1:-0.0561782921372;EBF1:-0.0985774418976;GTF2I:-0.125539465046;HOX{A4,D4}:-0.139640570371;ZNF143:-0.152496020763;NRF1:-0.160396076445;AHR_ARNT_ARNT2:-0.164131148606;T:-0.193755009257;FOXD3:-0.235970568479;TBP:-0.236642376173;TAL1_TCF{3,4,12}:-0.270297832835;HIC1:-0.272761760324;NFY{A,B,C}:-0.281948881464;ZBTB6:-0.290164389969;XCPE1{core}:-0.294361693678;HOXA9_MEIS1:-0.295064857454;LHX3,4:-0.299073370349;NKX3-2:-0.30640144875;SPI1:-0.309916458083;GTF2A1,2:-0.313643174594;HBP1_HMGB_SSRP1_UBTF:-0.317065291708;RXRA_VDR{dimer}:-0.339047318216;NFKB1_REL_RELA:-0.357742211957;DBP:-0.359270991417;HNF4A_NR2F1,2:-0.36486278031;FOX{F1,F2,J1}:-0.367270816728;TOPORS:-0.372674980764;CREB1:-0.395368560499;MAFB:-0.433607823567;AR:-0.438467997881;RFX2..5_RFXANK_RFXAP:-0.465751943524;MAZ:-0.470884340742;RREB1:-0.472122921745;REST:-0.472463864558;ATF5_CREB3:-0.47344109982;EP300:-0.504384570062;TFAP2{A,C}:-0.519884735283;STAT1,3:-0.521009239431;AIRE:-0.52512706784;PRDM1:-0.538259316861;TFAP2B:-0.557366558129;ADNP_IRX_SIX_ZHX:-0.566743389183;MEF2{A,B,C,D}:-0.572296675611;HNF1A:-0.573803904223;FOXO1,3,4:-0.580752444768;JUN:-0.58624375523;PAX6:-0.615027952759;CRX:-0.615272833203;SOX{8,9,10}:-0.61594504318;ZNF148:-0.624998820313;ETS1,2:-0.630161166906;PITX1..3:-0.636511500697;EGR1..3:-0.640573680503;OCT4_SOX2{dimer}:-0.66905602541;PRRX1,2:-0.67264002413;RORA:-0.673615565937;TFDP1:-0.675918697951;ARID5B:-0.723379396537;ZFP161:-0.739075230885;BREu{core}:-0.750974546836;POU6F1:-0.761841084109;bHLH_family:-0.769240670032;FOX{D1,D2}:-0.771291164605;FOXP1:-0.773077964338;MZF1:-0.777434293707;MTF1:-0.790909660637;PATZ1:-0.814241231406;FOXA2:-0.816455168581;FOXQ1:-0.826281716911;SP1:-0.834031998954;FOX{I1,J2}:-0.858372478165;ATF2:-0.861569745973;MED-1{core}:-0.886594471604;PAX2:-0.904440451133;FOXN1:-0.929893278198;TBX4,5:-0.937509916189;NFIX:-0.942436151054;BPTF:-0.945685379646;ESRRA:-0.946718119661;VSX1,2:-0.961837097639;NHLH1,2:-0.975485907437;ZIC1..3:-1.00398165891;NANOG:-1.10877979389;SOX2:-1.12805142233;MYFfamily:-1.15512551082;TLX2:-1.15657361424;PAX1,9:-1.17252595052;CUX2:-1.21669026201;GATA6:-1.27997499649;STAT5{A,B}:-1.33742946554;SPZ1:-1.47681074881;TGIF1:-1.4813613693;PBX1:-1.50779812709;LEF1_TCF7_TCF7L1,2:-1.58065716226;ZEB1:-1.84870586137;SNAI1..3:-1.92640859572;LMO2:-2.30233978716;MYOD1:-2.94926272644 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:12582-133I8;search_select_hide=table117:12582-133I8 | |||
}} | }} |
Latest revision as of 18:40, 4 June 2020
Name: | ST2 (Mesenchymal stem cells) cells, medium change (without induction) |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs13324 |
Sample type: | time courses |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs13324
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.131 |
1001 | 0.0161 |
1002 | -0.116 |
1003 | 0.0794 |
1004 | 0 |
1005 | 0 |
1006 | -0.09 |
1007 | -0.0484 |
1008 | 0 |
1009 | 0.733 |
101 | -0.0667 |
1010 | 0 |
1011 | -0.166 |
1012 | 0 |
1013 | 0.0443 |
1014 | -0.0874 |
1015 | 0.221 |
1016 | 0.0754 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0.232 |
1022 | -0.124 |
1023 | 0 |
1024 | -0.307 |
1025 | -0.0611 |
1026 | 0 |
1027 | 0 |
1028 | 0 |
1029 | -0.176 |
103 | 0.442 |
1030 | 0 |
1031 | -0.395 |
1032 | -0.0522 |
1033 | -0.0322 |
1034 | 0 |
1035 | 0 |
1036 | 0.131 |
1037 | 0 |
1038 | 0.0377 |
1039 | -0.0317 |
104 | 0 |
1040 | 0.406 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13324
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13324
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.172 |
10 | 10 | 0.0068 |
100 | 100 | 0.929 |
101 | 101 | 0.472 |
102 | 102 | 0.289 |
