FF:12177-128I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005762 | ||
|ancestors_in_cell_lineage_facet= | |accession_numbers=CAGE;DRX008533;DRR009405;DRZ000830;DRZ002215;DRZ012180;DRZ013565 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0010053,FF:0000004,FF:0000281 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12177-128I8 | |id=FF:12177-128I8 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0000281 | ||
|is_obsolete= | |||
|library_id=CNhs11076 | |||
|library_id_phase_based=2:CNhs11076 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12177 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12177 | |||
|name=Whole blood (ribopure), donor090325, donation2 | |name=Whole blood (ribopure), donor090325, donation2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11076,LSID723,release008,COMPLETED | |profile_hcage=CNhs11076,LSID723,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.672306680986708,0,0,0,0,0,0.100403012064962,0.14963850419244,0.145137276416397,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195777035956804,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0.07481925209622,0,0,0,0,0,0,0.19580907095088,0,0,0,0,0,0,0,0,0.150335002039782,0,0,0,0.422499408609911,0,-0.0420707592735563,0.14963850419244,-0.0969923612426051,0,0,0.0522948769793428,0,0,0,0,0,0,0,0,0.14963850419244,0,0.14963850419244,0,0,0.349100046305231,0,0,0,0.219262846515188,0,0,0,0,0,0,-0.351473479598839,0,0,0,-0.0584468268118252,-0.136378150599649,0,0,0,0,0.0516031529547333,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.14963850419244,0.484531278151146,0,0,-0.000943669843337186,0,0,0 | |||
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| |||
|rna_box=128 | |rna_box=128 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=5.2698 | |rna_weight_ug=5.2698 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.69942978248504e-245!GO:0043227;membrane-bound organelle;8.58702852176868e-135!GO:0043231;intracellular membrane-bound organelle;1.38542432010204e-134!GO:0043226;organelle;1.27476166754601e-127!GO:0005737;cytoplasm;1.48287896076294e-127!GO:0043229;intracellular organelle;4.37344345147819e-127!GO:0044444;cytoplasmic part;9.80913609769619e-85!GO:0044422;organelle part;2.26520041208137e-75!GO:0044446;intracellular organelle part;5.9560166585401e-74!GO:0044237;cellular metabolic process;1.6730149846953e-68!GO:0032991;macromolecular complex;2.11260410746533e-67!GO:0043170;macromolecule metabolic process;2.19817796896872e-67!GO:0044238;primary metabolic process;4.44831335979872e-66!GO:0005634;nucleus;8.37836532339962e-62!GO:0005515;protein binding;3.25630356694378e-59!GO:0003723;RNA binding;1.04377078673345e-56!GO:0030529;ribonucleoprotein complex;3.24479497340669e-53!GO:0044428;nuclear part;1.31692330293302e-52!GO:0019538;protein metabolic process;3.93650801493812e-44!GO:0043233;organelle lumen;3.93650801493812e-44!GO:0031974;membrane-enclosed lumen;3.93650801493812e-44!GO:0033036;macromolecule localization;1.11348861457139e-42!GO:0015031;protein transport;1.12091276371943e-41!GO:0044267;cellular protein metabolic process;2.38862960892477e-41!GO:0044260;cellular macromolecule metabolic process;2.9394382596261e-41!GO:0045184;establishment of protein localization;4.44496990670657e-41!GO:0006412;translation;1.7848932774107e-40!GO:0043283;biopolymer metabolic process;3.357208655424e-40!GO:0008104;protein localization;7.66196177668459e-40!GO:0010467;gene expression;3.72544221600624e-36!GO:0005829;cytosol;1.19112748038192e-35!GO:0043234;protein complex;1.30748534150345e-35!GO:0006396;RNA processing;3.21209172681076e-35!GO:0016071;mRNA metabolic process;7.15269384145117e-34!GO:0005739;mitochondrion;2.03899520484233e-33!GO:0031981;nuclear lumen;4.82543667614048e-33!GO:0031090;organelle membrane;5.48060346812611e-31!GO:0009059;macromolecule biosynthetic process;9.84097026071461e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.83821483357136e-30!GO:0008380;RNA splicing;5.37513907038883e-29!GO:0006397;mRNA processing;6.46545289876174e-29!GO:0005840;ribosome;1.36269596261288e-28!GO:0031967;organelle envelope;1.19563143334053e-27!GO:0031975;envelope;2.3574808653521e-27!GO:0044249;cellular biosynthetic process;2.25354062126485e-26!GO:0009058;biosynthetic process;5.39475723648513e-26!GO:0006886;intracellular protein transport;9.04019040349832e-26!GO:0046907;intracellular transport;1.4242872842235e-25!GO:0003735;structural constituent of ribosome;3.01855329946675e-25!GO:0016043;cellular component organization and biogenesis;1.59932419813437e-24!GO:0044429;mitochondrial part;2.20939730848655e-24!GO:0044445;cytosolic part;2.07483812460595e-23!GO:0006915;apoptosis;2.46047447402304e-23!GO:0012501;programmed cell death;2.98625630591804e-23!GO:0033279;ribosomal subunit;3.20174433226195e-23!GO:0065003;macromolecular complex assembly;9.09779000538457e-23!GO:0005654;nucleoplasm;2.61718825152373e-22!GO:0008219;cell death;2.94000236669246e-22!GO:0016265;death;2.94000236669246e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.96662078886547e-21!GO:0005681;spliceosome;7.04678399815993e-21!GO:0000166;nucleotide binding;1.52936023063834e-20!GO:0051649;establishment of cellular localization;2.12186532316143e-20!GO:0051641;cellular localization;2.72939863876351e-20!GO:0022607;cellular component assembly;1.88123543055109e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.17722332816521e-19!GO:0003676;nucleic acid binding;1.21023231948986e-18!GO:0043412;biopolymer modification;6.340605403751e-18!GO:0044451;nucleoplasm part;6.38518210876666e-18!GO:0002376;immune system process;7.63511325366723e-18!GO:0005740;mitochondrial envelope;1.57839033460505e-17!GO:0006512;ubiquitin cycle;1.91433039298152e-17!GO:0008134;transcription factor binding;2.68059046836696e-17!GO:0016070;RNA metabolic process;4.31605060354362e-17!GO:0031966;mitochondrial membrane;7.51052388878237e-17!GO:0006119;oxidative phosphorylation;1.68329096972938e-16!GO:0042981;regulation of apoptosis;1.81745495909662e-16!GO:0044265;cellular macromolecule catabolic process;2.07751758663381e-16!GO:0006464;protein modification process;3.22833960429575e-16!GO:0043067;regulation of programmed cell death;3.7979908514595e-16!GO:0019866;organelle inner membrane;3.93906308344407e-16!GO:0032553;ribonucleotide binding;9.85657651003394e-16!GO:0032555;purine ribonucleotide binding;9.85657651003394e-16!GO:0016462;pyrophosphatase activity;1.60313686894745e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.60923703728285e-15!GO:0006259;DNA metabolic process;1.62585694626614e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.89804998424965e-15!GO:0016874;ligase activity;2.64440125165762e-15!GO:0017111;nucleoside-triphosphatase activity;3.86176315926843e-15!GO:0017076;purine nucleotide binding;6.46064074188826e-15!GO:0043687;post-translational protein modification;8.25008199592266e-15!GO:0022618;protein-RNA complex assembly;1.59344488953332e-14!GO:0006996;organelle organization and biogenesis;2.01831178655148e-14!GO:0005743;mitochondrial inner membrane;2.10561639996651e-14!GO:0016192;vesicle-mediated transport;2.39127986130533e-14!GO:0007243;protein kinase cascade;3.56640505761595e-14!GO:0006605;protein targeting;8.70113184276208e-14!GO:0006913;nucleocytoplasmic transport;8.70113184276208e-14!GO:0016604;nuclear body;1.03551953505948e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.9959459534725e-13!GO:0019941;modification-dependent protein catabolic process;2.03374753457254e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.03374753457254e-13!GO:0051169;nuclear transport;2.03572569099849e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.10759592875186e-13!GO:0044257;cellular protein catabolic process;4.88529114076058e-13!