FF:12127-128D3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005934 | |||
|accession_numbers=CAGE;DRX008786;DRR009658;DRZ001083;DRZ002468;DRZ012433;DRZ013818 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034 | ||
Line 7: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:19895354..19895369,-!p1@Fosb!2.53!453.85!Fosb;;chr15:101097270..101097290,+!p1@Nr4a1!2.24!1649.55!Nr4a1;;chr7:19895384..19895399,-!p2@Fosb!2.21!222.50!Fosb;;chr11:16908650..16908690,-!p1@Plek!1.89!441.69!Plek;;chr1:193007123..193007139,-!p1@Atf3!1.89!404.10!Atf3;;chr1:38721792..38721845,-!p1@Aff3!1.85!87.20!Aff3;;chr4:124805061..124805087,-!p1@Zc3h12a!1.83!198.32!Zc3h12a;;chr16:55838757..55838774,-!p2@Nfkbiz!1.64!49.61!Nfkbiz;;chr2:90936978..90937023,+!p3@Sfpi1!1.63!76.98!Sfpi1;;chr7:31206743..31206761,+!p1@Nfkbid!1.63!56.11!Nfkbid;;chr1:52065508..52065522,+!p2@Stat4!1.60!45.05!Stat4;;chr8:87502608..87502623,-!p1@Junb!1.56!541.33!Junb;;chr16:92826249..92826325,-!p1@Runx1!1.55!82.78!Runx1;;chr2:90936901..90936945,+!p1@Sfpi1!1.51!160.04!Sfpi1;;chr11:11586218..11586285,+!p1@Ikzf1!1.50!95.08!Ikzf1;;chr2:90936947..90936977,+!p2@Sfpi1!1.49!57.77!Sfpi1;;chr11:23670750..23670789,-!p2@Rel!1.49!55.56!Rel;;chr6:52176164..52176195,-!p1@Hoxa9!1.46!34.69!Hoxa9;;chr2:56967334..56967366,-!p1@Nr4a2!1.43!52.38!Nr4a2;;chr4:134708451..134708469,+!p1@Runx3!1.43!44.64!Runx3;;chr19:5447886..5447905,+!p1@Fosl1!1.43!25.98!Fosl1;;chr17:44872561..44872615,-!p1@Runx2!1.42!55.83!Runx2;;chr4:48058129..48058179,+!p2@Nr4a3!1.41!45.61!Nr4a3;;chr3:135354384..135354443,-!p1@Nfkb1!1.38!136.40!Nfkb1;;chr5:140267510..140267555,+!p2@Mafk!1.38!53.76!Mafk;;chr17:44873258..44873281,-!p5@Runx2!1.38!30.27!Runx2;;chr1:52065454..52065495,+!p1@Stat4!1.37!36.48!Stat4;;chr7:19895546..19895577,-!p3@Fosb!1.36!21.97!Fosb;;chr10:20880629..20880683,-!p1@Myb!1.29!52.93!Myb;;chr13:59923965..59924003,-!p2@Zcchc6!1.29!21.97!Zcchc6;;chr14:79915425..79915501,+!p1@Elf1!1.28!155.34!Elf1;;chr18:3281750..3281776,-!p2@Crem!1.28!36.21!Crem;;chr17:45692676..45692695,+!p2@Nfkbie!1.28!36.21!Nfkbie;;chr12:86814833..86814846,+!p1@Fos!1.27!398.85!Fos;;chr19:43686789..43686811,+!p1@Nkx2-3!1.26!17.27!Nkx2-3;;chr19:5637528..5637548,+!p2@Rela!1.25!95.91!Rela;;chr16:55822241..55822258,-!p1@Nfkbiz!1.24!495.59!Nfkbiz;;chr5:92391466..92391471,+!p2@Thap6!1.24!23.63!Thap6;;chr11:23670953..23671028,-!p1@Rel!1.23!89.83!Rel;;chr19:5447692..5447711,+!p2@Fosl1!1.20!14.93!Fosl1;;chr1:36364590..36364608,+!p1@Arid5a!1.18!143.31!Arid5a;;chr11:90252223..90252240,-!p1@Hlf!1.18!116.92!Hlf;;chr4:94718861..94718872,-!p2@Jun!1.18!105.03!Jun;;chr17:45692642..45692663,+!p1@Nfkbie!1.17!43.39!Nfkbie;;chr13:83663902..83663927,+!p1@Mef2c!1.16!320.35!Mef2c;;chr15:103085802..103085817,-!p4@Nfe2!1.16!16.72!Nfe2;;chr4:55545337..55545357,-!p1@Klf4!1.15!191.55!Klf4;;chr11:53583544..53583559,+!p1@Irf1!1.13!206.75!Irf1;;chr7:20214704..20214800,-!p1@Relb!1.13!40.77!Relb;;chr6:99216488..99216534,-!p2@Foxp1!1.13!35.10!Foxp1;;chr4:48058016..48058032,+!p3@Nr4a3!1.13!21.42!Nr4a3;;chr12:56593574..56593592,-!p1@Nfkbia!1.12!623.97!Nfkbia;;chr13:30841099..30841116,+!p1@Irf4!1.12!19.07!Irf4;;chr7:31208285..31208312,+!p3@Nfkbid!1.12!13.41!Nfkbid;;chr1:52065530..52065548,+!p3@Stat4!1.12!12.30!Stat4;;chr19:46379199..46379301,+!p1@Nfkb2!1.11!68.27!Nfkb2;;chr3:135271185..135271254,-!p4@Nfkb1!1.11!21.97!Nfkb1;;chr19:12871064..12871095,-!p2@Zfp91!1.11!12.02!Zfp91;;chr15:38230415..38230426,-!p2@Klf10!1.10!40.49!Klf10;;chr4:48058047..48058062,+!p1@Nr4a3!1.10!17.83!Nr4a3;;chr10:20880731..20880775,-!p2@Myb!1.09!23.63!Myb;;chr4:124805092..124805135,-!p2@Zc3h12a!1.08!47.13!Zc3h12a;;chr16:3744162..3744180,+!p2@Zfp263!1.08!30.13!Zfp263;;chr11:100683839..100683890,-!p2@Stat5b!1.08!26.26!Stat5b;;chr16:3744192..3744206,+!p4@Zfp263!1.08!14.10!Zfp263;;chr18:3281725..3281740,-!p3@Crem!1.07!13.68!Crem;;chr13:5860776..5860796,+!p1@Klf6!1.06!254.01!Klf6;;chr15:38230448..38230470,-!p1@Klf10!1.06!222.64!Klf10;;chr5:22940353..22940372,+!p3@Mll5!1.06!20.45!Mll5;;chr7:71083729..71083742,-!p4@Klf13!1.06!18.38!Klf13;;chr6:53523358..53523388,+!p1@Creb5!1.05!124.10!Creb5;;chr5:125538737..125538781,-!p2@Ncor2!1.05!37.31!Ncor2;;chr11:100800641..100800669,-!p3@Stat3!1.05!17.97!Stat3;;chr7:31207408..31207450,+!p4@Nfkbid!1.05!17.00!Nfkbid;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.05!13.27!Zbtb11;;chr3:30993974..30994045,+!p1@Skil!1.04!280.82!Skil;;chrX:137077653..137077669,-!p3@Tsc22d3!1.04!45.33!Tsc22d3;;chr14:79915502..79915514,+!p4@Elf1!1.03!15.06!Elf1;;chr1:193041811..193041838,-!p2@Atf3!1.03!9.67!Atf3;;chr2:168781029..168781093,-!p2@LOC100502777,p2@Zfp64!1.02!33.44!Zfp64;;chr6:108610428..108610440,+!p4@Bhlhe40!1.02!12.99!Bhlhe40;;chr19:37509324..37509337,+!p1@Hhex!1.01!66.06!Hhex;;chr15:79177964..79177986,+!p1@Maff!1.01!32.34!Maff;;chr2:126501847..126501876,-!p5@Gabpb1!1.01!10.50!Gabpb1;;chr6:52176144..52176161,-!p2@Hoxa9!1.01!9.12!Hoxa9;;chr15:25914235..25914246,+!p5@Zfp622!1.00!8