FF:12582-133I8: Difference between revisions

Latest revision as of 18:40, 4 June 2020

Name:	ST2 (Mesenchymal stem cells) cells, medium change (without induction)
Species:	Mouse (Mus musculus)
Library ID:	CNhs13324
Sample type:	time courses
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal stem cell
cell line	ST2
company	NA
collaboration	Yasushi Okazaki (Saitama medical college)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005351

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13324		CAGE		DRX008907		DRR009781

Accession ID Mm9

Library id		BAM		CTSS
CNhs13324		DRZ001206		DRZ002589

Accession ID Mm10

Library id		BAM		CTSS
CNhs13324		DRZ012556		DRZ013939

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13324

0	0
1	0
10	0
100	0
1000	0.131
1001	0.0161
1002	-0.116
1003	0.0794
1004	0
1005	0
1006	-0.09
1007	-0.0484
1008	0
1009	0.733
101	-0.0667
1010	0
1011	-0.166
1012	0
1013	0.0443
1014	-0.0874
1015	0.221
1016	0.0754
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.232
1022	-0.124
1023	0
1024	-0.307
1025	-0.0611
1026	0
1027	0
1028	0
1029	-0.176
103	0.442
1030	0
1031	-0.395
1032	-0.0522
1033	-0.0322
1034	0
1035	0
1036	0.131
1037	0
1038	0.0377
1039	-0.0317
104	0
1040	0.406
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13324

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.114
MA0003.1	MA0003.1	0.649
MA0004.1	MA0004.1	0.312
MA0006.1	MA0006.1	0.529
MA0007.1	MA0007.1	0.476
MA0009.1	MA0009.1	0.578
MA0014.1	MA0014.1	0.208
MA0017.1	MA0017.1	0.366
MA0018.2	MA0018.2	0.166
MA0019.1	MA0019.1	0.911
MA0024.1	MA0024.1	0.279
MA0025.1	MA0025.1	0.914
MA0027.1	MA0027.1	0.176
MA0028.1	MA0028.1	0.00629
MA0029.1	MA0029.1	0.554
MA0030.1	MA0030.1	0.429
MA0031.1	MA0031.1	0.29
MA0035.2	MA0035.2	0.0248
MA0038.1	MA0038.1	0.9
MA0039.2	MA0039.2	0.976
MA0040.1	MA0040.1	0.528
MA0041.1	MA0041.1	0.78
MA0042.1	MA0042.1	0.518
MA0043.1	MA0043.1	0.669
MA0046.1	MA0046.1	4.96545e-7
MA0047.2	MA0047.2	0.527
MA0048.1	MA0048.1	3.55386e-4
MA0050.1	MA0050.1	0.814
MA0051.1	MA0051.1	0.962
MA0052.1	MA0052.1	0.00207
MA0055.1	MA0055.1	2.43341e-4
MA0057.1	MA0057.1	0.166
MA0058.1	MA0058.1	0.11
MA0059.1	MA0059.1	0.193
MA0060.1	MA0060.1	0.0172
MA0061.1	MA0061.1	0.389
MA0062.2	MA0062.2	0.0017
MA0065.2	MA0065.2	0.103
MA0066.1	MA0066.1	0.199
MA0067.1	MA0067.1	0.856
MA0068.1	MA0068.1	0.258
MA0069.1	MA0069.1	0.605
MA0070.1	MA0070.1	0.239
MA0071.1	MA0071.1	0.568
MA0072.1	MA0072.1	0.739
MA0073.1	MA0073.1	0.645
MA0074.1	MA0074.1	0.706
MA0076.1	MA0076.1	0.0213
MA0077.1	MA0077.1	0.642
MA0078.1	MA0078.1	0.237
MA0079.2	MA0079.2	0.195
MA0080.2	MA0080.2	0.0467
MA0081.1	MA0081.1	0.339
MA0083.1	MA0083.1	0.00175
MA0084.1	MA0084.1	0.641
MA0087.1	MA0087.1	0.704
MA0088.1	MA0088.1	0.00632
MA0090.1	MA0090.1	0.0941
MA0091.1	MA0091.1	0.456
MA0092.1	MA0092.1	0.142
MA0093.1	MA0093.1	0.299
MA0099.2	MA0099.2	2.01487e-4
MA0100.1	MA0100.1	0.079
MA0101.1	MA0101.1	0.505
MA0102.2	MA0102.2	0.402
MA0103.1	MA0103.1	6.11348e-5
MA0104.2	MA0104.2	0.947
MA0105.1	MA0105.1	0.0484
MA0106.1	MA0106.1	0.00511
MA0107.1	MA0107.1	0.865
MA0108.2	MA0108.2	0.0796
MA0111.1	MA0111.1	0.407
MA0112.2	MA0112.2	0.00486
MA0113.1	MA0113.1	0.865
MA0114.1	MA0114.1	0.923
MA0115.1	MA0115.1	0.585
MA0116.1	MA0116.1	0.0286
MA0117.1	MA0117.1	0.498
MA0119.1	MA0119.1	0.282
MA0122.1	MA0122.1	0.782
MA0124.1	MA0124.1	0.562
MA0125.1	MA0125.1	0.00334
MA0131.1	MA0131.1	0.429
MA0135.1	MA0135.1	0.0593
MA0136.1	MA0136.1	0.649
MA0137.2	MA0137.2	0.114
MA0138.2	MA0138.2	9.49313e-4
MA0139.1	MA0139.1	0.796
MA0140.1	MA0140.1	0.00154
MA0141.1	MA0141.1	0.142
MA0142.1	MA0142.1	0.106
MA0143.1	MA0143.1	0.79
MA0144.1	MA0144.1	0.107
MA0145.1	MA0145.1	0.423
MA0146.1	MA0146.1	0.00247
MA0147.1	MA0147.1	0.88
MA0148.1	MA0148.1	0.729
MA0149.1	MA0149.1	0.0686
MA0150.1	MA0150.1	0.195
MA0152.1	MA0152.1	0.0544
MA0153.1	MA0153.1	8.5661e-5
MA0154.1	MA0154.1	0.155
MA0155.1	MA0155.1	0.935
MA0156.1	MA0156.1	0.557
MA0157.1	MA0157.1	0.775
MA0159.1	MA0159.1	0.32
MA0160.1	MA0160.1	0.558
MA0162.1	MA0162.1	0.0538
MA0163.1	MA0163.1	0.0433
MA0164.1	MA0164.1	0.626
MA0258.1	MA0258.1	0.177
MA0259.1	MA0259.1	0.264