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.31454248226851e-13!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.06172583243362e-12!GO:0043285;biopolymer catabolic process;1.11569467100488e-12!GO:0015935;small ribosomal subunit;1.29031235253192e-12!GO:0005524;ATP binding;1.78348161889201e-12!GO:0006955;immune response;1.880016621945e-12!GO:0048770;pigment granule;2.67943194824222e-12!GO:0042470;melanosome;2.67943194824222e-12!GO:0032559;adenyl ribonucleotide binding;2.69054760834321e-12!GO:0050794;regulation of cellular process;3.81820941310114e-12!GO:0009057;macromolecule catabolic process;4.02568971639753e-12!GO:0006793;phosphorus metabolic process;6.60142024726295e-12!GO:0006796;phosphate metabolic process;6.60142024726295e-12!GO:0051246;regulation of protein metabolic process;8.68384854071603e-12!GO:0016607;nuclear speck;1.00395574416441e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.04183770498628e-11!GO:0007242;intracellular signaling cascade;1.06515727020762e-11!GO:0008135;translation factor activity, nucleic acid binding;1.35880308329928e-11!GO:0012505;endomembrane system;1.4464423020928e-11!GO:0005794;Golgi apparatus;1.62232135085255e-11!GO:0015934;large ribosomal subunit;1.864071881229e-11!GO:0030554;adenyl nucleotide binding;2.03827980200975e-11!GO:0044248;cellular catabolic process;2.60027895864478e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.40381214135741e-11!GO:0016310;phosphorylation;3.80088789774261e-11!GO:0005635;nuclear envelope;4.21335442068914e-11!GO:0044455;mitochondrial membrane part;7.02588298255394e-11!GO:0051186;cofactor metabolic process;8.07091229694221e-11!GO:0005730;nucleolus;1.02263717108436e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.33224033602916e-10!GO:0000375;RNA splicing, via transesterification reactions;1.33224033602916e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.33224033602916e-10!GO:0003712;transcription cofactor activity;1.3857352007866e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.49522232537362e-10!GO:0008639;small protein conjugating enzyme activity;2.05480898549046e-10!GO:0006457;protein folding;2.44499954506493e-10!GO:0005768;endosome;3.19159641180228e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.80091126573343e-10!GO:0004842;ubiquitin-protein ligase activity;4.02488081229122e-10!GO:0005746;mitochondrial respiratory chain;5.24630985733113e-10!GO:0019787;small conjugating protein ligase activity;8.8851402139663e-10!GO:0043228;non-membrane-bound organelle;1.36369545127778e-09!GO:0043232;intracellular non-membrane-bound organelle;1.36369545127778e-09!GO:0005773;vacuole;1.38743311993172e-09!GO:0031980;mitochondrial lumen;1.40241633253482e-09!GO:0005759;mitochondrial matrix;1.40241633253482e-09!GO:0043069;negative regulation of programmed cell death;1.42130323769873e-09!GO:0048193;Golgi vesicle transport;1.48537272076767e-09!GO:0050136;NADH dehydrogenase (quinone) activity;1.81862360974585e-09!GO:0003954;NADH dehydrogenase activity;1.81862360974585e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.81862360974585e-09!GO:0043066;negative regulation of apoptosis;2.03713655894247e-09!GO:0003743;translation initiation factor activity;2.42432906197774e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.5152316597021e-09!GO:0016887;ATPase activity;3.96912990045676e-09!GO:0017038;protein import;4.37005544964498e-09!GO:0006916;anti-apoptosis;4.62605517517312e-09!GO:0031965;nuclear membrane;4.62605517517312e-09!GO:0030163;protein catabolic process;4.73258845078732e-09!GO:0065009;regulation of a molecular function;4.78910816201507e-09!GO:0006413;translational initiation;6.24269431834649e-09!GO:0050789;regulation of biological process;6.28057846133172e-09!GO:0006446;regulation of translational initiation;6.28057846133172e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.48153470104838e-09!GO:0042623;ATPase activity, coupled;1.00690845575755e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.08836842739676e-08!GO:0000323;lytic vacuole;1.22098460035409e-08!GO:0005764;lysosome;1.22098460035409e-08!GO:0048523;negative regulation of cellular process;1.32458574934085e-08!GO:0045321;leukocyte activation;1.56436272220531e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.99423542999147e-08!GO:0042773;ATP synthesis coupled electron transport;1.99423542999147e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.2312692579578e-08!GO:0009259;ribonucleotide metabolic process;2.28993199780116e-08!GO:0019829;cation-transporting ATPase activity;2.63002879728501e-08!GO:0006974;response to DNA damage stimulus;2.70596468631879e-08!GO:0006323;DNA packaging;3.68277633350527e-08!GO:0009150;purine ribonucleotide metabolic process;4.03508556781432e-08!GO:0006950;response to stress;4.03508556781432e-08!GO:0030964;NADH dehydrogenase complex (quinone);4.53618887703863e-08!GO:0045271;respiratory chain complex I;4.53618887703863e-08!GO:0005747;mitochondrial respiratory chain complex I;4.53618887703863e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.71158503484876e-08!GO:0006163;purine nucleotide metabolic process;4.89533651894855e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.4706457367576e-08!GO:0051170;nuclear import;5.61361357224959e-08!GO:0051082;unfolded protein binding;7.37203698720738e-08!GO:0019222;regulation of metabolic process;7.57036921265148e-08!GO:0006366;transcription from RNA polymerase II promoter;7.59696417322974e-08!GO:0006417;regulation of translation;7.61986138350955e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.72513123729121e-08!GO:0006606;protein import into nucleus;8.13075106725588e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.05381652878197e-07!GO:0003713;transcription coactivator activity;1.09162378443365e-07!GO:0016881;acid-amino acid ligase activity;1.10361301755489e-07!GO:0001775;cell activation;1.2060305010801e-07!GO:0005770;late endosome;1.27258200831996e-07!GO:0016568;chromatin modification;1.27520797230053e-07!GO:0006164;purine nucleotide biosynthetic process;1.35810719069e-07!GO:0015986;ATP synthesis coupled proton transport;1.38009456752929e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.38009456752929e-07!GO:0046649;lymphocyte activation;1.42733563811262e-07!GO:0006732;coenzyme metabolic process;1.66559869018101e-07!GO:0009260;ribonucleotide biosynthetic process;1.78010398150658e-07!GO:0016787;hydrolase activity;2.04888049900871e-07!GO:0043065;positive regulation of apoptosis;2.09999467990473e-07!GO:0044453;nuclear membrane part;2.50201759460434e-07!GO:0005783;endoplasmic reticulum;2.9947052007459e-07!GO:0048519;negative regulation of biological process;3.17606214576185e-07!GO:0065007;biological regulation;3.36705017077049e-07!GO:0043068;positive regulation of programmed cell death;3.80731301793723e-07!GO:0004386;helicase activity;3.85261869175764e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.62738191913416e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.62738191913416e-07!GO:0051276;chromosome organization and biogenesis;5.27300514115299e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.38666471314663e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.61432570173652e-07!GO:0019899;enzyme binding;6.85891438022725e-07!GO:0008026;ATP-dependent helicase activity;7.40109690551753e-07!GO:0009615;response to virus;7.55798436351972e-07!GO:0001772;immunological synapse;8.2741073307035e-07!GO:0050657;nucleic acid transport;9.89199898564578e-07!GO:0051236;establishment