.98!Zfp622;;chr2:126501799..126501832,-!p4@Gabpb1!1.00!8.98!Gabpb1;;chr6:108610610..108610676,+!p1@Bhlhe40!0.99!435.61!Bhlhe40;;chr14:79915521..79915539,+!p5@Elf1!0.99!10.64!Elf1;;chr16:95680889..95680991,-!p1@Erg!0.98!71.45!Erg;;chr13:5860872..5860883,+!p3@Klf6!0.98!17.41!Klf6;;chr6:108610766..108610781,+!p2@Bhlhe40!0.98!15.62!Bhlhe40;;chr6: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fp160;;chr6:92041489..92041500,+!p4@Nr2c2!0.19!1.66!Nr2c2;;chr9:96619968..96619983,-!p6@Zbtb38!0.19!1.52!Zbtb38;;chr2:156666435..156666476,+!p4@Tgif2!0.19!0.83!Tgif2;;chr15:57527217..57527240,+!p6@Zhx2!0.19!0.83!Zhx2;;chr5:138188180..138188203,+!p12@Tsc22d4!0.19!0.83!Tsc22d4;;chr5:125538703..125538715,-!p5@Ncor2!0.19!0.83!Ncor2;;chr5:137042338..137042372,-!p5@Cux1!0.19!0.55!Cux1;;chr6:88143570..88143590,+!p4@Gata2!0.19!0.55!Gata2;;chr5:38611199..38611209,+!p6@Lyar!0.19!0.55!Lyar;;chr7:17642177..17642223,-!p3@Hif3a!0.19!0.55!Hif3a;;chr6:16848443..16848459,-!p3@Tfec!0.19!0.55!Tfec;;chr6:99216360..99216372,-!p8@Foxp1!0.19!0.55!Foxp1;;chr6:52167434..52167450,-!p3@Hoxa7!0.19!0.55!Hoxa7;;chr2:168427068..168427115,-!p3@Nfatc2!0.19!0.55!Nfatc2;;chr9:8900459..8900489,+!p1@Pgr!0.19!0.55!Pgr;;chr8:77540157..77540170,+!p3@Hmgxb4!0.19!0.55!Hmgxb4;;chr8:74842792..74842814,+!p2@Klf2!0.19!0.55!Klf2;;chr11:5420655..5420659,+!p3@Xbp1!0.19!0.55!Xbp1;;chr11:98822047..98822072,+!p9@Rara!0.19!0.55!Rara;;chr10:119913954..119913972,-!p8@Hmga2!0.19!0.55!Hmga2;;chr10:20032169..20032206,+!p8@Bclaf1!0.19!0.55!Bclaf1;;chr11:96180069..96180089,+!p3@Hoxb4!0.19!0.55!Hoxb4;;chr10:119913766..119913779,-!p10@Hmga2!0.19!0.55!Hmga2;;chr11:23978206..23978219,+!p12@Bcl11a!0.19!0.55!Bcl11a;;chrX:7544943..7545001,-!p1@Gata1!0.19!0.55!Gata1;;chr12:75002389..75002406,+!p4@Hif1a!0.19!0.55!Hif1a;;chr15:25914088..25914091,+!p6@Zfp622!0.19!0.55!Zfp622;;chr14:55330976..55330990,-!p1@Cebpe!0.19!0.55!Cebpe;;chr4:44717308..44717321,-!p6@Pax5!0.19!0.55!Pax5;;chr4:48064251..48064268,+!p12@Nr4a3!0.19!0.55!Nr4a3;;chr4:48061898..48061935,+!p8@Nr4a3!0.19!0.55!Nr4a3;;chr15:79178559..79178584,+!p8@Maff!0.19!0.55!Maff;;chr16:30064250..30064282,+!p6@Hes1!0.19!0.55!Hes1;;chr19:37511111..37511115,+!p2@Hhex!0.19!0.55!Hhex;;chr19:23215616..23215627,+!p9@Klf9!0.19!0.55!Klf9;;chr18:3280995..3281013,-!p23@Crem!0.19!0.55!Crem;;chr17:34168732..34168766,+!p1@Rxrb!0.18!35.79!Rxrb;;chr4:120887676..120887719,-!p1@Rlf!0.18!27.50!Rlf;;chr13:53076396..53076452,-!p1@Nfil3!0.18!24.05!Nfil3;;chr1:181476358..181476391,-!p1@Tfb2m!0.18!20.45!Tfb2m;;chr17:31701694..31701799,+!p1@Pknox1!0.18!14.37!Pknox1;;chr2:17986272..17986332,+!p2@Mllt10!0.18!13.68!Mllt10;;chr5:137043177..137043190,-!p2@Cux1!0.18!10.78!Cux1;;chr18:84255841..84255883,-!p1@Tshz1!0.18!8.84!Tshz1;;chr17:46693153..46693169,-!p2@Srf!0.18!6.36!Srf;;chr18:83080305..83080335,+!p2@Zfp516!0.18!3.45!Zfp516;;chr5:147760339..147760350,+!p3@Gtf3a!0.18!3.18!Gtf3a;;chr6:124959016..124959061,+!p3@Zfp384!0.18!2.90!Zfp384;;chr3:9610074..9610086,-!p2@Zfp704!0.18!2.49!Zfp704;;chr4:126700722..126700753,+!p4@Sfpq!0.18!2.49!Sfpq;;chr10:119913546..119913583,-!p3@Hmga2!0.18!2.07!Hmga2;;chr7:74517748..74517757,-!p3@Mef2a!0.18!1.93!Mef2a;;chr19:26681721..26681746,+!p9@Smarca2!0.18!1.93!Smarca2;;chr13:53076382..53076393,-!p2@Nfil3!0.18!1.38!Nfil3;;chr8:81552528..81552553,+!p6@Zfp827!0.18!1.38!Zfp827;;chr15:100058302..100058309,+!p3@Gm1862,p5@Atf1!0.18!1.11!Atf1;;chr19:23216166..23216191,+!p6@Klf9!0.18!0.97!Klf9;;chr3:133207214..133207228,-!p2@Tet2!0.18!0.83!Tet2;;chr3:29912058..29912071,-!p6@Mecom!0.18!0.69!Mecom;;chr14:75684150..75684197,+!p1@Zc3h13!0.17!42.98!Zc3h13;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.17!40.08!Zfp706;;chr1:15795720..15795756,+!p1@Terf1!0.17!38.56!Terf1;;chr12:117285924..117286018,+!p1@Zfp386!0.17!37.59!Zfp386;;chr2:165818125..165818167,+!p1@Ncoa3!0.17!35.52!Ncoa3;;chr10:22451112..22451136,-!p1@Tbpl1!0.17!31.79!Tbpl1;;chr4:102787007..102787050,+!p1@Mier1!0.17!21.14!Mier1;;chr17:21625946..21626024,+!p1@Zfp53!0.17!13.96!Zfp53;;chr8:108939219..108939296,+!p1@Zfp90!0.17!13.54!Zfp90;;chr9:113840108..113840184,+!p2@Ubp1!0.17!11.75!Ubp1;;chr8:124900576..124900601,+!p2@Zc3h18!0.17!5.39!Zc3h18;;chr12:77470507..77470572,-!p2@Zbtb25!0.17!4.42!Zbtb25;;chr14:52898807..52898863,+!p2@Tox4!0.17!3.18!Tox4;;chr1:138521574..138521597,+!p3@Zfp281!0.17!2.35!Zfp281;; | |expression_enrichment_score=chr7:19895354..19895369,-!p1@Fosb!2.53!453.85!Fosb;;chr15:101097270..101097290,+!p1@Nr4a1!2.24!1649.55!Nr4a1;;chr7:19895384..19895399,-!p2@Fosb!2.21!222.50!Fosb;;chr11:16908650..16908690,-!p1@Plek!1.89!441.69!Plek;;chr1:193007123..193007139,-!p1@Atf3!1.89!404.10!Atf3;;chr1:38721792..38721845,-!p1@Aff3!1.85!87.20!Aff3;;chr4:124805061..124805087,-!p1@Zc3h12a!1.83!198.32!Zc3h12a;;chr16:55838757..55838774,-!p2@Nfkbiz!1.64!49.61!Nfkbiz;;chr2:90936978..90937023,+!p3@Sfpi1!1.63!76.98!Sfpi1;;chr7:31206743..31206761,+!p1@Nfkbid!1.63!56.11!Nfkbid;;chr1:52065508..52065522,+!p2@Stat