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13324

Novel motif	Logo	P-value
1	1	0.172
10	10	0.0068
100	100	0.929
101	101	0.472
102	102	0.289
103	103	0.141
104	104	0.906
105	105	0.621
106	106	0.633
107	107	0.743
108	108	0.345
109	109	0.0205
11	11	0.0997
110	110	0.0288
111	111	0.352
112	112	0.898
113	113	0.0812
114	114	0.356
115	115	0.703
116	116	0.0283
117	117	5.35328e-4
118	118	0.895
119	119	0.271
12	12	0.933
120	120	0.152
121	121	0.822
122	122	0.207
123	123	0.328
124	124	0.24
125	125	0.194
126	126	0.276
127	127	0.0548
128	128	0.775
129	129	0.59
13	13	0.00876
130	130	0.524
131	131	0.563
132	132	0.476
133	133	0.141
134	134	0.624
135	135	0.343
136	136	0.575
137	137	0.671
138	138	0.545
139	139	0.218
14	14	0.472
140	140	0.546
141	141	0.613
142	142	0.958
143	143	0.0409
144	144	0.205
145	145	0.117
146	146	0.352
147	147	0.983
148	148	0.644
149	149	0.265
15	15	0.849
150	150	0.0309
151	151	0.996
152	152	0.118
153	153	0.762
154	154	0.48
155	155	0.151
156	156	7.1938e-60
157	157	0.863
158	158	0.717
159	159	0.395
160	160	0.486
161	161	0.613
162	162	0.893
163	163	0.976
164	164	0.00209
165	165	0.809
166	166	0.67
167	167	0.171
168	168	0.456
169	169	0.00131
17	17	0.16
18	18	0.267
19	19	0.304
2	2	0.39
20	20	0.0461
21	21	0.0836
22	22	0.247
23	23	0.171
24	24	0.98
25	25	0.95
26	26	0.0399
27	27	0.441
28	28	0.644
29	29	0.00227
3	3	0.0778
30	30	0.491
31	31	0.772
32	32	0.395
33	33	0.328
34	34	0.788
35	35	0.356
36	36	0.0898
37	37	0.0151
38	38	0.574
39	39	0.366
4	4	0.588
40	40	0.473
41	41	0.16
42	42	0.287
43	43	0.425
44	44	0.201
45	45	0.649
46	46	0.307
47	47	0.166
48	48	0.269
49	49	0.9
5	5	0.0618
50	50	0.614
51	51	0.885
52	52	0.851
53	53	0.534
54	54	0.546
55	55	0.63
56	56	0.812
57	57	0.235
58	58	0.835
59	59	0.163
6	6	0.649
60	60	0.342
61	61	0.678
62	62	0.449
63	63	0.51
64	64	0.511
65	65	0.852
66	66	0.58
67	67	0.728
68	68	0.682
69	69	0.938
7	7	0.278
70	70	0.00256
71	71	8.21729e-4
72	72	0.918
73	73	0.0188
74	74	0.971
75	75	0.0465
76	76	0.175
77	77	0.226
78	78	0.048
79	79	0.756
8	8	0.0764
80	80	0.00944
81	81	0.7
82	82	0.2
83	83	0.589
84	84	0.662
85	85	0.561
86	86	0.659
87	87	0.178
88	88	0.675
89	89	0.869
9	9	0.867
90	90	0.0378
91	91	0.413
92	92	0.673
93	93	0.291
94	94	0.687
95	95	0.0189
96	96	0.411
97	97	0.689
98	98	0.309
99	99	0.853