of RNA localization;9.89199898564578e-07!GO:0050658;RNA transport;9.89199898564578e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.89199898564578e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.89199898564578e-07!GO:0008565;protein transporter activity;1.07503908914315e-06!GO:0046034;ATP metabolic process;1.09018720790401e-06!GO:0031326;regulation of cellular biosynthetic process;1.12442639962745e-06!GO:0006917;induction of apoptosis;1.12893447612043e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.17296699709676e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.17414098197628e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.17414098197628e-06!GO:0009141;nucleoside triphosphate metabolic process;1.2043502917701e-06!GO:0009967;positive regulation of signal transduction;1.31310978010021e-06!GO:0006403;RNA localization;1.34350444909255e-06!GO:0002764;immune response-regulating signal transduction;1.34714673079907e-06!GO:0044440;endosomal part;1.39946212624061e-06!GO:0010008;endosome membrane;1.39946212624061e-06!GO:0051188;cofactor biosynthetic process;1.78109573698652e-06!GO:0006754;ATP biosynthetic process;1.78109573698652e-06!GO:0006753;nucleoside phosphate metabolic process;1.78109573698652e-06!GO:0006281;DNA repair;1.7978050266514e-06!GO:0012502;induction of programmed cell death;1.81289298114804e-06!GO:0006461;protein complex assembly;1.86642827553512e-06!GO:0032446;protein modification by small protein conjugation;1.94244076182767e-06!GO:0043566;structure-specific DNA binding;2.47824297441602e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.48266388103345e-06!GO:0002757;immune response-activating signal transduction;2.63258675230896e-06!GO:0007264;small GTPase mediated signal transduction;2.71791496433304e-06!GO:0008632;apoptotic program;2.862855031997e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.862855031997e-06!GO:0005643;nuclear pore;3.04223651506502e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.28440651886448e-06!GO:0060090;molecular adaptor activity;3.29264590455894e-06!GO:0016567;protein ubiquitination;3.71449615709577e-06!GO:0002768;immune response-regulating cell surface receptor signaling pathway;3.85467717442941e-06!GO:0048522;positive regulation of cellular process;4.02034710949086e-06!GO:0003924;GTPase activity;4.53901899775954e-06!GO:0016563;transcription activator activity;4.56906094311139e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.77280849962275e-06!GO:0007049;cell cycle;5.09970063915379e-06!GO:0009889;regulation of biosynthetic process;5.68752220024256e-06!GO:0009056;catabolic process;6.99135786019262e-06!GO:0005774;vacuolar membrane;7.26976924131766e-06!GO:0042254;ribosome biogenesis and assembly;7.40502062792895e-06!GO:0002429;immune response-activating cell surface receptor signaling pathway;7.68096872253584e-06!GO:0005793;ER-Golgi intermediate compartment;7.68096872253584e-06!GO:0005761;mitochondrial ribosome;8.97289893149552e-06!GO:0000313;organellar ribosome;8.97289893149552e-06!GO:0050790;regulation of catalytic activity;9.39710076776902e-06!GO:0031323;regulation of cellular metabolic process;9.96609804560098e-06!GO:0005525;GTP binding;1.07352152323673e-05!GO:0000151;ubiquitin ligase complex;1.15478423338017e-05!GO:0042110;T cell activation;1.28918768350376e-05!GO:0051028;mRNA transport;1.39132797068605e-05!GO:0048518;positive regulation of biological process;1.41855841146809e-05!GO:0016740;transferase activity;1.78147050419079e-05!GO:0008047;enzyme activator activity;1.80873910653983e-05!GO:0048475;coated membrane;1.93875358919128e-05!GO:0030117;membrane coat;1.93875358919128e-05!GO:0004298;threonine endopeptidase activity;1.94630698217485e-05!GO:0009117;nucleotide metabolic process;2.00333407856571e-05!GO:0065004;protein-DNA complex assembly;2.00876670040647e-05!GO:0009060;aerobic respiration;2.08690080386785e-05!GO:0030097;hemopoiesis;2.16799368023751e-05!GO:0044432;endoplasmic reticulum part;2.29060578080467e-05!GO:0005765;lysosomal membrane;2.52333752168479e-05!GO:0051726;regulation of cell cycle;2.94018502821781e-05!GO:0044437;vacuolar part;3.04842905102092e-05!GO:0000074;regulation of progression through cell cycle;3.07251544405855e-05!GO:0000245;spliceosome assembly;3.21025748667213e-05!GO:0006401;RNA catabolic process;3.3093431836645e-05!GO:0003697;single-stranded DNA binding;3.4168197921585e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.50602507068066e-05!GO:0030120;vesicle coat;3.87854860962293e-05!GO:0030662;coated vesicle membrane;3.87854860962293e-05!GO:0046930;pore complex;4.3228711190288e-05!GO:0030532;small nuclear ribonucleoprotein complex;4.3228711190288e-05!GO:0004674;protein serine/threonine kinase activity;4.69270639529398e-05!GO:0016197;endosome transport;5.16086501187931e-05!GO:0031902;late endosome membrane;5.17885509668244e-05!GO:0006333;chromatin assembly or disassembly;5.5116073489802e-05!GO:0006613;cotranslational protein targeting to membrane;5.76641672290272e-05!GO:0009719;response to endogenous stimulus;5.80670168504728e-05!GO:0051168;nuclear export;5.98743384333362e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.02343130783614e-05!GO:0031324;negative regulation of cellular metabolic process;6.02648068644859e-05!GO:0065002;intracellular protein transport across a membrane;6.3990585783231e-05!GO:0009055;electron carrier activity;7.03365655384588e-05!GO:0045259;proton-transporting ATP synthase complex;7.33444587834022e-05!GO:0016564;transcription repressor activity;7.3446728067617e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.57328038892062e-05!GO:0009892;negative regulation of metabolic process;8.6631209576738e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.70633617004027e-05!GO:0044431;Golgi apparatus part;8.73290791460615e-05!GO:0051251;positive regulation of lymphocyte activation;9.39858429169176e-05!GO:0007265;Ras protein signal transduction;9.52533603343994e-05!GO:0032940;secretion by cell;9.52573442289947e-05!GO:0032561;guanyl ribonucleotide binding;9.69449423296922e-05!GO:0019001;guanyl nucleotide binding;9.69449423296922e-05!GO:0031252;leading edge;9.69449423296922e-05!GO:0045786;negative regulation of progression through cell cycle;9.75603210903364e-05!GO:0005070;SH3/SH2 adaptor activity;0.000100556138260219!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000102297631696244!GO:0030695;GTPase regulator activity;0.000102297631696244!GO:0009108;coenzyme biosynthetic process;0.000103028796314123!GO:0006752;group transfer coenzyme metabolic process;0.000114444485222729!GO:0003724;RNA helicase activity;0.000115889080149595!GO:0042101;T cell receptor complex;0.000116500328408321!GO:0008270;zinc ion binding;0.000124597757127844!GO:0002520;immune system development;0.000147773965317351!GO:0051336;regulation of hydrolase activity;0.000171435506060023!GO:0050851;antigen receptor-mediated signaling pathway;0.000171843152276464!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000172259990395089!GO:0009966;regulation of signal transduction;0.000172259990395089!GO:0001816;cytokine production;0.00017241227775211!GO:0010468;regulation of gene expression;0.00017547857309118!GO:0005885;Arp2/3 protein complex;0.000201312733368104!GO:0005789;endoplasmic reticulum membrane;0.000202920818905266!GO:0030218;erythrocyte differentiation;0.000203712211586856!GO:0045333;cellular respiration;0.000205184141742985!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000284496946781627!GO:0015399;primary active transmembrane transporter activity;0.000284496946781627!GO:0006402;mRNA catabolic process;0.000285092181397475!GO:0006099;tricarboxylic acid cycle;0.000294653811726881!GO:0046356;acetyl-CoA catabolic process;0.000294653811726881!