4!1.60!45.05!Stat4;;chr8:87502608..87502623,-!p1@Junb!1.56!541.33!Junb;;chr16:92826249..92826325,-!p1@Runx1!1.55!82.78!Runx1;;chr2:90936901..90936945,+!p1@Sfpi1!1.51!160.04!Sfpi1;;chr11:11586218..11586285,+!p1@Ikzf1!1.50!95.08!Ikzf1;;chr2:90936947..90936977,+!p2@Sfpi1!1.49!57.77!Sfpi1;;chr11:23670750..23670789,-!p2@Rel!1.49!55.56!Rel;;chr6:52176164..52176195,-!p1@Hoxa9!1.46!34.69!Hoxa9;;chr2:56967334..56967366,-!p1@Nr4a2!1.43!52.38!Nr4a2;;chr4:134708451..134708469,+!p1@Runx3!1.43!44.64!Runx3;;chr19:5447886..5447905,+!p1@Fosl1!1.43!25.98!Fosl1;;chr17:44872561..44872615,-!p1@Runx2!1.42!55.83!Runx2;;chr4:48058129..48058179,+!p2@Nr4a3!1.41!45.61!Nr4a3;;chr3:135354384..135354443,-!p1@Nfkb1!1.38!136.40!Nfkb1;;chr5:140267510..140267555,+!p2@Mafk!1.38!53.76!Mafk;;chr17:44873258..44873281,-!p5@Runx2!1.38!30.27!Runx2;;chr1:52065454..52065495,+!p1@Stat4!1.37!36.48!Stat4;;chr7:19895546..19895577,-!p3@Fosb!1.36!21.97!Fosb;;chr10:20880629..20880683,-!p1@Myb!1.29!52.93!Myb;;chr13:59923965..59924003,-!p2@Zcchc6!1.29!21.97!Zcchc6;;chr14:79915425..79915501,+!p1@Elf1!1.28!155.34!Elf1;;chr18:3281750..3281776,-!p2@Crem!1.28!36.21!Crem;;chr17:45692676..45692695,+!p2@Nfkbie!1.28!36.21!Nfkbie;;chr12:86814833..86814846,+!p1@Fos!1.27!398.85!Fos;;chr19:43686789..43686811,+!p1@Nkx2-3!1.26!17.27!Nkx2-3;;chr19:5637528..5637548,+!p2@Rela!1.25!95.91!Rela;;chr16:55822241..55822258,-!p1@Nfkbiz!1.24!495.59!Nfkbiz;;chr5:92391466..92391471,+!p2@Thap6!1.24!23.63!Thap6;;chr11:23670953..23671028,-!p1@Rel!1.23!89.83!Rel;;chr19:5447692..5447711,+!p2@Fosl1!1.20!14.93!Fosl1;;chr1:36364590..36364608,+!p1@Arid5a!1.18!143.31!Arid5a;;chr11:90252223..90252240,-!p1@Hlf!1.18!116.92!Hlf;;chr4:94718861..94718872,-!p2@Jun!1.18!105.03!Jun;;chr17:45692642..45692663,+!p1@Nfkbie!1.17!43.39!Nfkbie;;chr13:83663902..83663927,+!p1@Mef2c!1.16!320.35!Mef2c;;chr15:103085802..103085817,-!p4@Nfe2!1.16!16.72!Nfe2;;chr4:55545337..55545357,-!p1@Klf4!1.15!191.55!Klf4;;chr11:53583544..53583559,+!p1@Irf1!1.13!206.75!Irf1;;chr7:20214704..20214800,-!p1@Relb!1.13!40.77!Relb;;chr6:99216488..99216534,-!p2@Foxp1!1.13!35.10!Foxp1;;chr4:48058016..48058032,+!p3@Nr4a3!1.13!21.42!Nr4a3;;chr12:56593574..56593592,-!p1@Nfkbia!1.12!623.97!Nfkbia;;chr13:30841099..30841116,+!p1@Irf4!1.12!19.07!Irf4;;chr7:31208285..31208312,+!p3@Nfkbid!1.12!13.41!Nfkbid;;chr1:52065530..52065548,+!p3@Stat4!1.12!12.30!Stat4;;chr19:46379199..46379301,+!p1@Nfkb2!1.11!68.27!Nfkb2;;chr3:135271185..135271254,-!p4@Nfkb1!1.11!21.97!Nfkb1;;chr19:12871064..12871095,-!p2@Zfp91!1.11!12.02!Zfp91;;chr15:38230415..38230426,-!p2@Klf10!1.10!40.49!Klf10;;chr4:48058047..48058062,+!p1@Nr4a3!1.10!17.83!Nr4a3;;chr10:20880731..20880775,-!p2@Myb!1.09!23.63!Myb;;chr4:124805092..124805135,-!p2@Zc3h12a!1.08!47.13!Zc3h12a;;chr16:3744162..3744180,+!p2@Zfp263!1.08!30.13!Zfp263;;chr11:100683839..100683890,-!p2@Stat5b!1.08!26.26!Stat5b;;chr16:3744192..3744206,+!p4@Zfp263!1.08!14.10!Zfp263;;chr18:3281725..3281740,-!p3@Crem!1.07!13.68!Crem;;chr13:5860776..5860796,+!p1@Klf6!1.06!254.01!Klf6;;chr15:38230448..38230470,-!p1@Klf10!1.06!222.64!Klf10;;chr5:22940353..22940372,+!p3@Mll5!1.06!20.45!Mll5;;chr7:71083729..71083742,-!p4@Klf13!1.06!18.38!Klf13;;chr6:53523358..53523388,+!p1@Creb5!1.05!124.10!Creb5;;chr5:125538737..125538781,-!p2@Ncor2!1.05!37.31!Ncor2;;chr11:100800641..100800669,-!p3@Stat3!1.05!17.97!Stat3;;chr7:31207408..31207450,+!p4@Nfkbid!1.05!17.00!Nfkbid;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.05!13.27!Zbtb11;;chr3:30993974..30994045,+!p1@Skil!1.04!280.82!Skil;;chrX:137077653..137077669,-!p3@Tsc22d3!1.04!45.33!Tsc22d3;;chr14:79915502..79915514,+!p4@Elf1!1.03!15.06!Elf1;;chr1:193041811..193041838,-!p2@Atf3!1.03!9.67!Atf3;;chr2:168781029..168781093,-!p2@LOC100502777,p2@Zfp64!1.02!33.44!Zfp64;;chr6:108610428..108610440,+!p4@Bhlhe40!1.02!12.99!Bhlhe40;;chr19:37509324..37509337,+!p1@Hhex!1.01!66.06!Hhex;;chr15:79177964..79177986,+!p1@Maff!1.01!32.34!Maff;;chr2:126501847..126501876,-!p5@Gabpb1!1.01!10.50!Gabpb1;;chr6:52176144..52176161,-!p2@Hoxa9!1.01!9.12!Hoxa9;;chr15:25914235..25914246,+!p5@Zfp622!1.00!8.98!Zfp622;;chr2:126501799..126501832,-!p4@Gabpb1!1.00!8.98!Gabpb1;;chr6:108610610..108610676,+!p1@Bhlhe40!0.99!435.61!Bhlhe40;;chr14:79915521..79915539,+!p5@Elf1!0.99!10.64!Elf1;;chr16:95680889..95680991,-!p1@Erg!0.98!71.45!Erg;;chr13:5860872..5860883,+!p3@Klf6!0.98!17.41!Klf6;;chr6:108610766..108610781,+!p2@Bhlhe40!0.98!15.62!Bhlhe40;;chr6:52163319..52163342,-!p1@Hoxa3!0.98!12.58!Hoxa3;;chr6:133986042..133986052,+!p7@Etv6!0.98!11.33!Etv6;;chr2:168781014..168781025,-!p4@LOC100502777,p4@Zfp64!0.98!8.57!Zfp64;;chr4:94718879..94718898,-!p1@Jun!0.97!616.79!Jun;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.97!60.95!Hmga1;;chr1:38721779..38721790,-!p6@Aff3!0.97!8.43!Aff3;;chr13:83663868..83663894,+!p2@Mef2c!0.96!118.71!Mef2c;;chr6:88148650..88148669,+!p1@Gata2!0.95!67.86!Gata2;;chr18:75527210..75527215,+!p4@Smad7!0.95!13.54!Smad7;;chr11:11585