103 | 103 | 0.141 |
104 | 104 | 0.906 |
105 | 105 | 0.621 |
106 | 106 | 0.633 |
107 | 107 | 0.743 |
108 | 108 | 0.345 |
109 | 109 | 0.0205 |
11 | 11 | 0.0997 |
110 | 110 | 0.0288 |
111 | 111 | 0.352 |
112 | 112 | 0.898 |
113 | 113 | 0.0812 |
114 | 114 | 0.356 |
115 | 115 | 0.703 |
116 | 116 | 0.0283 |
117 | 117 | 5.35328e-4 |
118 | 118 | 0.895 |
119 | 119 | 0.271 |
12 | 12 | 0.933 |
120 | 120 | 0.152 |
121 | 121 | 0.822 |
122 | 122 | 0.207 |
123 | 123 | 0.328 |
124 | 124 | 0.24 |
125 | 125 | 0.194 |
126 | 126 | 0.276 |
127 | 127 | 0.0548 |
128 | 128 | 0.775 |
129 | 129 | 0.59 |
13 | 13 | 0.00876 |
130 | 130 | 0.524 |
131 | 131 | 0.563 |
132 | 132 | 0.476 |
133 | 133 | 0.141 |
134 | 134 | 0.624 |
135 | 135 | 0.343 |
136 | 136 | 0.575 |
137 | 137 | 0.671 |
138 | 138 | 0.545 |
139 | 139 | 0.218 |
14 | 14 | 0.472 |
140 | 140 | 0.546 |
141 | 141 | 0.613 |
142 | 142 | 0.958 |
143 | 143 | 0.0409 |
144 | 144 | 0.205 |
145 | 145 | 0.117 |
146 | 146 | 0.352 |
147 | 147 | 0.983 |
148 | 148 | 0.644 |
149 | 149 | 0.265 |
15 | 15 | 0.849 |
150 | 150 | 0.0309 |
151 | 151 | 0.996 |
152 | 152 | 0.118 |
153 | 153 | 0.762 |
154 | 154 | 0.48 |
155 | 155 | 0.151 |
156 | 156 | 7.1938e-60 |
157 | 157 | 0.863 |
158 | 158 | 0.717 |
159 | 159 | 0.395 |
160 | 160 | 0.486 |
161 | 161 | 0.613 |
162 | 162 | 0.893 |
163 | 163 | 0.976 |
164 | 164 | 0.00209 |
165 | 165 | 0.809 |
166 | 166 | 0.67 |
167 | 167 | 0.171 |
168 | 168 | 0.456 |
169 | 169 | 0.00131 |
17 | 17 | 0.16 |
18 | 18 | 0.267 |
19 | 19 | 0.304 |
2 | 2 | 0.39 |
20 | 20 | 0.0461 |
21 | 21 | 0.0836 |
22 | 22 | 0.247 |
23 | 23 | 0.171 |
24 | 24 | 0.98 |
25 | 25 | 0.95 |
26 | 26 | 0.0399 |
27 | 27 | 0.441 |
28 | 28 | 0.644 |
29 | 29 | 0.00227 |
3 | 3 | 0.0778 |
30 | 30 | 0.491 |
31 | 31 | 0.772 |
32 | 32 | 0.395 |
33 | 33 | 0.328 |
34 | 34 | 0.788 |
35 | 35 | 0.356 |
36 | 36 | 0.0898 |
37 | 37 | 0.0151 |
38 | 38 | 0.574 |
39 | 39 | 0.366 |
4 | 4 | 0.588 |
40 | 40 | 0.473 |
41 | 41 | 0.16 |
42 | 42 | 0.287 |
43 | 43 | 0.425 |
44 | 44 | 0.201 |
45 | 45 | 0.649 |
46 | 46 | 0.307 |
47 | 47 | 0.166 |
48 | 48 | 0.269 |
49 | 49 | 0.9 |
5 | 5 | 0.0618 |
50 | 50 | 0.614 |
51 | 51 | 0.885 |
52 | 52 | 0.851 |
53 | 53 | 0.534 |
54 | 54 | 0.546 |
55 | 55 | 0.63 |
56 | 56 | 0.812 |
57 | 57 | 0.235 |
58 | 58 | 0.835 |
59 | 59 | 0.163 |
6 | 6 | 0.649 |
60 | 60 | 0.342 |
61 | 61 | 0.678 |
62 | 62 | 0.449 |
63 | 63 | 0.51 |
64 | 64 | 0.511 |
65 | 65 | 0.852 |
66 | 66 | 0.58 |
67 | 67 | 0.728 |
68 | 68 | 0.682 |
69 | 69 | 0.938 |
7 | 7 | 0.278 |
70 | 70 | 0.00256 |
71 | 71 | 8.21729e-4 |
72 | 72 | 0.918 |
73 | 73 | 0.0188 |
74 | 74 | 0.971 |
75 | 75 | 0.0465 |
76 | 76 | 0.175 |
77 | 77 | 0.226 |
78 | 78 | 0.048 |
79 | 79 | 0.756 |
8 | 8 | 0.0764 |
80 | 80 | 0.00944 |
81 | 81 | 0.7 |
82 | 82 | 0.2 |
83 | 83 | 0.589 |
84 | 84 | 0.662 |
85 | 85 | 0.561 |
86 | 86 | 0.659 |
87 | 87 | 0.178 |
88 | 88 | 0.675 |
89 | 89 | 0.869 |
9 | 9 | 0.867 |
90 | 90 | 0.0378 |
91 | 91 | 0.413 |
92 | 92 | 0.673 |
93 | 93 | 0.291 |
94 | 94 | 0.687 |
95 | 95 | 0.0189 |
96 | 96 | 0.411 |
97 | 97 | 0.689 |
98 | 98 | 0.309 |
99 | 99 | 0.853 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13324
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000488 mouse ST2 Mesenchymal stem cells, cells 0hr after medium change , without induction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000350 (experimentally modified sample)
0000404 (mouse mesenchymal stem cell line: ST2 sample)
0000333 (medium change sample)
0000357 (0 hr sample)
0000488 (mouse ST2 Mesenchymal stem cells, cells 0hr after medium change , without induction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)