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00031906392644439!GO:0004812;aminoacyl-tRNA ligase activity;0.00031906392644439!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00031906392644439!GO:0031982;vesicle;0.000325695355261666!GO:0006612;protein targeting to membrane;0.000343089295461475!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000389774411176503!GO:0008654;phospholipid biosynthetic process;0.000425768687165283!GO:0016044;membrane organization and biogenesis;0.000426368325303479!GO:0006399;tRNA metabolic process;0.000465166633354317!GO:0016072;rRNA metabolic process;0.000467720528626163!GO:0016481;negative regulation of transcription;0.000475907796709085!GO:0042113;B cell activation;0.000490104941138087!GO:0005057;receptor signaling protein activity;0.000504772288388409!GO:0043038;amino acid activation;0.000528960534548505!GO:0006418;tRNA aminoacylation for protein translation;0.000528960534548505!GO:0043039;tRNA aminoacylation;0.000528960534548505!GO:0046914;transition metal ion binding;0.000532052392644484!GO:0006364;rRNA processing;0.000557502117307845!GO:0006650;glycerophospholipid metabolic process;0.000620011416544407!GO:0006084;acetyl-CoA metabolic process;0.000663989450922304!GO:0051427;hormone receptor binding;0.000696699501791186!GO:0018193;peptidyl-amino acid modification;0.000696699501791186!GO:0016779;nucleotidyltransferase activity;0.000711769128760646!GO:0030099;myeloid cell differentiation;0.00072432630001451!GO:0005096;GTPase activator activity;0.000730376481449452!GO:0043492;ATPase activity, coupled to movement of substances;0.000750955019652595!GO:0006350;transcription;0.000775293819538228!GO:0045045;secretory pathway;0.000778819395598872!GO:0000785;chromatin;0.000797127348301646!GO:0016301;kinase activity;0.000800313628683469!GO:0046822;regulation of nucleocytoplasmic transport;0.000867801607851907!GO:0005798;Golgi-associated vesicle;0.000884206132302524!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000917581311141511!GO:0008186;RNA-dependent ATPase activity;0.000917581311141511!GO:0048534;hemopoietic or lymphoid organ development;0.000946090587240035!GO:0051187;cofactor catabolic process;0.000951410069124926!GO:0009607;response to biotic stimulus;0.000951410069124926!GO:0003690;double-stranded DNA binding;0.000990482922946293!GO:0030384;phosphoinositide metabolic process;0.00101869848667534!GO:0005083;small GTPase regulator activity;0.00101977197749343!GO:0022402;cell cycle process;0.0010769848307482!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00107764125586513!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00116726670607297!GO:0031410;cytoplasmic vesicle;0.00116884866987324!GO:0006919;caspase activation;0.00116884866987324!GO:0007034;vacuolar transport;0.00119287974856842!GO:0035257;nuclear hormone receptor binding;0.00120247556680314!GO:0005769;early endosome;0.00120679857995965!GO:0003714;transcription corepressor activity;0.00121710203884421!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00124925639533957!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00138471777554299!GO:0005741;mitochondrial outer membrane;0.00139316619492635!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.001524132072879!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00165447177934232!GO:0005694;chromosome;0.00169558576198658!GO:0030041;actin filament polymerization;0.00178998611192717!GO:0009109;coenzyme catabolic process;0.00180379149649688!GO:0016363;nuclear matrix;0.00181956759982881!GO:0000139;Golgi membrane;0.00190190480383218!GO:0008234;cysteine-type peptidase activity;0.00191807332008712!GO:0005813;centrosome;0.00200543755204837!GO:0002443;leukocyte mediated immunity;0.00200543755204837!GO:0006891;intra-Golgi vesicle-mediated transport;0.00208674810693511!GO:0002252;immune effector process;0.00215407250587266!GO:0006468;protein amino acid phosphorylation;0.00216723207401023!GO:0006611;protein export from nucleus;0.00219518520009496!GO:0022890;inorganic cation transmembrane transporter activity;0.00220044925512054!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00222093178228092!GO:0051223;regulation of protein transport;0.00225231815941965!GO:0015992;proton transport;0.00227939008384343!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.00231373885582078!GO:0005667;transcription factor complex;0.0023312508513267!GO:0007005;mitochondrion organization and biogenesis;0.0023312508513267!GO:0043280;positive regulation of caspase activity;0.00247343428224605!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00247440893562219!GO:0006818;hydrogen transport;0.00247928138249605!GO:0051090;regulation of transcription factor activity;0.00251897035595681!GO:0004004;ATP-dependent RNA helicase activity;0.00255166328963292!GO:0008624;induction of apoptosis by extracellular signals;0.00259969051919257!GO:0031988;membrane-bound vesicle;0.00266797571989634!GO:0019867;outer membrane;0.00280768615361563!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00288772724940376!GO:0043281;regulation of caspase activity;0.00289122925635217!GO:0050871;positive regulation of B cell activation;0.00290907896473586!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0030008770203931!GO:0030118;clathrin coat;0.00323608973950816!GO:0031968;organelle outer membrane;0.00328574626005116!GO:0044427;chromosomal part;0.00338775079323921!GO:0048468;cell development;0.00342971290434215!GO:0006643;membrane lipid metabolic process;0.00349052716557411!GO:0050870;positive regulation of T cell activation;0.00362682557289439!GO:0003725;double-stranded RNA binding;0.00376448711879299!GO:0042287;MHC protein binding;0.0038144715098019!GO:0001819;positive regulation of cytokine production;0.00392942849592664!GO:0030036;actin cytoskeleton organization and biogenesis;0.00394281153798193!GO:0003729;mRNA binding;0.0039665666021689!GO:0043623;cellular protein complex assembly;0.00396767259227101!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00409930189110316!GO:0050865;regulation of cell activation;0.00428802889235679!GO:0001726;ruffle;0.00436972118673573!GO:0006968;cellular defense response;0.00465680774441677!GO:0006334;nucleosome assembly;0.00465739528339948!GO:0051249;regulation of lymphocyte activation;0.00472198983265845!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00487161084225974!GO:0022415;viral reproductive process;0.00497768808937084!GO:0043087;regulation of GTPase activity;0.00498551155355105!GO:0043021;ribonucleoprotein binding;0.00505869526700854!GO:0001817;regulation of cytokine production;0.00524944203299624!GO:0002521;leukocyte differentiation;0.00525624798594345!GO:0051092;activation of NF-kappaB transcription factor;0.00525624798594345!GO:0031497;chromatin assembly;0.00539277755059081!GO:0005815;microtubule organizing center;0.00559741105269569!GO:0006260;DNA replication;0.00569375186083145!GO:0048471;perinuclear region of cytoplasm;0.00574546350118698!GO:0008154;actin polymerization and/or depolymerization;0.00580754658496517!GO:0016023;cytoplasmic membrane-bound vesicle;0.00580754658496517!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00617499993181356!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00617499993181356!