678..11585745,+!p5@Ikzf1!0.93!11.19!Ikzf1;;chr11:23671230..23671264,-!p6@Rel!0.93!7.60!Rel;;chr6:28347999..28348023,-!p3@Zfp800!0.93!7.46!Zfp800;;chr10:5734525..5734569,-!p3@Esr1!0.92!12.44!Esr1;;chr4:134676555..134676575,+!p2@Runx3!0.92!7.32!Runx3;;chr1:92949999..92950097,+!p1@Lrrfip1!0.91!195.69!Lrrfip1;;chr19:5637501..5637517,+!p4@Rela!0.91!29.85!Rela;;chr17:51971932..51971958,-!p2@Satb1!0.91!9.81!Satb1;;chr1:38721767..38721778,-!p5@Aff3!0.91!7.05!Aff3;;chr12:78063057..78063070,-!p3@Max!0.90!15.06!Max;;chr10:20880698..20880717,-!p3@Myb!0.90!11.19!Myb;;chr16:55838743..55838754,-!p6@Nfkbiz!0.90!6.91!Nfkbiz;;chr8:87225670..87225697,+!p2@Lyl1!0.89!20.32!Lyl1;;chr15:25914217..25914232,+!p3@Zfp622!0.89!13.27!Zfp622;;chr13:64254437..64254453,-!p4@Zfp367!0.89!9.40!Zfp367;;chr15:79178060..79178074,+!p2@Maff!0.89!8.98!Maff;;chr5:22940320..22940331,+!p2@Mll5!0.88!20.59!Mll5;;chr8:73222830..73222844,+!p1@Jund!0.87!1688.11!Jund;;chr14:76904313..76904328,+!p1@Tsc22d1!0.87!1312.07!Tsc22d1;;chr2:126501197..126501245,-!p1@Gabpb1!0.87!51.82!Gabpb1;;chr4:63064364..63064384,-!p1@Akna!0.87!19.49!Akna;;chr17:44873393..44873418,-!p4@Runx2!0.87!11.47!Runx2;;chr10:119913792..119913820,-!p5@Hmga2!0.87!11.33!Hmga2;;chr17:51971960..51971979,-!p1@Satb1!0.87!8.71!Satb1;;chr8:74842952..74842970,+!p1@Klf2!0.86!442.79!Klf2;;chr6:86619104..86619119,-!p1@Mxd1!0.86!54.59!Mxd1;;chr11:100721761..100721851,+!p1@Stat5a!0.85!47.82!Stat5a;;chr19:46380235..46380277,+!p3@Nfkb2!0.85!13.82!Nfkb2;;chr6:28348078..28348109,-!p5@Zfp800!0.85!6.08!Zfp800;;chr6:133985993..133986029,+!p2@Etv6!0.84!40.91!Etv6;;chr13:64254457..64254497,-!p1@Zfp367!0.84!28.19!Zfp367;;chr1:133904901..133904934,+!p3@Elk4!0.84!18.24!Elk4;;chr6:29479277..29479296,+!p2@Irf5!0.84!5.94!Irf5;;chr7:138553839..138553860,-!p2@Ikzf5!0.84!5.94!Ikzf5;;chr10:20881239..20881254,-!p5@Myb!0.84!5.94!Myb;;chr10:126727842..126727859,+!p1@Ddit3!0.83!178.69!Ddit3;;chr16:3872255..3872283,-!p4@Zfp597!0.83!8.71!Zfp597;;chr1:133904217..133904250,+!p5@Elk4!0.82!19.35!Elk4;;chr11:23978111..23978134,+!p3@Bcl11a!0.82!12.30!Bcl11a;;chr11:90250944..90250982,-!p2@Hlf!0.82!9.67!Hlf;;chr11:23670827..23670846,-!p3@Rel!0.82!5.67!Rel;;chr17:44872524..44872537,-!p9@Runx2!0.82!5.67!Runx2;;chr7:20408047..20408125,-!p1@Bcl3!0.81!66.34!Bcl3;;chr9:32348943..32349001,-!p1@Fli1!0.81!48.37!Fli1;;chr15:103085660..103085681,-!p1@Nfe2!0.80!8.29!Nfe2;;chr2:126501184..126501196,-!p6@Gabpb1!0.80!7.60!Gabpb1;;chrX:137077608..137077619,-!p6@Tsc22d3!0.80!7.32!Tsc22d3;;chr1:92950128..92950139,+!p4@Lrrfip1!0.80!5.25!Lrrfip1;;chr5:140267476..140267493,+!p1@Mafk!0.79!31.23!Mafk;;chr7:29551464..29551487,-!p2@Nfkbib!0.79!21.70!Nfkbib;;chr17:27693818..27693830,+!p7@Hmga1-rs1,p8@Hmga1!0.79!12.30!Hmga1;;chr12:78063032..78063043,-!p4@Max!0.79!7.32!Max;;chr11:90251852..90251855,-!p4@Hlf!0.79!6.50!Hlf;;chr8:73222425..73222444,+!p2@Jund!0.79!5.11!Jund;;chr6:133985709..133985735,+!p5@Etv6!0.78!14.93!Etv6;;chr10:119913278..119913298,-!p2@Hmga2!0.78!11.89!Hmga2;;chr16:92826232..92826245,-!p4@Runx1!0.77!4.84!Runx1;;chr18:35020854..35020869,+!p1@Egr1!0.76!199.84!Egr1;;chr12:25336211..25336274,+!p1@Klf11!0.76!54.45!Klf11;;chr13:59924354..59924366,-!p3@Zcchc6!0.76!9.40!Zcchc6;;chr11:18918434..18918489,-!p3@Meis1!0.76!7.88!Meis1;;chr6:108610513..108610528,+!p3@Bhlhe40!0.76!7.60!Bhlhe40;;chr7:19895122..19895142,-!p4@Fosb!0.76!4.70!Fosb;;chr15:80085920..80085941,+!p1@Atf4!0.75!590.94!Atf4;;chr12:86940338..86940357,+!p1@Jdp2!0.75!50.30!Jdp2;;chr10:30375579..30375616,-!p3@Ncoa7!0.75!11.75!Ncoa7;;chr1:92950099..92950109,+!p3@Lrrfip1!0.75!5.53!Lrrfip1;;chr6:85463580..85463585,-!p1@Egr4!0.75!4.56!Egr4;;chr18:80909801..80909819,-!p1@Nfatc1!0.74!29.57!Nfatc1;;chr2:168415815..168415872,-!p1@Nfatc2!0.74!26.81!Nfatc2;;chr16:87699206..87699229,+!p3@Bach1!0.74!26.67!Bach1;;chr10:20032330..20032345,+!p3@Bclaf1!0.74!23.63!Bclaf1;;chr6:29476690..29476724,+!p1@Irf5!0.74!23.08!Irf5;;chr19:5637489..5637500,+!p5@Rela!0.74!12.44!Rela;;chr12:72117645..72117677,+!p3@Arid4a!0.74!10.23!Arid4a;;chr4:48058102..48058110,+!p5@Nr4a3!0.74!5.11!Nr4a3;;chrX:7339938..7339963,+!p1@Tfe3!0.73!24.60!Tfe3;;chr5:32438395..32438406,+!p3@Fosl2!0.73!7.05!Fosl2;;chr11:11585912..11585950,+!p6@Ikzf1!0.73!5.67!Ikzf1;;chr15:79178029..79178044,+!p4@Maff!0.73!5.53!Maff;;chr2:90936867..90936874,+!p7@Sfpi1!0.73!4.42!Sfpi1;;chr4:134708909..134708939,+!p3@Runx3!0.73!4.42!Runx3;;chr2:156665889..156665900,+!p8@Tgif2!0.73!4.42!Tgif2;;chr8:107694661..107694713,+!p2@Cbfb!0.72!32.06!Cbfb;;chr12:25336286..2533629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fp160;;chr6:92041489..92041500,+!p4@Nr2c2!0.19!1.66!Nr2c2;;chr9:96619968..96619983,-!p6@Zbtb38!0.19!1.52!Zbtb38;;chr2:156666435..156666476,+!p4@Tgif2!0.19!0.83!Tgif2;;chr15:57527217..57527240,+!p6@Zhx2!0.19!0.83!Zhx2;;chr5:138188180..138188203,+!p12@Tsc22d4!0.19!0.83!Tsc22d4;;chr5:125538703..125538715,-!p5@Ncor2!0.19!0.83!Ncor2;;chr5:137042338..137042372,-!p5@Cux1!0.19!