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13324

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000488 mouse ST2 Mesenchymal stem cells, cells 0hr after medium change , without induction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000350 (experimentally modified sample)
0000404 (mouse mesenchymal stem cell line: ST2 sample)
0000333 (medium change sample)
0000357 (0 hr sample)
0000488 (mouse ST2 Mesenchymal stem cells, cells 0hr after medium change , without induction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005351
+|accession_numbers=CAGE;DRX008907;DRR009781;DRZ001206;DRZ002589;DRZ012556;DRZ013939
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000101,FF:0000103,FF:0000001,FF:0000350,FF:0000404,FF:0000333,FF:0000357,FF:0000488
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
+|donor=biol_rep3
 |expression_enrichment_score=chr15:102828658..102828678,+!p1@Hoxc6!1.83!66.43!Hoxc6;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.81!80.91!Zbtb11;;chr19:5447886..5447905,+!p1@Fosl1!1.74!54.06!Fosl1;;chr2:30700881..30700916,+!p1@Prrx2!1.65!79.85!Prrx2;;chr6:52190467..52190500,-!p1@Hoxa10!1.59!37.81!Hoxa10;;chr12:74147689..74147711,-!p1@Six1!1.58!78.79!Six1;;chr2:30700857..30700873,+!p3@Prrx2!1.51!42.40!Prrx2;;chr16:14705925..14705951,+!p1@Snai2!1.47!194.34!Snai2;;chr3:99057269..99057306,+!p1@Tbx15!1.44!32.15!Tbx15;;chr19:5447692..5447711,+!p2@Fosl1!1.42!25.09!Fosl1;;chr15:102797288..102797302,+!p1@Hoxc10!1.42!25.09!Hoxc10;;chr15:102751603..102751630,+!p1@Hoxc13!1.39!23.32!Hoxc13;;chr16:14705961..14705978,+!p2@Snai2!1.38!104.24!Snai2;;chr6:83661226..83661282,+!p1@Vax2!1.37!22.26!Vax2;;chr13:99124189..99124205,+!p1@Foxd1!1.36!32.86!Foxd1;;chr17:44951553..44951586,-!p2@Runx2!1.35!23.67!Runx2;;chr6:52176164..52176195,-!p1@Hoxa9!1.32!24.73!Hoxa9;;chr15:102797225..102797243,+!p2@Hoxc10!1.30!18.73!Hoxc10;;chr6:6831950..6831985,-!p2@Dlx5!1.29!20.49!Dlx5;;chr13:55932591..55932622,-!p1@Pitx1!1.23!19.08!Pitx1;;chr13:31898637..31898653,+!p2@Foxc1!1.20!26.15!Foxc1;;chr15:102751578..102751600,+!p2@Hoxc13!1.20!14.84!Hoxc13;;chr13:31898496..31898519,+!p3@Foxc1!1.18!22.97!Foxc1;;chr2:152758901..152758925,-!p1@Foxs1!1.17!60.42!Foxs1;;chr13:31898729..31898761,+!p1@Foxc1!1.14!31.09!Foxc1;;chr6:6831986..6832007,-!p4@Dlx5!1.14!12.72!Dlx5;;chr13:72766250..72766273,+!p1@Irx2!1.09!17.67!Irx2;;chr12:34642682..34642753,+!p2@Twist1!1.06!28.27!Twist1;;chr8:94881733..94881790,+!p1@Irx5!1.04!19.79!Irx5;;chr9:87625971..87625992,-!p2@Tbx18!1.04!9.89!Tbx18;;chr15:102828642..102828653,+!p2@Hoxc6!1.04!9.89!Hoxc6;;chr10:67375368..67375433,-!p1@Zfp365!1.02!16.96!Zfp365;;chr6:6832076..6832092,-!p1@Dlx5!1.01!10.95!Dlx5;;chr15:102751552..102751563,+!p3@Hoxc13!1.01!9.19!Hoxc13;;chr7:52071956..52071978,-!p1@Atf5!0.99!289.74!Atf5;;chr15:97738692..97738747,-!p1@Vdr!0.99!49.47!Vdr;;chr15:102797170..102797182,+!p3@Hoxc10!0.99!8.83!Hoxc10;;chr1:165243792..165243808,-!p1@Prrx1!0.95!28.27!Prrx1;;chr2:30700788..30700824,+!p2@Prrx2!0.95!12.37!Prrx2;;chr3:66785201..66785226,-!p3@Shox2!0.93!7.42!Shox2;;chr1:140739014..140739032,-!p1@Lhx9!0.92!9.54!Lhx9;;chr11:96153767..96153822,+!p1@Hoxb6!0.91!11.31!Hoxb6;;chr13:55932624..55932641,-!p2@Pitx1!0.89!6.71!Pitx1;;chr12:86940338..86940357,+!p1@Jdp2!0.88!68.55!Jdp2;;chr16:14705746..14705761,+!p4@Snai2!0.87!6.36!Snai2;;chr19:5423800..5423821,-!p5@Drap1!0.86!9.54!Drap1;;chr13:31898529..31898542,+!p5@Foxc1!0.85!7.42!Foxc1;;chr9:87626083..87626108,-!p1@Tbx18!0.84!13.78!Tbx18;;chr6:52163319..52163342,-!p1@Hoxa3!0.84!8.83!Hoxa3;;chr6:72185232..72185272,-!p1@Atoh8!0.83!17.67!Atoh8;;chr8:94325321..94325366,-!p1@Irx3!0.83!14.84!Irx3;;chr1:165243272..165243283,-!p6@Prrx1!0.83!7.07!Prrx1;;chr10:67000609..67000625,+!p1@Egr2!0.82!13.78!Egr2;;chr3:99057256..99057268,+!p3@Tbx15!0.82!5.65!Tbx15;;chr15:102839948..102839975,+!p3@Hoxc6!0.82!5.65!Hoxc6;;chr2:167363692..167363710,+!p1@Snai1!0.81!71.73!Snai1;;chr15:102797183..102797205,+!p4@Hoxc10!0.80!5.30!Hoxc10;;chr16:14705668..14705683,+!p3@Snai2!0.80!5.30!Snai2;;chr1:165243591..165243625,-!p2@Prrx1!0.79!8.13!Prrx1;;chr8:123640063..123640077,+!p1@Foxc2!0.78!9.54!Foxc2;;chr3:66785857..66785873,-!p1@Shox2!0.77!4.95!Shox2;;chr17:34784073..34784118,+!p2@Atf6b!0.75!20.49!Atf6b;;chr3:66785181..66785199,-!p2@Shox2!0.75!4.59!Shox2;;chr6:52190668..52190682,-!p3@Hoxa10!0.75!4.59!Hoxa10;;chr1:186556410..186556424,-!p1@Hlx!0.74!15.19!Hlx;;chr15:102087737..102087801,-!p3@Rarg!0.74!7.77!Rarg;;chr6:72185210..72185228,-!p3@Atoh8!0.73!7.77!Atoh8;;chr13:72101178..72101203,-!p1@Irx1!0.73!7.07!Irx1;;chr1:186556375..186556404,-!p3@Hlx!0.72!8.13!Hlx;;chr8:94881872..94881887,+!p2@Irx5!0.72!4.59!Irx5;;chr4:134676555..134676575,+!p2@Runx3!0.72!4.24!Runx3;;chr19:59534008..59534046,+!p7@Emx2!0.72!4.24!Emx2;;chr19:5424822..5424845,-!p3@Drap1!0.71!18.02!Drap1;;chr13:31717548..31717596,+!p1@Foxf2!0.71!8.83!Foxf2;;chr12:9581262..9581282,+!p1@Osr1!0.69!53.00!Osr1;;chr19:28754692..28754757,-!p1@Glis3!0.69!18.02!Glis3;;chr19:55816546..55816556,+!p3@Tcf7l2!0.69!16.61!Tcf7l2;;chr10:67375342..67375365,-!p3@Zfp365!0.69!3.89!Zfp365;;chr2:71367871..71367898,+!p1@Dlx1!0.69!3.89!Dlx1;;chr6:52176144..52176161,-!p2@Hoxa9!0.69!3.89!Hoxa9;;chr7:35904304..35904320,+!p1@Cebpa!0.68!88.69!Cebpa;;chr3:5218629..5218684,+!p1@Zfhx4!0.68!13.78!Zfhx4;;chr13:72766279..72766296,+!p2@Irx2!0.68!6.01!Irx2;;chr1:165243653..165243664,-!p4@Prrx1!0.68!5.65!Prrx1;;chr15:102076870..102076941,-!p1@Rarg!0.67!46.29!Rarg;;chr11:94981424..94981439,+!p1@Dlx3!0.67!4.24!Dlx3;;chr10:80889867..80889924,-!p1@Nfic!0.66!116.60!Nfic;;chr12:34642510..34642530,+!p1@Twist1!0.66!12.72!Twist1;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!0.66!5.30!Carhsp1;;chr15:102820964..102821006,+!p1@Hoxc8!0.66!3.53!Hoxc8;;chr12:120085700..120085711,+!p1@Sp8!0.66!3.53!Sp8;;chr15:102820946..102820961,+!p3@Hoxc8!0.66!3.53!Hoxc8;;chr19:5424768..5424811,-!p2@Drap1!0.65!77.38!Drap1;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+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=FF:0000404
 |fonse_cell_line_closure=FF:0000404
@@ Line 39: / Line 45: @@
 |is_a=EFO:0002091;;FF:0000488
 |is_obsolete=
-|name=ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6)
+|library_id=CNhs13324
+|library_id_phase_based=2:CNhs13324
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;12582
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;12582
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/ST2%2520%2528Mesenchymal%2520stem%2520cells%2529%2520cells%252c%2520medium%2520change%2520%2528without%2520induction%2529%252c%252000hr%252c%2520biol_rep3%2520%2528000hC6%2529.CNhs13324.12582-133I8.mm9.nobarcode.rdna.fa.gz
+|name=ST2 (Mesenchymal stem cells) cells, medium change (without induction)
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
 |profile_hcage=CNhs13324,LSID1021,release013,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,0.206608985662162,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.0604865691906947,0,0,0,0,0,0.540751926847053,0,0,0,0,0,0,0,-0.24455162463,0,0,0,0,0,-0.027543393338898,-0.0661618130246221,-0.256911889361113,-0.984211366477826,-0.269868638010351,0.382621804010162,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0.142314959707217,0.322979824281548,0,-0.0137840679941754,-0.177522387348331,-0.310650657339386,-0.158091042771083,-0.100090321582142,0,-0.0780086007519514,-0.098514232005992,-0.0978737409346135,0,0,-0.0575963448243672,-0.178397003737581,0.203432122257288,-0.0788315948399074,0,0,0,0,0,0,0.0469987527915884,0.0816414725903614,0.501094468188799,0,0,0.13140678169188,0,0
 |rna_box=133
 |rna_catalog_number=
@@ Line 57: / Line 75: @@
 |rna_sample_type=
 |rna_tube_id=133I8
-|rna_weight_ug=5.50
+|rna_weight_ug=5.5
 |sample_age=
+|sample_category=time courses
 |sample_cell_catalog=
 |sample_cell_line=ST2
@@ Line 77: / Line 96: @@
 |sample_strain=
 |sample_tissue=bone marrow
+|time=00hr
+|timecourse=MSC_to_adipocyte_(mouse),MSC_to_osteocyte_(mouse)
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:12582-133I8;search_select_hide=table117:12582-133I8
 }}

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FF:12582-133I8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:40, 4 June 2020

CNhs13324

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0