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00617499993181356!GO:0048250;mitochondrial iron ion transport;0.00623369814071344!GO:0002274;myeloid leukocyte activation;0.00624695755884074!GO:0047485;protein N-terminus binding;0.00663556324923589!GO:0050811;GABA receptor binding;0.00684495292329812!GO:0000287;magnesium ion binding;0.00689546586178727!GO:0007041;lysosomal transport;0.0069780341166455!GO:0051252;regulation of RNA metabolic process;0.00714039408385248!GO:0016505;apoptotic protease activator activity;0.00736022435216331!GO:0045576;mast cell activation;0.00746355902260982!GO:0001516;prostaglandin biosynthetic process;0.00753727212082008!GO:0046457;prostanoid biosynthetic process;0.00753727212082008!GO:0030658;transport vesicle membrane;0.00779639502775191!GO:0046489;phosphoinositide biosynthetic process;0.00780094927422998!GO:0019883;antigen processing and presentation of endogenous antigen;0.00828173822522478!GO:0030867;rough endoplasmic reticulum membrane;0.00837429653701072!GO:0002440;production of molecular mediator of immune response;0.00849751316649841!GO:0005637;nuclear inner membrane;0.00850608541431021!GO:0033157;regulation of intracellular protein transport;0.00873547876583424!GO:0042306;regulation of protein import into nucleus;0.00873547876583424!GO:0016791;phosphoric monoester hydrolase activity;0.00879654068449043!GO:0042613;MHC class II protein complex;0.0089114177296423!GO:0042802;identical protein binding;0.00901428923722255!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00907374238381974!GO:0019904;protein domain specific binding;0.00912543498412351!GO:0008637;apoptotic mitochondrial changes;0.00930719903785475!GO:0046474;glycerophospholipid biosynthetic process;0.00933738253192663!GO:0030518;steroid hormone receptor signaling pathway;0.00935446296930412!GO:0043299;leukocyte degranulation;0.00943321595832612!GO:0031072;heat shock protein binding;0.0095685232519395!GO:0006352;transcription initiation;0.00958144118615573!GO:0033116;ER-Golgi intermediate compartment membrane;0.009608385540707!GO:0051920;peroxiredoxin activity;0.0098073609855817!GO:0006310;DNA recombination;0.00982876595907813!GO:0046467;membrane lipid biosynthetic process;0.0102262820494398!GO:0006607;NLS-bearing substrate import into nucleus;0.0103868443568349!GO:0043300;regulation of leukocyte degranulation;0.0103868443568349!GO:0048500;signal recognition particle;0.0107730051943713!GO:0045454;cell redox homeostasis;0.0111111257208117!GO:0045058;T cell selection;0.0114416774964723!GO:0007050;cell cycle arrest;0.0115445945562343!GO:0016251;general RNA polymerase II transcription factor activity;0.0116517272336992!GO:0009165;nucleotide biosynthetic process;0.011842406382482!GO:0030258;lipid modification;0.0121927841838899!GO:0006778;porphyrin metabolic process;0.0121927841838899!GO:0033013;tetrapyrrole metabolic process;0.0121927841838899!GO:0046456;icosanoid biosynthetic process;0.0123780256258592!GO:0004185;serine carboxypeptidase activity;0.0128372843584196!GO:0045892;negative regulation of transcription, DNA-dependent;0.0128939396470657!GO:0051338;regulation of transferase activity;0.0130251954588695!GO:0030131;clathrin adaptor complex;0.0130251954588695!GO:0004722;protein serine/threonine phosphatase activity;0.0130251954588695!GO:0005791;rough endoplasmic reticulum;0.0130251954588695!GO:0051098;regulation of binding;0.0130831938413371!GO:0050853;B cell receptor signaling pathway;0.013170138176853!GO:0016584;nucleosome positioning;0.0132626390802157!GO:0006914;autophagy;0.0133888808909519!GO:0045449;regulation of transcription;0.0134830828224621!GO:0043506;regulation of JNK activity;0.0135051820999275!GO:0030119;AP-type membrane coat adaptor complex;0.0135235816661691!GO:0005521;lamin binding;0.0135489584325106!GO:0030521;androgen receptor signaling pathway;0.0137720988229697!GO:0002449;lymphocyte mediated immunity;0.0138170617815979!GO:0042168;heme metabolic process;0.0138515480862985!GO:0050857;positive regulation of antigen receptor-mediated signaling pathway;0.014606355595152!GO:0006644;phospholipid metabolic process;0.0146456537790223!GO:0043488;regulation of mRNA stability;0.0146727030023833!GO:0043487;regulation of RNA stability;0.0146727030023833!GO:0019843;rRNA binding;0.014680894833905!GO:0043549;regulation of kinase activity;0.014818723400715!GO:0008287;protein serine/threonine phosphatase complex;0.0153209014207939!GO:0032774;RNA biosynthetic process;0.0155539003163503!GO:0002682;regulation of immune system process;0.0158581868475823!GO:0046983;protein dimerization activity;0.0159162752715275!GO:0006897;endocytosis;0.0164887509651466!GO:0010324;membrane invagination;0.0164887509651466!GO:0006351;transcription, DNA-dependent;0.0165735147427767!GO:0006740;NADPH regeneration;0.0167169161786643!GO:0006098;pentose-phosphate shunt;0.0167169161786643!GO:0051345;positive regulation of hydrolase activity;0.0168871483562553!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0168871483562553!GO:0045047;protein targeting to ER;0.0168871483562553!GO:0048002;antigen processing and presentation of peptide antigen;0.0174870743623252!GO:0050863;regulation of T cell activation;0.0174895660072768!GO:0006213;pyrimidine nucleoside metabolic process;0.0178199139169558!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0179799453662251!GO:0002819;regulation of adaptive immune response;0.0179799453662251!GO:0008656;caspase activator activity;0.0180637194970626!GO:0031625;ubiquitin protein ligase binding;0.0181264344148203!GO:0000209;protein polyubiquitination;0.0181795434072262!GO:0030660;Golgi-associated vesicle membrane;0.0184044939294151!GO:0044262;cellular carbohydrate metabolic process;0.0186495427456077!GO:0002250;adaptive immune response;0.0188574323225535!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0188574323225535!GO:0008312;7S RNA binding;0.0191076699999442!GO:0009893;positive regulation of metabolic process;0.019113397772131!GO:0046966;thyroid hormone receptor binding;0.0192079854367061!GO:0043085;positive regulation of catalytic activity;0.0192437617864161!GO:0048487;beta-tubulin binding;0.0198772547798968!GO:0051707;response to other organism;0.0201006097574369!GO:0051789;response to protein stimulus;0.0204275020125734!GO:0006986;response to unfolded protein;0.0204275020125734!GO:0042990;regulation of transcription factor import into nucleus;0.0204342119570031!GO:0042991;transcription factor import into nucleus;0.0204342119570031!GO:0030674;protein binding, bridging;0.0210765876913495!GO:0005762;mitochondrial large ribosomal subunit;0.0210765876913495!GO:0000315;organellar large ribosomal subunit;0.0210765876913495!GO:0002253;activation of immune response;0.0210765876913495!GO:0033367;protein localization in mast cell secretory granule;0.0210765876913495!GO:0033365;protein localization in organelle;0.0210765876913495!GO:0033371;T cell secretory granule organization and biogenesis;0.0210765876913495!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0210765876913495!GO:0033375;protease localization in T cell secretory granule;0.0210765876913495!GO:0042629;mast cell granule;0.0210765876913495!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0210765876913495!GO:0033364;mast cell secretory granule organization and biogenesis;0.0210765876913495!GO:0033380;granzyme B localization in T cell secretory granule;0.0210765876913495!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0210765876913495!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0210765876913495!GO:0033368;protease localization in mast cell secretory granule;0.0210765876913495!GO:0033366;protein localization in secretory granule;0.0210765876913495!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0210765876913495!GO:0033374;protein localization in T cell secretory granule;0.0210765876913495!GO:0015923;mannosidase activity;0.0212096710768474!GO:0051091;positive regulation of transcription factor activity;0.0218879471639314!