0.55!Cux1;;chr6:88143570..88143590,+!p4@Gata2!0.19!0.55!Gata2;;chr5:38611199..38611209,+!p6@Lyar!0.19!0.55!Lyar;;chr7:17642177..17642223,-!p3@Hif3a!0.19!0.55!Hif3a;;chr6:16848443..16848459,-!p3@Tfec!0.19!0.55!Tfec;;chr6:99216360..99216372,-!p8@Foxp1!0.19!0.55!Foxp1;;chr6:52167434..52167450,-!p3@Hoxa7!0.19!0.55!Hoxa7;;chr2:168427068..168427115,-!p3@Nfatc2!0.19!0.55!Nfatc2;;chr9:8900459..8900489,+!p1@Pgr!0.19!0.55!Pgr;;chr8:77540157..77540170,+!p3@Hmgxb4!0.19!0.55!Hmgxb4;;chr8:74842792..74842814,+!p2@Klf2!0.19!0.55!Klf2;;chr11:5420655..5420659,+!p3@Xbp1!0.19!0.55!Xbp1;;chr11:98822047..98822072,+!p9@Rara!0.19!0.55!Rara;;chr10:119913954..119913972,-!p8@Hmga2!0.19!0.55!Hmga2;;chr10:20032169..20032206,+!p8@Bclaf1!0.19!0.55!Bclaf1;;chr11:96180069..96180089,+!p3@Hoxb4!0.19!0.55!Hoxb4;;chr10:119913766..119913779,-!p10@Hmga2!0.19!0.55!Hmga2;;chr11:23978206..23978219,+!p12@Bcl11a!0.19!0.55!Bcl11a;;chrX:7544943..7545001,-!p1@Gata1!0.19!0.55!Gata1;;chr12:75002389..75002406,+!p4@Hif1a!0.19!0.55!Hif1a;;chr15:25914088..25914091,+!p6@Zfp622!0.19!0.55!Zfp622;;chr14:55330976..55330990,-!p1@Cebpe!0.19!0.55!Cebpe;;chr4:44717308..44717321,-!p6@Pax5!0.19!0.55!Pax5;;chr4:48064251..48064268,+!p12@Nr4a3!0.19!0.55!Nr4a3;;chr4:48061898..48061935,+!p8@Nr4a3!0.19!0.55!Nr4a3;;chr15:79178559..79178584,+!p8@Maff!0.19!0.55!Maff;;chr16:30064250..30064282,+!p6@Hes1!0.19!0.55!Hes1;;chr19:37511111..37511115,+!p2@Hhex!0.19!0.55!Hhex;;chr19:23215616..23215627,+!p9@Klf9!0.19!0.55!Klf9;;chr18:3280995..3281013,-!p23@Crem!0.19!0.55!Crem;;chr17:34168732..34168766,+!p1@Rxrb!0.18!35.79!Rxrb;;chr4:120887676..120887719,-!p1@Rlf!0.18!27.50!Rlf;;chr13:53076396..53076452,-!p1@Nfil3!0.18!24.05!Nfil3;;chr1:181476358..181476391,-!p1@Tfb2m!0.18!20.45!Tfb2m;;chr17:31701694..31701799,+!p1@Pknox1!0.18!14.37!Pknox1;;chr2:17986272..17986332,+!p2@Mllt10!0.18!13.68!Mllt10;;chr5:137043177..137043190,-!p2@Cux1!0.18!10.78!Cux1;;chr18:84255841..84255883,-!p1@Tshz1!0.18!8.84!Tshz1;;chr17:46693153..46693169,-!p2@Srf!0.18!6.36!Srf;;chr18:83080305..83080335,+!p2@Zfp516!0.18!3.45!Zfp516;;chr5:147760339..147760350,+!p3@Gtf3a!0.18!3.18!Gtf3a;;chr6:124959016..124959061,+!p3@Zfp384!0.18!2.90!Zfp384;;chr3:9610074..9610086,-!p2@Zfp704!0.18!2.49!Zfp704;;chr4:126700722..126700753,+!p4@Sfpq!0.18!2.49!Sfpq;;chr10:119913546..119913583,-!p3@Hmga2!0.18!2.07!Hmga2;;chr7:74517748..74517757,-!p3@Mef2a!0.18!1.93!Mef2a;;chr19:26681721..26681746,+!p9@Smarca2!0.18!1.93!Smarca2;;chr13:53076382..53076393,-!p2@Nfil3!0.18!1.38!Nfil3;;chr8:81552528..81552553,+!p6@Zfp827!0.18!1.38!Zfp827;;chr15:100058302..100058309,+!p3@Gm1862,p5@Atf1!0.18!1.11!Atf1;;chr19:23216166..23216191,+!p6@Klf9!0.18!0.97!Klf9;;chr3:133207214..133207228,-!p2@Tet2!0.18!0.83!Tet2;;chr3:29912058..29912071,-!p6@Mecom!0.18!0.69!Mecom;;chr14:75684150..75684197,+!p1@Zc3h13!0.17!42.98!Zc3h13;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.17!40.08!Zfp706;;chr1:15795720..15795756,+!p1@Terf1!0.17!38.56!Terf1;;chr12:117285924..117286018,+!p1@Zfp386!0.17!37.59!Zfp386;;chr2:165818125..165818167,+!p1@Ncoa3!0.17!35.52!Ncoa3;;chr10:22451112..22451136,-!p1@Tbpl1!0.17!31.79!Tbpl1;;chr4:102787007..102787050,+!p1@Mier1!0.17!21.14!Mier1;;chr17:21625946..21626024,+!p1@Zfp53!0.17!13.96!Zfp53;;chr8:108939219..108939296,+!p1@Zfp90!0.17!13.54!Zfp90;;chr9:113840108..113840184,+!p2@Ubp1!0.17!11.75!Ubp1;;chr8:124900576..124900601,+!p2@Zc3h18!0.17!5.39!Zc3h18;;chr12:77470507..77470572,-!p2@Zbtb25!0.17!4.42!Zbtb25;;chr14:52898807..52898863,+!p2@Tox4!0.17!3.18!Tox4;;chr1:138521574..138521597,+!p3@Zfp281!0.17!2.35!Zfp281;; | ||
Line 40: | Line 43: | ||
|is_a=EFO:0002091;;FF:0000021;;FF:0000103 | |is_a=EFO:0002091;;FF:0000021;;FF:0000103 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12536 | |||
|library_id_phase_based=2:CNhs12536 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;12127 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;12127 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep3.CNhs12536.12127-128D3.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep3.CNhs12536.12127-128D3.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep3.CNhs12536.12127-128D3.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep3.CNhs12536.12127-128D3.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep3.CNhs12536.12127-128D3.mm9.nobarcode.rdna.fa.gz | |||
|name=stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3 | |name=stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12536,LSID920,release012,COMPLETED | |profile_hcage=CNhs12536,LSID920,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.089686310701852,0,0,0,0.105986777695408,0,-0.140425304415395,0,0,0,0,-0.0843392403965415,0,0,0,0,0.052993388847704,0,-0.0859065731871663,0,0.114071786979541,0,0,0,0,0,0,0,0,0,0,0,-0.070860287599356,0,0,0,0,0,0.0516953747712841,-0.0827861207422691,-0.062922129220496,-0.984211366477826,-0.0417250640512691,0,0,0,0,0,0,0,0,0,0,0,0,-0.00978697628638479,0,0,0,0,0,0,-0.0166247784712456,0,0.105986777695408,0,-0.117389802908326,0.196016641119445,-0.101872471494027,-0.0451299367301466,0,0,-0.0760168881589905,0,0.262261155392021,0,-0.0529446460269506,-0.153063719310393,-0.539696309463514,0.0718020347797121,0,0,0,0,0,0,-0.263779565128373,-0.800642480914088,-0.194486187421589,0,0,0,0,0 | |repeat_enrich_byfamily=-0.089686310701852,0,0,0,0.105986777695408,0,-0.140425304415395,0,0,0,0,-0.0843392403965415,0,0,0,0,0.052993388847704,0,-0.0859065731871663,0,0.114071786979541,0,0,0,0,0,0,0,0,0,0,0,-0.070860287599356,0,0,0,0,0,0.0516953747712841,-0.0827861207422691,-0.062922129220496,-0.984211366477826,-0.0417250640512691,0,0,0,0,0,0,0,0,0,0,0,0,-0.00978697628638479,0,0,0,0,0,0,-0.0166247784712456,0,0.105986777695408,0,-0.117389802908326,0.196016641119445,-0.101872471494027,-0.0451299367301466,0,0,-0.0760168881589905,0,0.262261155392021,0,-0.0529446460269506,-0.153063719310393,-0.539696309463514,0.0718020347797121,0,0,0,0,0,0,-0.263779565128373,-0.800642480914088,-0.194486187421589,0,0,0,0,0 | ||
Line 61: | Line 75: | ||
|rna_weight_ug=1.02124 | |rna_weight_ug=1.02124 | ||
|sample_age=9-10weeks | |sample_age=9-10weeks | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 96: | ||
|top_motifs=ATF4:3.21825584306;CREB1:3.17266667237;NFKB1_REL_RELA:3.1670006629;NFE2:2.84867132623;ATF5_CREB3:2.66928321769;RUNX1..3:2.65626542057;FOS_FOS{B,L1}_JUN{B,D}:2.42194404835;SPI1:2.35575482935;BACH2:2.35016038725;ETS1,2:2.20649477535;ELF1,2,4:2.20088510608;PAX8:2.19028595043;DMAP1_NCOR{1,2}_SMARC:2.18326571866;SPIB:2.16106785997;BPTF:2.10447400534;bHLH_family:1.97957611771;POU2F1..3:1.88078321102;PAX2:1.76138128449;FOXP3:1.56108613151;FOX{I1,J2}:1.51344468775;FOX{D1,D2}:1.3540285215;E2F1..5:1.34947283467;SPZ1:1.31040712959;IRF1,2:1.30312547687;NFATC1..3:1.23621165192;MYB:1.15408004231;PPARG:1.14983036901;FOSL2:1.10816210419;NFE2L1:1.09680209776;ALX4:1.08328929156;YY1:1.08255577658;CEBPA,B_DDIT3:1.07554634604;TBX4,5:1.02416831796;ELK1,4_GABP{A,B1}:1.0235098057;ZNF384:0.80476763471;ATF6:0.705187166348;IRF7:0.698628490668;JUN:0.690491082095;NANOG{mouse}:0.605909883727;STAT2,4,6:0.543950475123;PBX1:0.511811020451;TFDP1:0.511139869055;AIRE:0.504996832952;NKX6-1,2:0.464442679325;HMX1:0.462255516894;POU5F1:0.452473925256;HLF:0.387602136823;ATF2:0.351090634535;ALX1:0.337960570096;ZBTB16:0.316899964079;SREBF1,2:0.306313526002;NFIL3:0.305327093793;NANOG:0.302293646732;FOXN1:0.290855381597;SOX2:0.287131632007;FOXD3:0.217278108411;NFY{A,B,C}:0.21159213069;TP53:0.197884219864;EGR1..3:0.14922806395;HIF1A:0.134327476537;IKZF2:0.111177749568;AHR_ARNT_ARNT2:0.10067227464;TLX2:0.0776851882253;FOXQ1:0.0287812643132;TEF:0.0257875820095;HBP1_HMGB_SSRP1_UBTF:0.0200122793827;SOX17:-0.000226334738016;STAT1,3:-0.0221361509863;NR6A1:-0.0283184999584;PDX1:-0.0357439615669;RFX2..5_RFXANK_RFXAP:-0.0702030997535;GATA6:-0.0958815557005;TBP:-0.102618675036;ZNF148:-0.11994060792;STAT5{A,B}:-0.12871028268;NFE2L2:-0.13135841139;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.147292750329;PITX1..3:-0.147617670415;CRX:-0.173020880643;SP1:-0.173698675052;FOXL1:-0.180549085312;RXR{A,B,G}:-0.183096954707;MEF2{A,B,C,D}:-0.239140936819;NKX2-2,8:-0.251114697757;AR:-0.255537017654;FOXO1,3,4:-0.271916863557;MTF1:-0.297183083241;TFCP2:-0.324811329835;PAX5:-0.364321832483;NRF1:-0.375033106119;ZIC1..3:-0.38280753837;RORA:-0.397896088142;CDC5L:-0.401027302416;HSF1,2:-0.404017281884;SRF:-0.412532394645;FOX{F1,F2,J1}:-0.422137902445;RFX1:-0.422249487782;ONECUT1,2:-0.439984334467;FOXP1:-0.449742068477;ESR1:-0.460408137346;CDX1,2,4:-0.463955686196;CUX2:-0.481295262235;ARID5B:-0.485917132986;BREu{core}:-0.500124612627;MTE{core}:-0.508008452476;PRDM1:-0.515636642768;GATA4:-0.527250179672;TFAP2B:-0.551906452798;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.553742011165;RXRA_VDR{dimer}:-0.559392711969;MAFB:-0.563408857303;PAX1,9:-0.565352933242;ESRRA:-0.570722756104;MED-1{core}:-0.584137326381;MYOD1:-0.586145460277;ZNF143:-0.589360481717;NKX2-3_NKX2-5:-0.603422906794;NR1H4:-0.608150972782;DBP:-0.631820038399;PAX4:-0.637966256219;ZFP161:-0.657624396754;NR5A1,2:-0.675915770139;TFAP2{A,C}:-0.683236543251;EVI1:-0.697604032424;HNF4A_NR2F1,2:-0.719503607606;PAX6:-0.720278078845;HES1:-0.727621440003;HNF1A:-0.73187348813;MZF1:-0.773625513679;HOX{A4,D4}:-0.775570631463;ZBTB6:-0.797793045348;NHLH1,2:-0.803909821594;MYFfamily:-0.806761643471;LMO2:-0.812910366089;NFIX:-0.834305544014;REST:-0.837500480177;XCPE1{core}:-0.857126902064;EBF1:-0.859627004167;PRRX1,2:-0.867502535439;ZNF238:-0.883758225456;OCT4_SOX2{dimer}:-0.88485651954;ZEB1:-0.885011413113;EN1,2:-0.916452485606;GFI1:-0.921322354961;SNAI1..3:-0.927381182148;EP300:-0.933718098159;RREB1:-0.96302545801;TGIF1:-0.968233380338;SOX5:-0.993316931812;FOXA2:-1.00270320214;SOX{8,9,10}:-1.02689459716;HIC1:-1.07581323181;LEF1_TCF7_TCF7L1,2:-1.08522267383;NR3C1:-1.08830548112;SMAD1..7,9:-1.10229766009;LHX3,4:-1.1056397418