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0218924694502955!GO:0006779;porphyrin biosynthetic process;0.0218924694502955!GO:0033014;tetrapyrrole biosynthetic process;0.0218924694502955!GO:0042288;MHC class I protein binding;0.0222177367491213!GO:0002448;mast cell mediated immunity;0.0224632882357611!GO:0043303;mast cell degranulation;0.0224632882357611!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0227778699972437!GO:0030133;transport vesicle;0.0228071774370415!GO:0006595;polyamine metabolic process;0.0228071774370415!GO:0006376;mRNA splice site selection;0.0228564056437966!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0228564056437966!GO:0007259;JAK-STAT cascade;0.0229298259646277!GO:0019955;cytokine binding;0.0229475273088974!GO:0002444;myeloid leukocyte mediated immunity;0.023232400907834!GO:0005099;Ras GTPase activator activity;0.0236151261325275!GO:0045859;regulation of protein kinase activity;0.0239270377355131!GO:0006783;heme biosynthetic process;0.0240310623213787!GO:0030217;T cell differentiation;0.0241098397044304!GO:0006414;translational elongation;0.02411130008117!GO:0051049;regulation of transport;0.0246009986721456!GO:0030098;lymphocyte differentiation;0.0247463138540721!GO:0005669;transcription factor TFIID complex;0.0247463138540721!GO:0045309;protein phosphorylated amino acid binding;0.0248035033878953!GO:0030027;lamellipodium;0.024863005533122!GO:0000118;histone deacetylase complex;0.0249783160212743!GO:0019865;immunoglobulin binding;0.0250054533910544!GO:0030029;actin filament-based process;0.0250054533910544!GO:0004197;cysteine-type endopeptidase activity;0.0250091245899102!GO:0043304;regulation of mast cell degranulation;0.0250614941680673!GO:0043028;caspase regulator activity;0.0252102630647117!GO:0019079;viral genome replication;0.0254596834792178!GO:0031901;early endosome membrane;0.0266169054979698!GO:0001836;release of cytochrome c from mitochondria;0.0269304843163668!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0270564386924308!GO:0030176;integral to endoplasmic reticulum membrane;0.0274197124428007!GO:0015631;tubulin binding;0.0274210350983378!GO:0009116;nucleoside metabolic process;0.0274687290365252!GO:0006672;ceramide metabolic process;0.0276881723276052!GO:0046979;TAP2 binding;0.0279744309850412!GO:0046977;TAP binding;0.0279744309850412!GO:0046978;TAP1 binding;0.0279744309850412!GO:0019882;antigen processing and presentation;0.0279744309850412!GO:0006405;RNA export from nucleus;0.028137842063335!GO:0030833;regulation of actin filament polymerization;0.0281744944558662!GO:0032318;regulation of Ras GTPase activity;0.0282090876132853!GO:0043235;receptor complex;0.0283183546720183!GO:0015036;disulfide oxidoreductase activity;0.0286805931833875!GO:0009897;external side of plasma membrane;0.0286805931833875!GO:0019864;IgG binding;0.0291070934195454!GO:0042108;positive regulation of cytokine biosynthetic process;0.0295926586096608!GO:0006383;transcription from RNA polymerase III promoter;0.0297771817240018!GO:0050776;regulation of immune response;0.0297791824450416!GO:0006007;glucose catabolic process;0.0297791824450416!GO:0030522;intracellular receptor-mediated signaling pathway;0.0299493941760788!GO:0019318;hexose metabolic process;0.0302678115085355!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0302678115085355!GO:0045653;negative regulation of megakaryocyte differentiation;0.0303699591235585!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0304234580300021!GO:0005048;signal sequence binding;0.0306628953587921!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0306628953587921!GO:0045637;regulation of myeloid cell differentiation;0.0306923137657279!GO:0051087;chaperone binding;0.0306923137657279!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0306923137657279!GO:0006497;protein amino acid lipidation;0.0307196438727778!GO:0051235;maintenance of localization;0.0307235744126382!GO:0003746;translation elongation factor activity;0.0308766745845086!GO:0030663;COPI coated vesicle membrane;0.0313590837738953!GO:0030126;COPI vesicle coat;0.0313590837738953!GO:0046519;sphingoid metabolic process;0.0318457153289779!GO:0032763;regulation of mast cell cytokine production;0.0321411422988179!GO:0032762;mast cell cytokine production;0.0321411422988179!GO:0019863;IgE binding;0.0321839023148154!GO:0030137;COPI-coated vesicle;0.0335421615858694!GO:0016853;isomerase activity;0.0339647101617328!GO:0007040;lysosome organization and biogenesis;0.0342471496942417!GO:0016504;protease activator activity;0.0346832183876598!GO:0005684;U2-dependent spliceosome;0.0350499360229956!GO:0003711;transcription elongation regulator activity;0.0350845704061718!GO:0000303;response to superoxide;0.0351323862316407!GO:0030125;clathrin vesicle coat;0.0351328505053037!GO:0030665;clathrin coated vesicle membrane;0.0351328505053037!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0353767930270709!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0353767930270709!GO:0008333;endosome to lysosome transport;0.0353767930270709!GO:0001784;phosphotyrosine binding;0.035441230450449!GO:0002467;germinal center formation;0.0358664052514849!GO:0005996;monosaccharide metabolic process;0.0360747993999436!GO:0043681;protein import into mitochondrion;0.0362543356031065!GO:0046824;positive regulation of nucleocytoplasmic transport;0.036525079828633!GO:0031294;lymphocyte costimulation;0.036525079828633!GO:0031295;T cell costimulation;0.036525079828633!GO:0002684;positive regulation of immune system process;0.0380543475278433!GO:0002218;activation of innate immune response;0.0382644322850157!GO:0002758;innate immune response-activating signal transduction;0.0382644322850157!GO:0050854;regulation of antigen receptor-mediated signaling pathway;0.0387564573163101!GO:0032760;positive regulation of tumor necrosis factor production;0.0387953999213207!GO:0030132;clathrin coat of coated pit;0.0391717485408767!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0391990343564141!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0391990343564141!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0393904980308525!GO:0008383;manganese superoxide dismutase activity;0.0399888522480303!GO:0001315;age-dependent response to reactive oxygen species;0.0399888522480303!GO:0017166;vinculin binding;0.0402368679527013!GO:0042608;T cell receptor binding;0.0402751477567115!GO:0004982;N-formyl peptide receptor activity;0.0408656507282784!GO:0048872;homeostasis of number of cells;0.0409449949049307!GO:0007006;mitochondrial membrane organization and biogenesis;0.041198770552221!GO:0050671;positive regulation of lymphocyte proliferation;0.0418803429352983!GO:0032946;positive regulation of mononuclear cell proliferation;0.0418803429352983!GO:0003899;DNA-directed RNA polymerase activity;0.0422687459036787!GO:0006289;nucleotide-excision repair;0.0423994971294894!GO:0006904;vesicle docking during exocytosis;0.0426533468855165!GO:0035258;steroid hormone receptor binding;0.0429771618028344!GO:0022406;membrane docking;0.0437469446513055!GO:0048278;vesicle docking;0.0437469446513055!GO:0051050;positive regulation of transport;0.0438099303543846!GO:0043621;protein self-association;0.0439187519318395!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0441476123243044!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0441655000555652!GO:0046483;heterocycle metabolic process;0.0441655000555652!GO:0032386;regulation of intracellular transport;0.0442700251465721!GO:0000278;mitotic cell cycle;0.0444822658069652!GO:0019058;viral infectious cycle;0.0444822658069652!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0445725672779584!GO:0008625;induction of apoptosis via death domain receptors;0.0445725672779584!GO:0006506;GPI anchor biosynthetic process;0.0445725672779584!GO:0045113;regulation of integrin biosynthetic process;0.0446903433869058!GO:0045112;integrin biosynthetic process;0.0446903433869058!GO:0002377;immunoglobulin production;0.0447471733824397!GO:0032640;tumor necrosis factor production;0.0449895635182541!GO:0051881;regulation of mitochondrial membrane potential;0.0450450867893096!GO:0051539;4 iron, 4 sulfur cluster binding;0.0450450867893096!GO:0005869;dynactin complex;0.0451602860652114!GO:0050864;regulation of B cell activation;0.0455649779618966!GO:0045646;regulation of erythrocyte differentiation;0.0458911056706601!GO:0008017;microtubule binding;0.046503606954856!GO:0050727;regulation of inflammatory response;0.0465294863701259!GO:0031347;regulation of defense response;0.0465294863701259!GO:0015980;energy derivation by oxidation of organic compounds;0.0474404849770126!GO:0051219;phosphoprotein binding;0.0482548638038515!GO:0008139;nuclear localization sequence binding;0.0487364133665149!GO:0043414;biopolymer methylation;0.0487971858351951!GO:0004218;cathepsin S activity;0.0487971858351951!GO:0004672;protein kinase activity;0.0487971858351951!GO:0006693;prostaglandin metabolic process;0.0487971858351951!GO:0006692;prostanoid metabolic process;0.0487971858351951!GO:0046854;phosphoinositide phosphorylation;0.0489560948913473!GO:0043306;positive regulation of mast cell degranulation;0.049086077351128!GO:0045921;positive regulation of exocytosis;0.049086077351128!GO:0043302;positive regulation of leukocyte degranulation;0.049086077351128!GO:0051222;positive regulation of protein transport;0.0492836543118376!GO:0008629;induction of apoptosis by intracellular signals;0.0497045287397515 | |||
|sample_id=12177 | |sample_id=12177 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=GATA6:2.87766034865;ETS1,2:2.62322349557;FOXO1,3,4:2.56350064033;SPI1:2.4358077522;ELF1,2,4:2.38046330617;SPIB:2.32838726463;FOXD3:2.29670901836;DMAP1_NCOR{1,2}_SMARC:2.2214469556;T:2.1476544572;RUNX1..3:2.07773143567;FOX{F1,F2,J1}:1.97727407487;FOX{D1,D2}:1.84786756091;FOXP3:1.83000744885;STAT1,3:1.69352698722;NANOG{mouse}:1.41671695009;IRF7:1.36762248964;IRF1,2:1.35183728978;ALX1:1.34497972922;TLX2:1.32575394712;STAT5{A,B}:1.2526257245;CEBPA,B_DDIT3:1.16715995834;FOX{I1,J2}:1.13179226154;IKZF2:1.1252566289;POU5F1:1.09103164301;TGIF1:1.03813600165;FOXN1:1.00421158286;HMX1:0.986109934433;HBP1_HMGB_SSRP1_UBTF:0.966432751086;FOXA2:0.932792758852;CDX1,2,4:0.923941631439;BPTF:0.900659666148;TFAP4:0.883732552222;SPZ1:0.822022961246;NKX2-2,8:0.803704767009;EP300:0.793930470787;POU2F1..3:0.786591133036;TOPORS:0.742677824971;FOXP1:0.652059500794;STAT2,4,6:0.615909948833;NFATC1..3:0.603147622008;SMAD1..7,9:0.596054900432;NKX6-1,2:0.550959055351;SREBF1,2:0.5323270543;TFCP2:0.520146543731;FOXQ1:0.499537582867;NR1H4:0.486327395933;PAX2:0.483649027248;NFIL3:0.457889428251;HLF:0.456108721804;NFIX:0.452338883984;MYFfamily:0.396495033886;ZNF148:0.345248870901;AIRE:0.343231787719;PAX3,7:0.327901962618;NFE2L2:0.325020916018;CRX:0.318765860698;MYOD1:0.304851779303;ZEB1:0.281596007666;RFX2..5_RFXANK_RFXAP:0.260410940413;HMGA1,2:0.200651452851;PDX1:0.177764875992;RXRA_VDR{dimer}:0.152584068843;OCT4_SOX2{dimer}:0.144796513933;DBP:0.124347312745;NR6A1:0.11778965478;NFKB1_REL_RELA:0.11208273619;SNAI1..3:0.104464160083;RREB1:0.102588372794;EVI1:0.0836556276558;PITX1..3:0.0396699731579;TAL1_TCF{3,4,12}:0.034513617086;NKX3-2:0.0315632316625;ATF5_CREB3:-0.00682989703973;CUX2:-0.0115223486653;MZF1:-0.0207786713593;LMO2:-0.0234207734076;BREu{core}:-0.0269782508217;GATA4:-0.0316327040915;CREB1:-0.0531656212298;RORA:-0.0536899177399;NKX3-1:-0.0602646645982;PPARG:-0.0682526568356;NFE2:-0.0749418921809;NKX2-1,4:-0.0814232896512;RBPJ:-0.117828727231;MYB:-0.122694170969;HOXA9_MEIS1:-0.141387256243;ZNF238:-0.143245158839;MAZ:-0.15741843059;ZNF423:-0.163355252533;POU1F1:-0.171533074384;ATF2:-0.186516764355;GLI1..3:-0.189911273517;ZBTB16:-0.240092556021;ELK1,4_GABP{A,B1}:-0.252456607153;ADNP_IRX_SIX_ZHX:-0.313061948884;SRF:-0.331623277126;NHLH1,2:-0.335723546567;PRDM1:-0.390893573119;NFE2L1:-0.422618804414;LEF1_TCF7_TCF7L1,2:-0.447088934889;XCPE1{core}:-0.447957810706;FOSL2:-0.464546352669;MAFB:-0.48476076431;VSX1,2:-0.4868033965;BACH2:-0.49494519182;REST:-0.502994008397;HNF4A_NR2F1,2:-0.509588082396;SP1:-0.52144934113;PAX4:-0.591809074706;YY1:-0.619999278601;ZFP161:-0.661249517722;ATF4:-0.676086653239;HNF1A:-0.685394778239;RFX1:-0.690317984723;FOS_FOS{B,L1}_JUN{B,D}:-0.699295941156;PRRX1,2:-0.700247263234;MEF2{A,B,C,D}:-0.712665559961;KLF4:-0.720652688172;HES1:-0.720669485513;ZNF143:-0.728941370102;NRF1:-0.744018608925;AR:-0.755769038927;HIF1A:-0.776198982812;EGR1..3:-0.804220855683;ESR1:-0.829789439372;SOX5:-0.833751485827;NR5A1,2:-0.845613576475;ALX4:-0.860887962427;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.892429016429;PATZ1:-0.900487805467;NR3C1:-0.902035095014;JUN:-0.904691112399;PBX1:-0.905844871465;POU6F1:-0.924321531628;EN1,2:-0.933622925334;MED-1{core}:-0.935308887426;GCM1,2:-0.937251774566;MTE{core}:-0.941888713102;GTF2I:-0.960517296431;NKX2-3_NKX2-5:-0.963335999476;MTF1:-0.979492714512;ZNF384:-0.982039289703;NANOG:-0.989259519522;AHR_ARNT_ARNT2:-1.00312413946;FOXL1:-1.00582081657;NFY{A,B,C}:-1.02455647686;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.03201033094;SOX{8,9,10}:-1.03701363674;LHX3,4:-1.03814409079;MYBL2:-1.03974429838;PAX6:-1.0497028022;TBX4,5:-1.07393729151;E2F1..5:-1.10007534815;HIC1:-1.10407688119;SOX2:-1.13377197298;RXR{A,B,G}:-1.15009167436;EBF1:-1.16773298354;TFAP2B:-1.20509682817;TBP:-1.219406258;TLX1..3_NFIC{dimer}:-1.28118670638;ARID5B:-1.28195577;ATF6:-1.28520974281;GFI1:-1.2904793553;PAX5:-1.33427734297;GZF1:-1.34453572276;GFI1B:-1.36556082257;TFAP2{A,C}:-1.37825263717;ZBTB6:-1.47636040004;UFEwm:-1.47716771518;HOX{A6,A7,B6,B7}:-1.48793889314;TP53:-1.49101642802;XBP1:-1.54140059262;HSF1,2:-1.55741050478;POU3F1..4:-1.61468724994;GTF2A1,2:-1.63440233326;bHLH_family:-1.64692710693;PAX8:-1.7371928556;TEAD1:-1.74999271132;FOXM1:-1.76124097136;CDC5L:-1.84790290952;TEF:-1.92389043849;HAND1,2:-1.94901895307;ONECUT1,2:-1.98646759536;TFDP1:-2.04067129594;SOX17:-2.06066371552;HOX{A4,D4}:-2.08227380933;PAX1,9:-2.20493001625;ZIC1..3:-2.2984987448;HOX{A5,B5}:-2.36262103847;ESRRA:-2.41227422515;IKZF1:-2.98644775332 | |top_motifs=GATA6:2.87766034865;ETS1,2:2.62322349557;FOXO1,3,4:2.56350064033;SPI1:2.4358077522;ELF1,2,4:2.38046330617;SPIB:2.32838726463;FOXD3:2.29670901836;DMAP1_NCOR{1,2}_SMARC:2.2214469556;T:2.1476544572;RUNX1..3:2.07773143567;FOX{F1,F2,J1}:1.97727407487;FOX{D1,D2}:1.84786756091;FOXP3:1.83000744885;STAT1,3:1.69352698722;NANOG{mouse}:1.41671695009;IRF7:1.36762248964;IRF1,2:1.35183728978;ALX1:1.34497972922;TLX2:1.32575394712;STAT5{A,B}:1.2526257245;CEBPA,B_DDIT3:1.16715995834;FOX{I1,J2}:1.13179226154;IKZF2:1.1252566289;POU5F1:1.09103164301;TGIF1:1.03813600165;FOXN1:1.00421158286;HMX1:0.986109934433;HBP1_HMGB_SSRP1_UBTF:0.966432751086;FOXA2:0.932792758852;CDX1,2,4:0.923941631439;BPTF:0.900659666148;TFAP4:0.883732552222;SPZ1:0.822022961246;NKX2-2,8:0.803704767009;EP300:0.793930470787;POU2F1..3:0.786591133036;TOPORS:0.742677824971;FOXP1:0.652059500794;STAT2,4,6:0.615909948833;NFATC1..3:0.603147622008;SMAD1..7,9:0.596054900432;NKX6-1,2:0.550959055351;SREBF1,2:0.5323270543;TFCP2:0.520146543731;FOXQ1:0.499537582867;NR1H4:0.486327395933;PAX2:0.483649027248;NFIL3:0.457889428251;HLF:0.456108721804;NFIX:0.452338883984;MYFfamily:0.396495033886;ZNF148:0.345248870901;AIRE:0.343231787719;PAX3,7:0.327901962618;NFE2L2:0.325020916018;CRX:0.318765860698;MYOD1:0.304851779303;ZEB1:0.281596007666;RFX2..5_RFXANK_RFXAP:0.260410940413;HMGA1,2:0.200651452851;PDX1:0.177764875992;RXRA_VDR{dimer}:0.152584068843;OCT4_SOX2{dimer}:0.144796513933;DBP:0.124347312745;NR6A1:0.11778965478;NFKB1_REL_RELA:0.11208273619;SNAI1..3:0.104464160083;RREB1:0.102588372794;EVI1:0.0836556276558;PITX1..3:0.0396699731579;TAL1_TCF{3,4,12}:0.034513617086;NKX3-2:0.0315632316625;ATF5_CREB3:-0.00682989703973;CUX2:-0.0115223486653;MZF1:-0.0207786713593;LMO2:-0.0234207734076;BREu{core}:-0.0269782508217;GATA4:-0.0316327040915;CREB1:-0.0531656212298;RORA:-0.0536899177399;NKX3-1:-0.0602646645982;PPARG:-0.0682526568356;NFE2:-0.0749418921809;NKX2-1,4:-0.0814232896512;RBPJ:-0.117828727231;MYB:-0.122694170969;HOXA9_MEIS1:-0.141387256243;ZNF238:-0.143245158839;MAZ:-0.15741843059;ZNF423:-0.163355252533;POU1F1:-0.171533074384;ATF2:-0.186516764355;GLI1..3:-0.189911273517;ZBTB16:-0.240092556021;ELK1,4_GABP{A,B1}:-0.252456607153;ADNP_IRX_SIX_ZHX:-0.313061948884;SRF:-0.331623277126;NHLH1,2:-0.335723546567;PRDM1:-0.390893573119;NFE2L1:-0.422618804414;LEF1_TCF7_TCF7L1,2:-0.447088934889;XCPE1{core}:-0.447957810706;FOSL2:-0.464546352669;MAFB:-0.48476076431;VSX1,2:-0.4868033965;BACH2:-0.49494519182;REST:-0.502994008397;HNF4A_NR2F1,2:-0.509588082396;SP1:-0.52144934113;PAX4:-0.591809074706;YY1:-0.619999278601;ZFP161:-0.661249517722;ATF4:-0.676086653239;HNF1A:-0.685394778239;RFX1:-0.690317984723;FOS_FOS{B,L1}_JUN{B,D}:-0.699295941156;PRRX1,2:-0.700247263234;MEF2{A,B,C,D}:-0.712665559961;KLF4:-0.720652688172;HES1:-0.720669485513;ZNF143:-0.728941370102;NRF1:-0.744018608925;AR:-0.755769038927;HIF1A:-0.776198982812;EGR1..3:-0.804220855683;ESR1:-0.829789439372;SOX5:-0.833751485827;NR5A1,2:-0.845613576475;ALX4:-0.860887962427;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.892429016429;PATZ1:-0.900487805467;NR3C1:-0.902035095014;JUN:-0.904691112399;PBX1:-0.905844871465;POU6F1:-0.924321531628;EN1,2:-0.933622925334;MED-1{core}:-0.935308887426;GCM1,2:-0.937251774566;MTE{core}:-0.941888713102;GTF2I:-0.960517296431;NKX2-3_NKX2-5:-0.963335999476;MTF1:-0.979492714512;ZNF384:-0.982039289703;NANOG:-0.989259519522;AHR_ARNT_ARNT2:-1.00312413946;FOXL1:-1.00582081657;NFY{A,B,C}:-1.02455647686;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.03201033094;SOX{8,9,10}:-1.03701363674;LHX3,4:-1.03814409079;MYBL2:-1.03974429838;PAX6:-1.0497028022;TBX4,5:-1.07393729151;E2F1..5:-1.10007534815;HIC1:-1.10407688119;SOX2:-1.13377197298;RXR{A,B,G}:-1.15009167436;EBF1:-1.16773298354;TFAP2B:-1.20509682817;TBP:-1.219406258;TLX1..3_NFIC{dimer}:-1.28118670638;ARID5B:-1.28195577;ATF6:-1.28520974281;GFI1:-1.2904793553;PAX5:-1.33427734297;GZF1:-1.34453572276;GFI1B:-1.36556082257;TFAP2{A,C}:-1.37825263717;ZBTB6:-1.47636040004;UFEwm:-1.47716771518;HOX{A6,A7,B6,B7}:-1.48793889314;TP53:-1.49101642802;XBP1:-1.54140059262;HSF1,2:-1.55741050478;POU3F1..4:-1.61468724994;GTF2A1,2:-1.63440233326;bHLH_family:-1.64692710693;PAX8:-1.7371928556;TEAD1:-1.74999271132;FOXM1:-1.76124097136;CDC5L:-1.84790290952;TEF:-1.92389043849;HAND1,2:-1.94901895307;ONECUT1,2:-1.98646759536;TFDP1:-2.04067129594;SOX17:-2.06066371552;HOX{A4,D4}:-2.08227380933;PAX1,9:-2.20493001625;ZIC1..3:-2.2984987448;HOX{A5,B5}:-2.36262103847;ESRRA:-2.41227422515;IKZF1:-2.98644775332 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12177-128I8;search_select_hide=table117:FF:12177-128I8 | |||
}} | }} | ||
Latest revision as of 18:33, 4 June 2020
| Name: | Whole blood (ribopure), donor090325, donation2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11076 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11076
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11076
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.135 |
| 10 | 10 | 0.0567 |
| 100 | 100 | 0.73 |
| 101 | 101 | 0.217 |
| 102 | 102 | 0.989 |
| 103 | 103 | 0.173 |
| 104 | 104 | 0.736 |
| 105 | 105 | 0.15 |
| 106 | 106 | 0.0437 |
| 107 | 107 | 0.586 |
| 108 | 108 | 0.745 |
| 109 | 109 | 0.106 |
| 11 | 11 | 0.0997 |
| 110 | 110 | 0.369 |
| 111 | 111 | 0.153 |
| 112 | 112 | 0.143 |
| 113 | 113 | 0.149 |
| 114 | 114 | 0.0623 |
| 115 | 115 | 0.457 |
| 116 | 116 | 0.8 |
| 117 | 117 | 0.0346 |
| 118 | 118 | 0.378 |
| 119 | 119 | 0.289 |
| 12 | 12 | 0.527 |
| 120 | 120 | 0.812 |
| 121 | 121 | 0.875 |
| 122 | 122 | 0.422 |
| 123 | 123 | 0.0402 |
| 124 | 124 | 0.0856 |
| 125 | 125 | 0.164 |
| 126 | 126 | 0.344 |
| 127 | 127 | 0.421 |
| 128 | 128 | 0.0654 |
| 129 | 129 | 0.649 |
| 13 | 13 | 0.612 |
| 130 | 130 | 0.601 |
| 131 | 131 | 0.901 |
| 132 | 132 | 0.401 |
| 133 | 133 | 0.541 |
| 134 | 134 | 0.957 |
| 135 | 135 | 0.258 |
| 136 | 136 | 0.99 |
| 137 | 137 | 0.0227 |
| 138 | 138 | 0.0459 |
| 139 | 139 | 0.0294 |
| 14 | 14 | 0.192 |
| 140 | 140 | 0.259 |
| 141 | 141 | 0.428 |
| 142 | 142 | 0.501 |
| 143 | 143 | 0.00893 |
| 144 | 144 | 0.764 |
| 145 | 145 | 0.188 |
| 146 | 146 | 0.763 |
| 147 | 147 | 0.143 |
| 148 | 148 | 0.131 |
| 149 | 149 | 0.31 |
| 15 | 15 | 0.0577 |
| 150 | 150 | 0.913 |
| 151 | 151 | 0.229 |
| 152 | 152 | 0.488 |
| 153 | 153 | 0.569 |
| 154 | 154 | 0.935 |
| 155 | 155 | 0.27 |
| 156 | 156 | 0.654 |
| 157 | 157 | 0.233 |
| 158 | 158 | 0.249 |
| 159 | 159 | 0.226 |
| 16 | 16 | 0.455 |
| 160 | 160 | 0.499 |
| 161 | 161 | 0.311 |
| 162 | 162 | 0.529 |
| 163 | 163 | 0.312 |
| 164 | 164 | 0.315 |
| 165 | 165 | 0.0803 |
| 166 | 166 | 0.847 |
| 167 | 167 | 0.819 |
| 168 | 168 | 0.112 |
| 169 | 169 | 0.0152 |
| 17 | 17 | 0.5 |
| 18 | 18 | 0.414 |
| 19 | 19 | 0.393 |
| 2 | 2 | 0.311 |
| 20 | 20 | 0.628 |
| 21 | 21 | 0.472 |
| 22 | 22 | 0.269 |
| 23 | 23 | 0.154 |
| 24 | 24 | 0.109 |
| 25 | 25 | 0.186 |
| 26 | 26 | 0.237 |
| 27 | 27 | 0.0889 |
| 28 | 28 | 0.499 |
| 29 | 29 | 0.416 |
| 3 | 3 | 0.0548 |
| 30 | 30 | 0.821 |
| 31 | 31 | 0.592 |
| 32 | 32 | 0.662 |
| 33 | 33 | 0.72 |
| 34 | 34 | 0.295 |
| 35 | 35 | 0.178 |
| 36 | 36 | 0.258 |
| 37 | 37 | 0.203 |
| 38 | 38 | 0.348 |
| 39 | 39 | 0.901 |
| 4 | 4 | 0.656 |
| 40 | 40 | 0.349 |
| 41 | 41 | 0.129 |
| 42 | 42 | 0.185 |
| 43 | 43 | 0.146 |
| 44 | 44 | 0.459 |
| 45 | 45 | 0.603 |
| 46 | 46 | 0.124 |
| 47 | 47 | 0.143 |
| 48 | 48 | 0.235 |
| 49 | 49 | 0.123 |
| 5 | 5 | 0.229 |
| 50 | 50 | 0.978 |
| 51 | 51 | 0.393 |
| 52 | 52 | 0.575 |
| 53 | 53 | 0.0957 |
| 54 | 54 | 0.36 |
| 55 | 55 | 0.0453 |
| 56 | 56 | 0.269 |
| 57 | 57 | 0.637 |
| 58 | 58 | 0.0534 |
| 59 | 59 | 0.0794 |
| 6 | 6 | 0.635 |
| 60 | 60 | 0.0878 |
| 61 | 61 | 0.221 |
| 62 | 62 | 0.0201 |
| 63 | 63 | 0.488 |
| 64 | 64 | 0.368 |
| 65 | 65 | 0.22 |
| 66 | 66 | 0.424 |
| 67 | 67 | 0.288 |
| 68 | 68 | 0.662 |
| 69 | 69 | 0.469 |
| 7 | 7 | 0.134 |
| 70 | 70 | 0.0515 |
| 71 | 71 | 0.093 |
| 72 | 72 | 0.186 |
| 73 | 73 | 0.352 |
| 74 | 74 | 0.555 |
| 75 | 75 | 0.102 |
| 76 | 76 | 0.351 |
| 77 | 77 | 0.674 |
| 78 | 78 | 0.294 |
| 79 | 79 | 0.996 |
| 8 | 8 | 0.377 |
| 80 | 80 | 0.00935 |
| 81 | 81 | 0.23 |
| 82 | 82 | 0.0267 |
| 83 | 83 | 0.614 |
| 84 | 84 | 0.291 |
| 85 | 85 | 0.151 |
| 86 | 86 | 0.191 |
| 87 | 87 | 0.658 |
| 88 | 88 | 0.616 |
| 89 | 89 | 0.374 |
| 9 | 9 | 0.279 |
| 90 | 90 | 0.0273 |
| 91 | 91 | 0.292 |
| 92 | 92 | 0.0946 |
| 93 | 93 | 0.359 |
| 94 | 94 | 0.102 |
| 95 | 95 | 0.338 |
| 96 | 96 | 0.131 |
| 97 | 97 | 0.714 |
| 98 | 98 | 0.0692 |
| 99 | 99 | 0.532 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11076
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