;HAND1,2:-1.11264908648;POU1F1:-1.12462127151;POU3F1..4:-1.12557501337;MAZ:-1.15053211524;MYBL2:-1.1860445695;NKX2-1,4:-1.20750519256;GTF2A1,2:-1.20797471338;RBPJ:-1.22535155286;GLI1..3:-1.22646312525;T:-1.22926147422;GTF2I:-1.34284579331;HOX{A5,B5}:-1.35692154169;VSX1,2:-1.3632213163;POU6F1:-1.37099338964;UFEwm:-1.38559121723;PATZ1:-1.4086079749;GZF1:-1.42267985015;TEAD1:-1.46638272614;TLX1..3_NFIC{dimer}:-1.48366014278;ZNF423:-1.48914701713;FOXM1:-1.51881249485;GCM1,2:-1.51989165291;TFAP4:-1.57340533378;TOPORS:-1.6174462329;GFI1B:-1.65059499666;ADNP_IRX_SIX_ZHX:-1.65758687916;KLF4:-1.66418263213;NKX3-1:-1.70886535915;HOXA9_MEIS1:-1.73678381333;TAL1_TCF{3,4,12}:-2.00216071928;HMGA1,2:-2.09779540001;IKZF1:-2.16911058439;NKX3-2:-2.3969849572 | |top_motifs=ATF4:3.21825584306;CREB1:3.17266667237;NFKB1_REL_RELA:3.1670006629;NFE2:2.84867132623;ATF5_CREB3:2.66928321769;RUNX1..3:2.65626542057;FOS_FOS{B,L1}_JUN{B,D}:2.42194404835;SPI1:2.35575482935;BACH2:2.35016038725;ETS1,2:2.20649477535;ELF1,2,4:2.20088510608;PAX8:2.19028595043;DMAP1_NCOR{1,2}_SMARC:2.18326571866;SPIB:2.16106785997;BPTF:2.10447400534;bHLH_family:1.97957611771;POU2F1..3:1.88078321102;PAX2:1.76138128449;FOXP3:1.56108613151;FOX{I1,J2}:1.51344468775;FOX{D1,D2}:1.3540285215;E2F1..5:1.34947283467;SPZ1:1.31040712959;IRF1,2:1.30312547687;NFATC1..3:1.23621165192;MYB:1.15408004231;PPARG:1.14983036901;FOSL2:1.10816210419;NFE2L1:1.09680209776;ALX4:1.08328929156;YY1:1.08255577658;CEBPA,B_DDIT3:1.07554634604;TBX4,5:1.02416831796;ELK1,4_GABP{A,B1}:1.0235098057;ZNF384:0.80476763471;ATF6:0.705187166348;IRF7:0.698628490668;JUN:0.690491082095;NANOG{mouse}:0.605909883727;STAT2,4,6:0.543950475123;PBX1:0.511811020451;TFDP1:0.511139869055;AIRE:0.504996832952;NKX6-1,2:0.464442679325;HMX1:0.462255516894;POU5F1:0.452473925256;HLF:0.387602136823;ATF2:0.351090634535;ALX1:0.337960570096;ZBTB16:0.316899964079;SREBF1,2:0.306313526002;NFIL3:0.305327093793;NANOG:0.302293646732;FOXN1:0.290855381597;SOX2:0.287131632007;FOXD3:0.217278108411;NFY{A,B,C}:0.21159213069;TP53:0.197884219864;EGR1..3:0.14922806395;HIF1A:0.134327476537;IKZF2:0.111177749568;AHR_ARNT_ARNT2:0.10067227464;TLX2:0.0776851882253;FOXQ1:0.0287812643132;TEF:0.0257875820095;HBP1_HMGB_SSRP1_UBTF:0.0200122793827;SOX17:-0.000226334738016;STAT1,3:-0.0221361509863;NR6A1:-0.0283184999584;PDX1:-0.0357439615669;RFX2..5_RFXANK_RFXAP:-0.0702030997535;GATA6:-0.0958815557005;TBP:-0.102618675036;ZNF148:-0.11994060792;STAT5{A,B}:-0.12871028268;NFE2L2:-0.13135841139;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.147292750329;PITX1..3:-0.147617670415;CRX:-0.173020880643;SP1:-0.173698675052;FOXL1:-0.180549085312;RXR{A,B,G}:-0.183096954707;MEF2{A,B,C,D}:-0.239140936819;NKX2-2,8:-0.251114697757;AR:-0.255537017654;FOXO1,3,4:-0.271916863557;MTF1:-0.297183083241;TFCP2:-0.324811329835;PAX5:-0.364321832483;NRF1:-0.375033106119;ZIC1..3:-0.38280753837;RORA:-0.397896088142;CDC5L:-0.401027302416;HSF1,2:-0.404017281884;SRF:-0.412532394645;FOX{F1,F2,J1}:-0.422137902445;RFX1:-0.422249487782;ONECUT1,2:-0.439984334467;FOXP1:-0.449742068477;ESR1:-0.460408137346;CDX1,2,4:-0.463955686196;CUX2:-0.481295262235;ARID5B:-0.485917132986;BREu{core}:-0.500124612627;MTE{core}:-0.508008452476;PRDM1:-0.515636642768;GATA4:-0.527250179672;TFAP2B:-0.551906452798;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.553742011165;RXRA_VDR{dimer}:-0.559392711969;MAFB:-0.563408857303;PAX1,9:-0.565352933242;ESRRA:-0.570722756104;MED-1{core}:-0.584137326381;MYOD1:-0.586145460277;ZNF143:-0.589360481717;NKX2-3_NKX2-5:-0.603422906794;NR1H4:-0.608150972782;DBP:-0.631820038399;PAX4:-0.637966256219;ZFP161:-0.657624396754;NR5A1,2:-0.675915770139;TFAP2{A,C}:-0.683236543251;EVI1:-0.697604032424;HNF4A_NR2F1,2:-0.719503607606;PAX6:-0.720278078845;HES1:-0.727621440003;HNF1A:-0.73187348813;MZF1:-0.773625513679;HOX{A4,D4}:-0.775570631463;ZBTB6:-0.797793045348;NHLH1,2:-0.803909821594;MYFfamily:-0.806761643471;LMO2:-0.812910366089;NFIX:-0.834305544014;REST:-0.837500480177;XCPE1{core}:-0.857126902064;EBF1:-0.859627004167;PRRX1,2:-0.867502535439;ZNF238:-0.883758225456;OCT4_SOX2{dimer}:-0.88485651954;ZEB1:-0.885011413113;EN1,2:-0.916452485606;GFI1:-0.921322354961;SNAI1..3:-0.927381182148;EP300:-0.933718098159;RREB1:-0.96302545801;TGIF1:-0.968233380338;SOX5:-0.993316931812;FOXA2:-1.00270320214;SOX{8,9,10}:-1.02689459716;HIC1:-1.07581323181;LEF1_TCF7_TCF7L1,2:-1.08522267383;NR3C1:-1.08830548112;SMAD1..7,9:-1.10229766009;LHX3,4:-1.1056397418;HAND1,2:-1.11264908648;POU1F1:-1.12462127151;POU3F1..4:-1.12557501337;MAZ:-1.15053211524;MYBL2:-1.1860445695;NKX2-1,4:-1.20750519256;GTF2A1,2:-1.20797471338;RBPJ:-1.22535155286;GLI1..3:-1.22646312525;T:-1.22926147422;GTF2I:-1.34284579331;HOX{A5,B5}:-1.35692154169;VSX1,2:-1.3632213163;POU6F1:-1.37099338964;UFEwm:-1.38559121723;PATZ1:-1.4086079749;GZF1:-1.42267985015;TEAD1:-1.46638272614;TLX1..3_NFIC{dimer}:-1.48366014278;ZNF423:-1.48914701713;FOXM1:-1.51881249485;GCM1,2:-1.51989165291;TFAP4:-1.57340533378;TOPORS:-1.6174462329;GFI1B:-1.65059499666;ADNP_IRX_SIX_ZHX:-1.65758687916;KLF4:-1.66418263213;NKX3-1:-1.70886535915;HOXA9_MEIS1:-1.73678381333;TAL1_TCF{3,4,12}:-2.00216071928;HMGA1,2:-2.09779540001;IKZF1:-2.16911058439;NKX3-2:-2.3969849572 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:12127-128D3;search_select_hide=table117:12127-128D3 | |||
}} | }} |
Latest revision as of 18:31, 4 June 2020
Name: | stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs12536 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs12536
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | -0.0355 |
1001 | -0.0749 |
1002 | -0.116 |
1003 | -0.155 |
1004 | 0 |
1005 | 0.151 |
1006 | -0.13 |
1007 | -0.16 |
1008 | 0 |
1009 | -0.094 |
101 | 0.222 |
1010 | 0 |
1011 | 0.0431 |
1012 | 0 |
1013 | -0.118 |
1014 | -0.0874 |
1015 | -0.00896 |
1016 | -0.332 |
1017 | 0 |
1018 | 0.0318 |
1019 | 0 |
102 | 0.106 |
1020 | 0.0562 |
1021 | 0 |
1022 | -0.0428 |
1023 | 0.715 |
1024 | 1.013 |
1025 | -0.0611 |
1026 | 0 |
1027 | -0.048 |
1028 | 0 |
1029 | -0.0709 |
103 | -0.0887 |
1030 | 0 |
1031 | -0.855 |
1032 | -0.184 |
1033 | 0.151 |
1034 | 0 |
1035 | 0 |
1036 | 0.376 |
1037 | 0 |
1038 | -0.221 |
1039 | -0.0727 |
104 | 0 |
1040 | -0.121 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12536
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12536
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.926 |
10 | 10 | 0.233 |
100 | 100 | 0.988 |
101 | 101 | 0.709 |
102 | 102 | 0.783 |
103 | 103 | 0.368 |
104 | 104 | 0.694 |
105 | 105 | 0.598 |
106 | 106 | 0.0642 |
107 | 107 | 0.63 |
108 | 108 | 0.769 |
109 | 109 | 0.635 |
11 | 11 | 0.966 |
110 | 110 | 0.764 |
111 | 111 | 0.936 |
112 | 112 | 0.23 |
113 | 113 | 0.743 |
114 | 114 | 0.178 |
115 | 115 | 0.82 |
116 | 116 | 0.555 |
117 | 117 | 1.3316e-4 |
118 | 118 | 0.142 |
119 | 119 | 0.69 |
12 | 12 | 0.545 |
120 | 120 | 0.359 |
121 | 121 | 0.204 |
122 | 122 | 0.582 |
123 | 123 | 0.207 |
124 | 124 | 0.397 |
125 | 125 | 0.904 |
126 | 126 | 0.74 |
127 | 127 | 0.942 |
128 | 128 | 0.128 |
129 | 129 | 0.656 |
13 | 13 | 0.00301 |
130 | 130 | 0.67 |
131 | 131 | 0.145 |
132 | 132 | 0.43 |
133 | 133 | 0.148 |
134 | 134 | 0.811 |
135 | 135 | 0.568 |
136 | 136 | 0.0729 |
137 | 137 | 0.00552 |
138 | 138 | 0.975 |
139 | 139 | 0.604 |
14 | 14 | 0.513 |
140 | 140 | 0.757 |
141 | 141 | 0.485 |
142 | 142 | 0.524 |
143 | 143 | 0.31 |
144 | 144 | 0.926 |
145 | 145 | 0.548 |
146 | 146 | 0.538 |
147 | 147 | 0.696 |
148 | 148 | 0.173 |
149 | 149 | 0.199 |
15 | 15 | 0.171 |
150 | 150 | 0.781 |
151 | 151 | 0.644 |
152 | 152 | 0.154 |
153 | 153 | 0.233 |
154 | 154 | 0.707 |
155 | 155 | 0.628 |
156 | 156 | 0.0754 |
157 | 157 | 0.882 |
158 | 158 | 0.026 |
159 | 159 | 0.724 |
160 | 160 | 0.0741 |
161 | 161 | 0.473 |
162 | 162 | 0.441 |
163 | 163 | 0.0715 |
164 | 164 | 0.0502 |
165 | 165 | 0.159 |
166 | 166 | 0.183 |
167 | 167 | 0.385 |
168 | 168 | 0.183 |
169 | 169 | 0.191 |
17 | 17 | 0.817 |
18 | 18 | 0.892 |
19 | 19 | 0.0922 |
2 | 2 | 0.0175 |
20 | 20 | 0.0217 |
21 | 21 | 0.77 |
22 | 22 | 0.936 |
23 | 23 | 0.437 |
24 | 24 | 0.0607 |
25 | 25 | 0.661 |
26 | 26 | 0.0918 |
27 | 27 | 0.439 |
28 | 28 | 0.602 |
29 | 29 | 0.213 |
3 | 3 | 0.541 |
30 | 30 | 0.213 |
31 | 31 | 0.489 |
32 | 32 | 0.032 |
33 | 33 | 0.158 |
34 | 34 | 0.73 |
35 | 35 | 0.827 |
36 | 36 | 0.258 |
37 | 37 | 0.0627 |
38 | 38 | 0.672 |
39 | 39 | 0.348 |
4 | 4 | 0.461 |
40 | 40 | 0.438 |
41 | 41 | 0.0732 |
42 | 42 | 0.559 |
43 | 43 | 0.899 |
44 | 44 | 0.931 |
45 | 45 | 0.739 |
46 | 46 | 0.967 |
47 | 47 | 0.672 |
48 | 48 | 0.728 |
49 | 49 | 0.959 |
5 | 5 | 0.91 |
50 | 50 | 0.642 |
51 | 51 | 0.665 |
52 | 52 | 0.732 |
53 | 53 | 0.78 |
54 | 54 | 0.58 |
55 | 55 | 0.918 |
56 | 56 | 0.906 |
57 | 57 | 0.568 |
58 | 58 | 0.273 |
59 | 59 | 0.802 |
6 | 6 | 0.87 |
60 | 60 | 0.491 |
61 | 61 | 0.301 |
62 | 62 | 0.324 |
63 | 63 | 0.56 |
64 | 64 | 0.529 |
65 | 65 | 0.949 |
66 | 66 | 0.375 |
67 | 67 | 0.841 |
68 | 68 | 0.614 |
69 | 69 | 0.601 |
7 | 7 | 0.72 |
70 | 70 | 0.51 |
71 | 71 | 0.347 |
72 | 72 | 0.431 |
73 | 73 | 0.0348 |
74 | 74 | 0.332 |
75 | 75 | 0.00883 |
76 | 76 | 0.109 |
77 | 77 | 0.00563 |
78 | 78 | 0.209 |
79 | 79 | 0.596 |
8 | 8 | 0.969 |
80 | 80 | 0.562 |
81 | 81 | 0.727 |
82 | 82 | 0.127 |
83 | 83 | 0.0114 |
84 | 84 | 0.621 |
85 | 85 | 0.101 |
86 | 86 | 0.157 |
87 | 87 | 0.0123 |
88 | 88 | 0.431 |
89 | 89 | 0.254 |
9 | 9 | 0.69 |
90 | 90 | 0.493 |
91 | 91 | 0.55 |
92 | 92 | 0.399 |
93 | 93 | 0.252 |
94 | 94 | 0.913 |
95 | 95 | 0.00232 |
96 | 96 | 0.386 |
97 | 97 | 0.906 |
98 | 98 | 0.88 |
99 | 99 | 0.0454 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12536
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000021 hematopoietic stem cell sample
FF:0000103 mouse sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000021 (hematopoietic stem cell sample)
0000103 (mouse sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA