FF:11770-123I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005278 | |||
|accession_numbers=CAGE;DRX008848;DRR009720;DRZ001145;DRZ002530;DRZ012495;DRZ013880 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002038,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0009661,UBERON:0000125,UBERON:0002950,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001893,UBERON:0001890,UBERON:0001891,UBERON:0010011,UBERON:0000454 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002038,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0009661,UBERON:0000125,UBERON:0002950,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001893,UBERON:0001890,UBERON:0001891,UBERON:0010011,UBERON:0000454 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002614 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002614 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.36!257.62!Olig1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.90!144.24!Tsc22d4;;chr17:48015839..48015915,-!p3@Foxp4!1.53!38.20!Foxp4;;chr16:91225808..91225824,+!p1@Olig2!1.53!32.85!Olig2;;chr7:116154364..116154444,+!p1@Tub!1.47!47.83!Tub;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.47!35.45!Pou3f3;;chr3:95032091..95032183,-!p1@Mllt11!1.45!225.22!Mllt11;;chr12:30219426..30219506,+!p2@Myt1l!1.39!23.53!Myt1l;;chr4:58956447..58956510,+!p1@Zkscan16!1.38!49.20!Zkscan16;;chr10:67375368..67375433,-!p1@Zfp365!1.36!37.89!Zfp365;;chr18:36441119..36441158,+!p2@Pura!1.35!51.65!Pura;;chrX:34442872..34442899,-!p1@Nkrf!1.34!26.74!Nkrf;;chr7:146768691..146768707,-!p1@Nkx6-2!1.34!20.93!Nkx6-2;;chr15:76353005..76353021,-!p2@Scrt1!1.34!20.63!Scrt1;;chr2:163051181..163051205,+!p2@Tox2!1.32!19.71!Tox2;;chr2:65683890..65683907,+!p1@Csrnp3!1.31!37.13!Csrnp3;;chr4:150482563..150482655,-!p2@Camta1!1.29!64.33!Camta1;;chr17:25707623..25707639,-!p1@Sox8!1.28!75.02!Sox8;;chr19:19185671..19185693,-!p1@Rorb!1.28!42.17!Rorb;;chr7:148008023..148008092,-!p1@Zfp941!1.25!40.34!Zfp941;;chr10:67375146..67375208,-!p2@Zfp365!1.22!23.84!Zfp365;;chr8:24780125..24780143,+!p1@Zmat4!1.22!22.31!Zmat4;;chr11:98190918..98190951,-!p1@Neurod2!1.22!15.43!Neurod2;;chr12:54349410..54349461,+!p1@Npas3!1.20!17.72!Npas3;;chr14:122874619..122874634,+!p1@Zic2!1.20!14.82!Zic2;;chr2:168427068..168427115,-!p3@Nfatc2!1.20!14.67!Nfatc2;;chr16:91270091..91270143,+!p2@Olig1!1.17!13.90!Olig1;;chr15:76352434..76352488,-!p4@Scrt1!1.16!13.60!Scrt1;;chr15:78994907..78994926,-!p1@Sox10!1.15!33.31!Sox10;;chr4:154335024..154335039,+!p1@Hes5!1.14!15.43!Hes5;;chr9:91260594..91260612,-!p1@Zic1!1.14!12.84!Zic1;;chr6:55631042..55631102,-!p1@Neurod6!1.13!12.38!Neurod6;;chr7:52960700..52960719,+!p2@Dbp!1.12!14.97!Dbp;;chr4:150513630..150513686,-!p4@Camta1!1.12!14.06!Camta1;;chr2:127347067..127347093,-!p1@Kcnip3!1.10!19.41!Kcnip3;;chr5:98609885..98609900,+!p1@Prdm8!1.10!11.46!Prdm8;;chr3:95032197..95032208,-!p3@Mllt11!1.08!13.90!Mllt11;;chrX:108009761..108009788,+!p1@Pou3f4!1.08!11.15!Pou3f4;;chr8:107793688..107793736,+!p1@Hsf4!1.07!13.90!Hsf4;;chr1:6477388..6477419,+!p3@St18!1.06!10.39!St18;;chr9:91260616..91260653,-!p2@Zic1!1.05!10.24!Zic1;;chr3:34548909..34548927,+!p1@Sox2!1.03!16.81!Sox2;;chrX:90531838..90531861,+!p1@Arx!1.02!12.07!Arx;;chr10:84218800..84218829,+!p2@Rfx4!1.02!9.47!Rfx4;;chr3:95032184..95032195,-!p4@Mllt11!1.01!11.46!Mllt11;;chr3:95032213..95032226,-!p6@Mllt11!1.01!11.15!Mllt11;;chr2:163030219..163030258,+!p5@Tox2!1.01!9.17!Tox2;;chr7:52960555..52960662,+!p1@Dbp!0.99!76.40!Dbp;;chr6:145814003..145814056,-!p1@Bhlhe41!0.99!25.67!Bhlhe41;;chr16:91225654..91225671,+!p2@Olig2!0.99!8.71!Olig2;;chr11:90251852..90251855,-!p4@Hlf!0.98!10.54!Hlf;;chr11:84339016..84339044,-!p1@Lhx1!0.98!8.56!Lhx1;;chr15:76352677..76352737,-!p3@Scrt1!0.98!8.56!Scrt1;;chr6:145813905..145813932,-!p2@Bhlhe41!0.97!16.04!Bhlhe41;;chr13:72766250..72766273,+!p1@Irx2!0.97!13.14!Irx2;;chr14:34791937..34791977,-!p1@Zfp488!0.97!8.40!Zfp488;;chr6:134780163..134780197,+!p2@Crebl2!0.96!19.56!Crebl2;;chr13:99124189..99124205,+!p1@Foxd1!0.96!12.53!Foxd1;;chr12:72149325..72149343,+!p2@Arid4a!0.96!11.61!Arid4a;;chrX:34442842..34442866,-!p3@Nkrf!0.96!8.10!Nkrf;;chr11:98636531..98636559,-!p1@Nr1d1!0.95!47.06!Nr1d1;;chr7:91558392..91558434,-!p1@Arnt2!0.95!22.61!Arnt2;;chr8:112603658..112603674,+!p2@Zfp612!0.94!14.67!Zfp612;;chr12:30213247..30213333,+!p1@Myt1l!0.92!7.33!Myt1l;;chr4:150482353..150482386,-!p6@Camta1!0.92!7.33!Camta1;;chr3:95032515..95032553,-!p5@Mllt11!0.91!8.56!Mllt11;;chrX:137083127..137083138,-!p9@Tsc22d3!0.91!7.18!Tsc22d3;;chr3:95032558..95032641,-!p2@Mllt11!0.90!40.95!Mllt11;;chr11:96685444..96685473,-!p5@Nfe2l1!0.90!7.03!Nfe2l1;;chr7:91558472..91558512,-!p2@Arnt2!0.89!9.93!Arnt2;;chr15:82742573..82742620,-!p2@Tcf20!0.89!6.72!Tcf20;;chr3:101814061..101814094,+!p1@Nhlh2!0.88!6.57!Nhlh2;;chr2:163030186..163030204,+!p4@Tox2!0.88!6.57!Tox2;;chr11:90252223..90252240,-!p1@Hlf!0.87!55.92!Hlf;;chr11:116196664..116196679,-!p1@Foxj1!0.87!10.24!Foxj1;;chr2:38206744..38206766,+!p1@Lhx2!0.87!7.79!Lhx2;;chr7:52960663..52960677,+!p6@Dbp!0.87!6.42!Dbp;;chr15:103170533..103170556,-!p1@Zfp385a!0.86!24.29!Zfp385a;;chr10:84218895..84218909,+!p1@Rfx4!0.86!6.26!Rfx4;;chr8:12395603..12395621,+!p1@Sox1!0.86!6.26!Sox1;;chr2:25562263..25562314,+!p2@Bmyc!0.85!25.21!Bmyc;;chr2:163030164..163030178,+!p6@Tox2!0.85!6.11!Tox2;;chr5:122499831..122499891,-!p1@Cux2!0.84!9.32!Cux2;;chr10:67375342..67375365,-!p3@Zfp365!0.84!5.96!Zfp365;;chr3:34548946..34548972,+!p2@Sox2!0.83!6.42!Sox2;;chr8:87297878..87297935,-!p3@Nfix!0.82!12.99!Nfix;;chr2:127347094..127347111,-!p2@Kcnip3!0.82!9.63!Kcnip3;;chr19:10315179..10315241,-!p1@Gm98!0.81!60.97!Gm98;;chr1:189821714..189821761,+!p1@Esrrg!0.81!10.70!Esrrg;;chr2:162769220..162769252,+!p1@L3mbtl1!0.81!5.50!L3mbtl1;;chr8:12395892..12395919,+!p4@Sox1!0.81!5.50!Sox1;;chr14:76903992..76904056,+!p6@Tsc22d1!0.80!11.46!Tsc22d1;;c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Tsc22d3!0.19!1.38!Tsc22d3;;chr8:111228161..111228183,+!p@chr8:111228161..111228183,+!0.19!1.22!Zfhx3;;chr15:102865048..102865073,+!p3@Hoxc4!0.19!0.92!Hoxc4;;chr11:112643496..112643562,+!p1@Sox9!0.18!51.34!Sox9;;chr17:33766023..33766059,+!p1@Zfp414!0.18!20.02!Zfp414;;chr15:81494344..81494388,+!p1@L3mbtl2!0.18!15.43!L3mbtl2;;chr2:181100122..181100143,+!p2@Zgpat!0.18!12.53!Zgpat;;chr19:12870598..12870636,-!p1@U05342,p1@Zfp91!0.18!6.26!Zfp91;;chr11:62602904..62602945,-!p1@Zfp286!0.18!5.65!Zfp286;;chr18:65741358..65741415,+!p1@Zfp532!0.18!5.20!Zfp532;;chr6:97757008..97757061,+!p1@Mitf!0.18!5.04!Mitf;;chr3:89197551..89197606,-!p2@Zbtb7b!0.18!3.97!Zbtb7b;;chr19:8876976..8877011,+!p1@Zbtb3!0.18!3.82!Zbtb3;;chr6:14851287..14851342,+!p1@Foxp2!0.18!3.67!Foxp2;;chr14:17407970..17408015,-!p2@Rarb!0.18!2.90!Rarb;;chr5:34530277..34530292,-!p3@Mxd4!0.18!2.75!Mxd4;;chr2:48805065..48805076,+!p4@Mbd5!0.18!2.60!Mbd5;;chr4:87678743..87678767,-!p7@Mllt3!0.18!2.44!Mllt3;;chr4:62626682..62626705,+!p2@Zfp618!0.18!2.29!Zfp618;;chr12:9581284..9581303,+!p2@Osr1!0.18!1.83!Osr1;;chr18:3337465..3337498,-!p6@Crem!0.18!1.83!Crem;;chr7:25862363..25862382,+!p2@Zfp574!0.18!1.68!Zfp574;;chr4:151235776..151235788,-!p5@Camta1!0.18!1.53!Camta1;;chr18:14131045..14131062,-!p3@Zfp521!0.18!1.38!Zfp521;;chr14:65568567..65568588,-!p3@Hmbox1!0.18!1.22!Hmbox1;;chr17:87153505..87153516,+!p6@Epas1!0.18!1.07!Epas1;;chrX:45245621..45245632,-!p3@Smarca1!0.18!1.07!Smarca1;;chr8:73905967..73905978,-!p4@Nr2f6!0.18!0.76!Nr2f6;;chr6:15135439..15135452,+!p13@Foxp2!0.18!0.76!Foxp2;;chr11:100800901..100800921,-!p4@Stat3!0.18!0.76!Stat3;;chr16:43510301..43510313,+!p24@Zbtb20!0.18!0.76!Zbtb20;;chr7:77505617..77505632,-!p1@Nr2f2!0.17!61.58!Nr2f2;;chr5:125343044..125343141,+!p1@Zfp664!0.17!57.30!Zfp664;;chr11:53164236..53164284,+!p1@Aff4!0.17!38.20!Aff4;;chr2:156022443..156022511,+!p1@Phf20!0.17!33.62!Phf20;;chr1:173341436..173341468,+!p1@Usf1!0.17!32.09!Usf1;;chr2:166888107..166888224,-!p1@Znfx1!0.17!18.64!Znfx1;;chr9:20189534..20189590,-!p1@Zfp560!0.17!12.84!Zfp560;;chr3:94758041..94758142,+!p1@Rfx5!0.17!11.46!Rfx5;;chr10:75495343..75495405,+!p1@Zfp280b!0.17!10.70!Zfp280b;;chr13:67601387..67601448,-!p2@Zfp58!0.17!10.39!Zfp58;;chr3:32409487..32409563,+!p1@Zfp639!0.17!9.17!Zfp639;;chr4:120488308..120488366,-!p1@Nfyc!0.17!7.03!Nfyc;;chr4:102787317..102787364,+!p3@Mier1!0.17!7.03!Mier1;;chr15:76287876..76287894,+!p1@Scx!0.17!6.57!Scx;;chr7:13466514..13466553,+!p1@Zfp128!0.17!5.65!Zfp128;;chr13:67552527..67552574,-!p1@Zfp874a!0.17!5.20!Zfp874a;;chr19:28085586..28085622,-!p3@Rfx3!0.17!5.04!Rfx3;;chr15:75799717..75799742,+!p1@Zfp707!0.17!4.58!Zfp707;;chr7:29551464..29551487,-!p2@Nfkbib!0.17!4.43!Nfkbib;;chr9:19426741..19426775,+!p2@Zfp317!0.17!3.51!Zfp317;;chr11:101646566..101646603,-!p1@Etv4!0.17!3.51!Etv4;;chr11:98789099..98789124,+!p3@Rara!0.17!3.36!Rara;;chr17:56970339..56970428,-!p1@Rfx2!0.17!3.36!Rfx2;;chr6:48552000..48552042,+!p@chr6:48552000..48552042,+!0.17!3.21!Zfp775;;chr10:82226613..82226641,-!p4@Nfyb!0.17!2.90!Nfyb;;chr11:95170871..95170900,-!p2@Myst2!0.17!2.75!Myst2;;chr16:55973899..55973913,+!p7@Rpl24,p7@Zbtb11!0.17!2.29!Zbtb11;;chr8:112229540..112229566,+!p2@Zfp821!0.17!2.14!Zfp821;;chrX:70587989..70588000,+!p3@Zfp275!0.17!1.83!Zfp275;;chr13:55206625..55206636,+!p2@Zfp346!0.17!1.83!Zfp346;;chr15:40486754..40486771,+!p2@Zfpm2!0.17!1.53!Zfpm2;;chr4:119486912..119486954,+!p3@Hivep3!0.17!1.53!Hivep3;;chr16:42875918..42875940,+!p13@Zbtb20!0.17!1.38!Zbtb20;;chr1:179372625..179372654,+!p4@Zfp238!0.17!1.22!Zfp238;;chr7:19895384..19895399,-!p2@Fosb!0.17!1.07!Fosb;;chr5:108494686..108494701,+!p3@Mtf2!0.17!1.07!Mtf2;;chr6:47785727..47785738,+!p6@Zfp398!0.17!1.07!Zfp398;;chr13:37870253..37870272,+!p13@Rreb1!0.17!1.07!Rreb1;;chr5:22939909..22939948,+!p6@Mll5!0.17!0.92!Mll5;;chr11:98636400..98636418,-!p4@Nr1d1!0.17!0.92!Nr1d1;; | |expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.36!257.62!Olig1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.90!144.24!Tsc22d4;;chr17:48015839..48015915,-!p3@Foxp4!1.53!38.20!Foxp4;;chr16:91225808..91225824,+!p1@Olig2!1.53!32.85!Olig2;;chr7:116154364..116154444,+!p1@Tub!1.47!47.83!Tub;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.47!35.45!Pou3f3;;chr3:95032091..95032183,-!p1@Mllt11!1.45!225.22!Mllt11;;chr12:30219426..30219506,+!p2@Myt1l!1.39!23.53!Myt1l;;chr4:58956447..58956510,+!p1@Zkscan16!1.38!49.20!Zkscan16;;chr10:67375368..67375433,-!p1@Zfp365!1.36!37.89!Zfp365;;chr18:36441119..36441158,+!p2@Pura!1.35!51.65!Pura;;chrX:34442872..34442899,-!p1@Nkrf!1.34!26.74!Nkrf;;chr7:146768691..146768707,-!p1@Nkx6-2!1.34!20.93!Nkx6-2;;chr15:76353005..76353021,-!p2@Scrt1!1.34!20.63!Scrt1;;chr2:163051181..163051205,+!p2@Tox2!1.32!19.71!Tox2;;chr2:65683890..65683907,+!p1@Csrnp3!1.31!37.13!Csrnp3;;chr4:150482563..150482655,-!p2@Camta1!1.29!64.33!Camta1;;chr17:25707623..25707639,-!p1@Sox8!1.28!75.02!Sox8;;chr19:19185671..19185693,-!p1@Rorb!1.28!42.17!Rorb;;chr7:148008023..148008092,-!p1@Zfp941!1.25!40.34!Zfp941;;chr10:67375146..67375208,-!p2@Zfp365!1.22!23.84!Zfp365;;chr8:24780125..24780143,+!p1@Zmat4!1.22!22.31!Zmat4;;chr11:98190918..98190951,-!p1@Neurod2!1.22!15.43!Neurod2;;chr12:54349410..54349461,+!p1@Npas3!1.20!17.72!Npas3;;chr14:122874619..122874634,+!p1@Zic2!1.20!14.82!Zic2;;chr2:168427068..168427115,-!p3@Nfatc2!1.20!14.67!Nfatc2;;chr16:91270091..91270143,+!p2@Olig1!1.17!13.90!Olig1;;chr15:76352434..76352488,-!p4@Scrt1!1.16!13.60!Scrt1;;chr15:78994907..78994926,-!p1@Sox10!1.15!33.31!Sox10;;chr4:154335024..154335039,+!p1@Hes5!1.14!15.43!Hes5;;chr9:91260594..91260612,-!p1@Zic1!1.14!12.84!Zic1;;chr6:55631042..55631102,-!p1@Neurod6!1.13!12.38!Neurod6;;chr7:52960700..52960719,+!p2@Dbp!1.12!14.97!Dbp;;chr4:150513630..150513686,-!p4@Camta1!1.12!14.06!Camta1;;chr2:127347067..127347093,-!p1@Kcnip3!1.10!19.41!Kcnip3;;chr5:98609885..98609900,+!p1@Prdm8!1.10!11.46!Prdm8;;chr3:95032197..95032208,-!p3@Mllt11!1.08!13.90!Mllt11;;chrX:108009761..108009788,+!p1@Pou3f4!1.08!11.15!Pou3f4;;chr8:107793688..107793736,+!p1@Hsf4!1.07!13.90!Hsf4;;chr1:6477388..6477419,+!p3@St18!1.06!10.39!St18;;chr9:91260616..91260653,-!p2@Zic1!1.05!10.24!Zic1;;chr3:34548909..34548927,+!p1@Sox2!1.03!16.81!Sox2;;chrX:90531838..90531861,+!p1@Arx!1.02!12.07!Arx;;chr10:84218800..84218829,+!p2@Rfx4!1.02!9.47!Rfx4;;chr3:95032184..95032195,-!p4@Mllt11!1.01!11.46!Mllt11;;chr3:95032213..95032226,-!p6@Mllt11!1.01!11.15!Mllt11;;chr2:163030219..163030258,+!p5@Tox2!1.01!9.17!Tox2;;chr7:52960555..52960662,+!p1@Dbp!0.99!76.40!Dbp;;chr6:145814003..145814056,-!p1@Bhlhe41!0.99!25.67!Bhlhe41;;chr16:91225654..91225671,+!p2@Olig2!0.99!8.71!Olig2;;chr11:90251852..90251855,-!p4@Hlf!0.98!10.54!Hlf;;chr11:84339016..84339044,-!p1@Lhx1!0.98!8.56!Lhx1;;chr15:76352677..76352737,-!p3@Scrt1!0.98!8.56!Scrt1;;chr6:145813905..145813932,-!p2@Bhlhe41!0.97!16.04!Bhlhe41;;chr13:72766250..72766273,+!p1@Irx2!0.97!13.14!Irx2;;chr14:34791937..34791977,-!p1@Zfp488!0.97!8.40!Zfp488;;chr6:134780163..134780197,+!p2@Crebl2!0.96!19.56!Crebl2;;chr13:99124189..99124205,+!p1@Foxd1!0.96!12.53!Foxd1;;chr12:72149325..72149343,+!p2@Arid4a!0.96!11.61!Arid4a;;chrX:34442842..34442866,-!p3@Nkrf!0.96!8.10!Nkrf;;chr11:98636531..98636559,-!p1@Nr1d1!0.95!47.06!Nr1d1;;chr7:91558392..91558434,-!p1@Arnt2!0.95!22.61!Arnt2;;chr8:112603658..112603674,+!p2@Zfp612!0.94!14.67!Zfp612;;chr12:30213247..30213333,+!p1@Myt1l!0.92!7.33!Myt1l;;chr4:150482353..150482386,-!p6@Camta1!0.92!7.33!Camta1;;chr3:95032515..95032553,-!p5@Mllt11!0.91!8.56!Mllt11;;chrX:137083127..137083138,-!p9@Tsc22d3!0.91!7.18!Tsc22d3;;chr3:95032558..95032641,-!p2@Mllt11!0.90!40.95!Mllt11;;chr11:96685444..96685473,-!p5@Nfe2l1!0.90!7.03!Nfe2l1;;chr7:91558472..91558512,-!p2@Arnt2!0.89!9.93!Arnt2;;chr15:82742573..82742620,-!p2@Tcf20!0.89!6.72!Tcf20;;chr3:101814061..101814094,+!p1@Nhlh2!0.88!6.57!Nhlh2;;chr2:163030186..163030204,+!p4@Tox2!0.88!6.57!Tox2;;chr11:90252223..90252240,-!p1@Hlf!0.87!55.92!Hlf;;chr11:116196664..116196679,-!p1@Foxj1!0.87!10.24!Foxj1;;chr2:38206744..38206766,+!p1@Lhx2!0.87!7.79!Lhx2;;chr7:52960663..52960677,+!p6@Dbp!0.87!6.42!Dbp;;chr15:103170533..103170556,-!p1@Zfp385a!0.86!24.29!Zfp385a;;chr10:84218895..84218909,+!p1@Rfx4!0.86!6.26!Rfx4;;chr8:12395603..12395621,+!p1@Sox1!0.86!6.26!Sox1;;chr2:25562263..25562314,+!p2@Bmyc!0.85!25.21!Bmyc;;chr2:163030164..163030178,+!p6@Tox2!0.85!6.11!Tox2;;chr5:122499831..122499891,-!p1@Cux2!0.84!9.32!Cux2;;chr10:67375342..67375365,-!p3@Zfp365!0.84!5.96!Zfp365;;chr3:34548946..34548972,+!p2@Sox2!0.83!6.42!Sox2;;chr8:87297878..87297935,-!p3@Nfix!0.82!12.99!Nfix;;chr2:127347094..127347111,-!p2@Kcnip3!0.82!9.63!Kcnip3;;chr19:10315179..10315241,-!p1@Gm98!0.81!60.97!Gm98;;chr1:189821714..189821761,+!p1@Esrrg!0.81!10.70!Esrrg;;chr2:162769220..162769252,+!p1@L3mbtl1!0.81!5.50!L3mbtl1;;chr8:12395892..12395919,+!p4@Sox1!0.81!5.50!Sox1;;chr14:76903992..76904056,+!p6@Tsc22d1!0.80!11.46!Tsc22d1;;chr2:168427120..168427138,-!p4@Nfatc2!0.80!5.35!Nfatc2;;chr2:127347042..127347058,-!p3@Kcnip3!0.80!5.35!Kcnip3;;chr14:19071466..19071550,-!p1@Nr1d2!0.79!38.05!Nr1d2;;chr2:65768174..65768247,+!p2@Csrnp3!0.79!5.20!Csrnp3;;chr4:22415443..22415506,-!p1@Pou3f2!0.79!5.20!Pou3f2;;chr3:128902837..128902861,+!p3@Pitx2!0.79!5.20!Pitx2;;chr5:140019843..140019858,+!p2@Uncx!0.79!5.20!Uncx;;chr7:6683123..6683142,-!p1@Peg3!0.78!288.02!Peg3;;chr7:30092993..30093076,+!p1@Dpf1!0.78!9.17!Dpf1;;chr14:118636214..118636235,-!p1@Sox21!0.78!6.11!Sox21;;chr6:145813964..145813994,-!p3@Bhlhe41!0.77!6.42!Bhlhe41;;chr4:129118044..129118067,-!p1@Zbtb8b!0.77!6.26!Zbtb8b;;chr15:103164702..103164778,-!p3@Zfp385a!0.77!5.96!Zfp385a;;chr2:181501745..181501778,+!p1@Myt1!0.77!4.89!Myt1;;chr9:40682064..40682081,+!p1@Bsx!0.77!4.89!Bsx;;chr11:90250944..90250982,-!p2@Hlf!0.76!8.40!Hlf;;chr13:44936126..44936164,+!p6@Jarid2!0.76!5.65!Jarid2;;chr2:181501710..181501742,+!p2@Myt1!0.76!4.74!Myt1;;chr7:17062114..17062141,-!p1@Npas1!0.76!4.74!Npas1;;chr15:95485240..95485257,-!p1@Dbx2!0.75!4.58!Dbx2;;chr2:163028808..163028869,+!p1@Tox2!0.74!17.57!Tox2;;chr2:25562315..25562344,+!p3@Bmyc!0.74!16.35!Bmyc;;chr19:26681865..26681900,+!p6@Smarca2!0.74!14.21!Smarca2;;chr1:170361991..170362015,-!p6@Pbx1!0.74!10.85!Pbx1;;chr2:56967334..56967366,-!p1@Nr4a2!0.74!9.78!Nr4a2;;chr11:98603185..98603208,+!p1@Thra!0.73!295.66!Thra;;chr11:98603119..98603130,+!p2@Thra!0.73!41.87!Thra;;chr15:103170516..103170531,-!p2@Zfp385a!0.73!11.31!Zfp385a;;chr4:48058129..48058179,+!p2@Nr4a3!0.73!8.86!Nr4a3;;chr7:52960730..52960762,+!p3@Dbp!0.73!5.65!Dbp;;chr12:86939997..86940040,+!p4@Jdp2!0.73!4.43!Jdp2;;chr14:49287186..49287225,-!p1@Otx2!0.73!4.43!Otx2;;chr2:71367871..71367898,+!p1@Dlx1!0.73!4.43!Dlx1;;chr11:98603160..98603171,+!p3@Thra!0.72!22.31!Thra;;chr7:130644017..130644092,-!p1@Zkscan2!0.72!8.86!Zkscan2;;chr3:54559463..54559493,+!p3@Smad9!0.72!8.25!Smad9;;chr5:28492230..28492257,+!p1@En2!0.72!4.28!En2;;chrX:70656436..70656464,+!p1@Zfp92!0.72!4.28!Zfp92;;chr7:38554763..38554780,-!p1@Zfp536!0.71!7.95!Zfp536;;chr5:125342568..125342602,+!p2@Zfp664!0.71!7.18!Zfp664;;chr17:48015645..48015689,-!p9@Foxp4!0.70!5.35!Foxp4;;chr1:122498955..122498968,+!p1@En1!0.70!3.97!En1;;chr11:90252108..90252134,-!p6@Hlf!0.70!3.97!Hlf;;chr13:95645580..95645598,+!p1@Otp!0.70!3.97!Otp;;chrX:137077151..137077227,-!p2@Tsc22d3!0.69!31.02!Tsc22d3;;chr13:72766279..72766296,+!p2@Irx2!0.69!6.11!Irx2;;chr7:91558537..91558558,-!p4@Arnt2!0.69!4.89!Arnt2;;chr7:17200307..17200370,-!p2@Grlf1!0.68!31.48!Grlf1;;chr6:117813087..117813121,+!p1@Zfp239!0.68!16.04!Zfp239;;chr5:120881900..120881914,+!p1@Lhx5!0.68!3.82!Lhx5;;chr10:5636354..5636373,-!p2@Esr1!0.68!3.82!Esr1;;chr11:98190955..98190968,-!p2@Neurod2!0.68!3.82!Neurod2;;chr15:81633165..81633188,+!p2@Tef!0.67!34.53!Tef;;chr8:112603610..112603656,+!p1@Zfp612!0.67!19.10!Zfp612;;chr14:52935860..52935874,-!p3@Sall2!0.67!5.65!Sall2;;chr4:124334894..124334899,+!p1@Pou3f1!0.67!5.04!Pou3f1;;chr9:69608672..69608686,-!p1@Foxb1!0.67!3.67!Foxb1;;chr9:69608731..69608742,-!p2@Foxb1!0.67!3.67!Foxb1;;chr8:12395874..12395885,+!p2@Sox1!0.67!3.67!Sox1;;chr1:179374784..179374800,+!p2@Zfp238!0.66!4.28!Zfp238;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.65!41.87!Camta2;;chr8:125897750..125897758,+!p2@Tcf25!0.65!27.05!Tcf25;;chr8:79423144..79423178,+!p3@Nr3c2!0.65!5.04!Nr3c2;;chr10:5636374..5636421,-!p1@Esr1!0.65!4.58!Esr1;;chr12:30220074..30220102,+!p3@Myt1l!0.65!3.51!Myt1l;;chr18:66098702..66098742,-!p1@Rax!0.65!3.51!Rax;;chr17:27693525..27693538,+!p5@Hmga1!0.64!12.99!Hmga1;;chr19:19185697..19185711,-!p2@Rorb!0.64!4.43!Rorb;;chr8:79423672..79423727,+!p2@Nr3c2!0.64!4.43!Nr3c2;;chr8:107793737..107793757,+!p2@Hsf4!0.64!3.97!Hsf4;;chr11:96685487..96685512,-!p7@Nfe2l1!0.64!3.36!Nfe2l1;;chr4:149862477..149862553,+!p3@Rere!0.63!13.45!Rere;;chr16:43503493..43503570,+!p9@Zbtb20!0.63!5.96!Zbtb20;;chr15:103170561..103170572,-!p4@Zfp385a!0.63!5.04!Zfp385a;;chr13:72101161..72101177,-!p2@Irx1!0.63!4.74!Irx1;;chr12:72149359..72149406,+!p4@Arid4a!0.63!4.58!Arid4a;;chr14:52935876..52935928,-!p1@Sall2!0.62!30.56!Sall2;;chr8:72356532..72356611,+!p1@Pbx4!0.62!15.13!Pbx4;;chrX:108009734..108009752,+!p2@Pou3f4!0.62!3.21!Pou3f4;;chr14:122874593..122874610,+!p2@Zic2!0.62!3.21!Zic2;;chr1:122499088..122499099,+!p2@En1!0.62!3.21!En1;;chr3:17954392..17954407,+!p2@Bhlhe22!0.62!3.21!Bhlhe22;;chr2:81893535..81893548,+!p1@Zfp804a!0.62!3.21!Zfp804a;;chr3:34549096..34549111,+!p3@Sox2!0.62!3.21!Sox2;;chr4:22415290..22415307,-!p2@Pou3f2!0.62!3.21!Pou3f2;;chr2:71384802..71384815,-!p1@Dlx2!0.61!3.97!Dlx2;;chr7:38558574..38558611,-!p2@Zfp536!0.61!3.97!Zfp536;;chr10:67375223..67375240,-!p4@Zfp365!0.61!3.51!Zfp365;;chr11:21901608..21901634,-!p1@Otx1!0.61!3.06!Otx1;;chr11:90252071..90252093,-!p7@Hlf!0.61!3.06!Hlf;;chr7:91520922..91520956,-!p5@Arnt2!0.61!3.06!Arnt2;;chr6:85463580..85463585,-!p1@Egr4!0.61!3.06!Egr4;;chr19:5424822..5424845,-!p3@Drap1!0.60!13.90!Drap1;;chr13:78338076..78338104,-!p4@Nr2f1!0.60!3.97!Nr2f1;;chr11:69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| ||
Line 41: | Line 44: | ||
|is_a=EFO:0002091;;FF:0000208 | |is_a=EFO:0002091;;FF:0000208 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12643 | |||
|library_id_phase_based=2:CNhs12643 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11770 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11770 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520substantia%2520nigra%252c%2520donor6.CNhs12643.11770-123I6.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520substantia%2520nigra%252c%2520donor6.CNhs12643.11770-123I6.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520substantia%2520nigra%252c%2520donor6.CNhs12643.11770-123I6.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520substantia%2520nigra%252c%2520donor6.CNhs12643.11770-123I6.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520substantia%2520nigra%252c%2520donor6.CNhs12643.11770-123I6.mm9.nobarcode.rdna.fa.gz | |||
|name=Mouse Neurons - substantia nigra, donor6 | |name=Mouse Neurons - substantia nigra, donor6 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12643,LSID952,release012,COMPLETED | |profile_hcage=CNhs12643,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.0401463245787502,0,0,0,0,0,0.291404129280772,0,0,0,0,-0.0843392403965415,0,0,0,0,0.0308766538450896,0,0.0152542130952958,0,0,0,0,0,0.163875090269313,0,0,0,0,0,0,0.43895936184778,-0.394547702054718,0,0,0,0,0.0617533076901792,-0.0454476352265129,0.141134285969146,0.1041311737115,0.525308905420485,0.591350729925745,0.402774059390807,0,0,0,0,0,0,0,0,0,0,0.0617533076901792,-0.0660055475634404,0,0,0,0,-0.025895724905227,0,0.0735898329307735,0,0,0,-0.0286086612182423,-0.310650657339386,0.481550952963431,-0.0135678466607162,0,0,0.118143374211076,0.165176007583219,0.163875090269313,0,0.120990082487726,0.192133439670186,0.355690170635487,-0.0170782871497282,0,0,0,0,0,0,0.207585939426407,0.131216697174555,0.179991823420822,0,0.0617533076901792,0.428261292319165,0.430330893890267,0 | |repeat_enrich_byfamily=0.0401463245787502,0,0,0,0,0,0.291404129280772,0,0,0,0,-0.0843392403965415,0,0,0,0,0.0308766538450896,0,0.0152542130952958,0,0,0,0,0,0.163875090269313,0,0,0,0,0,0,0.43895936184778,-0.394547702054718,0,0,0,0,0.0617533076901792,-0.0454476352265129,0.141134285969146,0.1041311737115,0.525308905420485,0.591350729925745,0.402774059390807,0,0,0,0,0,0,0,0,0,0,0.0617533076901792,-0.0660055475634404,0,0,0,0,-0.025895724905227,0,0.0735898329307735,0,0,0,-0.0286086612182423,-0.310650657339386,0.481550952963431,-0.0135678466607162,0,0,0.118143374211076,0.165176007583219,0.163875090269313,0,0.120990082487726,0.192133439670186,0.355690170635487,-0.0170782871497282,0,0,0,0,0,0,0.207585939426407,0.131216697174555,0.179991823420822,0,0.0617533076901792,0.428261292319165,0.430330893890267,0 | ||
Line 83: | Line 97: | ||
|top_motifs=REST:2.72995994701;ZBTB6:2.72328419067;MTF1:2.6944485555;HAND1,2:2.17988972289;OCT4_SOX2{dimer}:2.15497278077;ZFP161:2.0746371218;PAX5:2.07276465092;MYFfamily:2.0537101963;EGR1..3:2.02821693656;KLF4:1.98902224135;LMO2:1.98002097474;ZIC1..3:1.93750145384;FOXD3:1.9318729483;TFAP2B:1.92707956663;NHLH1,2:1.89788510145;ATF2:1.88533844606;BREu{core}:1.83408375499;HIC1:1.8184567119;CUX2:1.79270848982;POU6F1:1.78937845492;MED-1{core}:1.78521382589;NFIL3:1.73747225502;FOXM1:1.69754387668;PAX4:1.67004723949;RFX1:1.6420519687;UFEwm:1.5933856444;PRRX1,2:1.55828628904;MAFB:1.45871941151;AHR_ARNT_ARNT2:1.44685777762;EVI1:1.4382630428;MTE{core}:1.42330519702;POU3F1..4:1.32492806082;NKX2-2,8:1.31770499406;PAX6:1.31398072551;ADNP_IRX_SIX_ZHX:1.20902503815;SMAD1..7,9:1.20746535222;TGIF1:1.19804104424;GTF2I:1.19154275431;VSX1,2:1.18152613104;JUN:1.18112078562;PRDM1:1.18043211308;DBP:1.17486074266;PBX1:1.16384607408;HBP1_HMGB_SSRP1_UBTF:1.15572001273;ZNF423:1.1519528065;GFI1B:1.14747098274;TFDP1:1.13592294267;RFX2..5_RFXANK_RFXAP:1.08996646788;ALX1:1.08648315168;HMGA1,2:1.06067104494;CREB1:1.06063758684;NRF1:1.05837452446;RBPJ:1.04282837435;TFAP2{A,C}:1.0378280276;ATF5_CREB3:1.02083793877;SREBF1,2:1.01228541051;IKZF1:1.01060811935;FOXN1:1.00911497081;PATZ1:0.984832092273;RREB1:0.974352631346;STAT1,3:0.954193389424;GATA4:0.938792622826;MYOD1:0.887027508341;ONECUT1,2:0.885854877612;MZF1:0.876821704892;ZEB1:0.839336499005;MAZ:0.82750857233;HOXA9_MEIS1:0.827043822172;PAX8:0.809994479496;FOX{I1,J2}:0.795590193238;LHX3,4:0.794719363142;NANOG:0.781322840634;GTF2A1,2:0.75984809042;ZNF143:0.756698105151;GZF1:0.756008766818;ARID5B:0.748933787211;HSF1,2:0.734609894229;NKX3-2:0.718989907939;CDC5L:0.707922879766;FOXP3:0.677511127618;SOX2:0.670620437032;PAX2:0.651684443649;HES1:0.643145355983;NFE2L2:0.578773662892;NFE2L1:0.524300270325;NKX6-1,2:0.521075459159;POU5F1:0.49056574372;POU1F1:0.479329671224;YY1:0.442482315113;RORA:0.430636185762;GCM1,2:0.413812482951;SOX{8,9,10}:0.40744173835;GLI1..3:0.372589770604;NR5A1,2:0.36279740663;FOXQ1:0.347069158158;ZNF384:0.321813804935;TEF:0.315914997231;SOX5:0.281558296324;TFAP4:0.277407429042;SP1:0.266030065655;FOX{F1,F2,J1}:0.234273401953;EBF1:0.201701473271;AIRE:0.170272233957;NFE2:0.16936646752;ESRRA:0.149353178471;SPZ1:0.140611055763;MYBL2:0.13989359478;HMX1:0.117488694377;CDX1,2,4:0.0888180333813;PAX1,9:0.0875302344293;ATF4:0.0742860843536;SOX17:0.0523034784133;LEF1_TCF7_TCF7L1,2:0.0393121710219;NR3C1:0.0199761277261;ZNF148:0.00571607936596;T:0.000947388874438;TAL1_TCF{3,4,12}:-0.0519817304704;ATF6:-0.0550609871518;NKX2-3_NKX2-5:-0.0637876232682;PPARG:-0.0879768465041;XCPE1{core}:-0.145774655587;RXR{A,B,G}:-0.156806149219;FOXP1:-0.158823795497;TLX1..3_NFIC{dimer}:-0.163456949753;BPTF:-0.197606670022;TFCP2:-0.203622530782;NFATC1..3:-0.2416693483;EN1,2:-0.252281495183;NKX3-1:-0.268406879496;NKX2-1,4:-0.288698432737;FOXA2:-0.293818425272;AR:-0.301560475845;SNAI1..3:-0.332267303866;bHLH_family:-0.335996899573;HOX{A4,D4}:-0.346304303105;ZBTB16:-0.346580453902;CRX:-0.366758691632;TOPORS:-0.407285661293;HIF1A:-0.409489023245;IRF7:-0.439025048542;TBX4,5:-0.445912570446;EP300:-0.476696155379;HOX{A5,B5}:-0.500982446169;MEF2{A,B,C,D}:-0.50281582151;IKZF2:-0.541824235652;FOSL2:-0.568896107688;FOXO1,3,4:-0.603865024047;ESR1:-0.605647354402;STAT2,4,6:-0.622188823179;PDX1:-0.642459227457;HLF:-0.644630866829;NR1H4:-0.64889220473;MYB:-0.659464177856;ZNF238:-0.684870687888;ELK1,4_GABP{A,B1}:-0.725524401182;NFY{A,B,C}:-0.773807446362;CEBPA,B_DDIT3:-0.779576229517;HNF4A_NR2F1,2:-0.7803186892;FOX{D1,D2}:-0.801824541714;BACH2:-0.804130930573;POU2F1..3:-0.814935715848;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.860192452449;SPI1:-0.882939508996;HNF1A:-0.888597735472;TEAD1:-0.90452335231;GATA6:-0.907710431904;RUNX1..3:-0.924679847491;IRF1,2:-0.939942284759;FOXL1:-0.959223791141;FOS_FOS{B,L1}_JUN{B,D}:-1.01991993625;NR6A1:-1.04809566519;RXRA_VDR{dimer}:-1.12974531219;TP53:-1.17328978537;NFKB1_REL_RELA:-1.218659505;ETS1,2:-1.26503613002;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.28260878481;DMAP1_NCOR{1,2}_SMARC:-1.28797092037;TBP:-1.30967478837;ELF1,2,4:-1.3937463628;SPIB:-1.41462884364;ALX4:-1.53581034488;TLX2:-1.54467290088;GFI1:-1.64162176749;PITX1..3:-1.67777688256;E2F1..5:-1.68316280936;NANOG{mouse}:-1.69116298058;NFIX:-1.72196269328;STAT5{A,B}:-1.81450939937;SRF:-1.81563336477 | |top_motifs=REST:2.72995994701;ZBTB6:2.72328419067;MTF1:2.6944485555;HAND1,2:2.17988972289;OCT4_SOX2{dimer}:2.15497278077;ZFP161:2.0746371218;PAX5:2.07276465092;MYFfamily:2.0537101963;EGR1..3:2.02821693656;KLF4:1.98902224135;LMO2:1.98002097474;ZIC1..3:1.93750145384;FOXD3:1.9318729483;TFAP2B:1.92707956663;NHLH1,2:1.89788510145;ATF2:1.88533844606;BREu{core}:1.83408375499;HIC1:1.8184567119;CUX2:1.79270848982;POU6F1:1.78937845492;MED-1{core}:1.78521382589;NFIL3:1.73747225502;FOXM1:1.69754387668;PAX4:1.67004723949;RFX1:1.6420519687;UFEwm:1.5933856444;PRRX1,2:1.55828628904;MAFB:1.45871941151;AHR_ARNT_ARNT2:1.44685777762;EVI1:1.4382630428;MTE{core}:1.42330519702;POU3F1..4:1.32492806082;NKX2-2,8:1.31770499406;PAX6:1.31398072551;ADNP_IRX_SIX_ZHX:1.20902503815;SMAD1..7,9:1.20746535222;TGIF1:1.19804104424;GTF2I:1.19154275431;VSX1,2:1.18152613104;JUN:1.18112078562;PRDM1:1.18043211308;DBP:1.17486074266;PBX1:1.16384607408;HBP1_HMGB_SSRP1_UBTF:1.15572001273;ZNF423:1.1519528065;GFI1B:1.14747098274;TFDP1:1.13592294267;RFX2..5_RFXANK_RFXAP:1.08996646788;ALX1:1.08648315168;HMGA1,2:1.06067104494;CREB1:1.06063758684;NRF1:1.05837452446;RBPJ:1.04282837435;TFAP2{A,C}:1.0378280276;ATF5_CREB3:1.02083793877;SREBF1,2:1.01228541051;IKZF1:1.01060811935;FOXN1:1.00911497081;PATZ1:0.984832092273;RREB1:0.974352631346;STAT1,3:0.954193389424;GATA4:0.938792622826;MYOD1:0.887027508341;ONECUT1,2:0.885854877612;MZF1:0.876821704892;ZEB1:0.839336499005;MAZ:0.82750857233;HOXA9_MEIS1:0.827043822172;PAX8:0.809994479496;FOX{I1,J2}:0.795590193238;LHX3,4:0.794719363142;NANOG:0.781322840634;GTF2A1,2:0.75984809042;ZNF143:0.756698105151;GZF1:0.756008766818;ARID5B:0.748933787211;HSF1,2:0.734609894229;NKX3-2:0.718989907939;CDC5L:0.707922879766;FOXP3:0.677511127618;SOX2:0.670620437032;PAX2:0.651684443649;HES1:0.643145355983;NFE2L2:0.578773662892;NFE2L1:0.524300270325;NKX6-1,2:0.521075459159;POU5F1:0.49056574372;POU1F1:0.479329671224;YY1:0.442482315113;RORA:0.430636185762;GCM1,2:0.413812482951;SOX{8,9,10}:0.40744173835;GLI1..3:0.372589770604;NR5A1,2:0.36279740663;FOXQ1:0.347069158158;ZNF384:0.321813804935;TEF:0.315914997231;SOX5:0.281558296324;TFAP4:0.277407429042;SP1:0.266030065655;FOX{F1,F2,J1}:0.234273401953;EBF1:0.201701473271;AIRE:0.170272233957;NFE2:0.16936646752;ESRRA:0.149353178471;SPZ1:0.140611055763;MYBL2:0.13989359478;HMX1:0.117488694377;CDX1,2,4:0.0888180333813;PAX1,9:0.0875302344293;ATF4:0.0742860843536;SOX17:0.0523034784133;LEF1_TCF7_TCF7L1,2:0.0393121710219;NR3C1:0.0199761277261;ZNF148:0.00571607936596;T:0.000947388874438;TAL1_TCF{3,4,12}:-0.0519817304704;ATF6:-0.0550609871518;NKX2-3_NKX2-5:-0.0637876232682;PPARG:-0.0879768465041;XCPE1{core}:-0.145774655587;RXR{A,B,G}:-0.156806149219;FOXP1:-0.158823795497;TLX1..3_NFIC{dimer}:-0.163456949753;BPTF:-0.197606670022;TFCP2:-0.203622530782;NFATC1..3:-0.2416693483;EN1,2:-0.252281495183;NKX3-1:-0.268406879496;NKX2-1,4:-0.288698432737;FOXA2:-0.293818425272;AR:-0.301560475845;SNAI1..3:-0.332267303866;bHLH_family:-0.335996899573;HOX{A4,D4}:-0.346304303105;ZBTB16:-0.346580453902;CRX:-0.366758691632;TOPORS:-0.407285661293;HIF1A:-0.409489023245;IRF7:-0.439025048542;TBX4,5:-0.445912570446;EP300:-0.476696155379;HOX{A5,B5}:-0.500982446169;MEF2{A,B,C,D}:-0.50281582151;IKZF2:-0.541824235652;FOSL2:-0.568896107688;FOXO1,3,4:-0.603865024047;ESR1:-0.605647354402;STAT2,4,6:-0.622188823179;PDX1:-0.642459227457;HLF:-0.644630866829;NR1H4:-0.64889220473;MYB:-0.659464177856;ZNF238:-0.684870687888;ELK1,4_GABP{A,B1}:-0.725524401182;NFY{A,B,C}:-0.773807446362;CEBPA,B_DDIT3:-0.779576229517;HNF4A_NR2F1,2:-0.7803186892;FOX{D1,D2}:-0.801824541714;BACH2:-0.804130930573;POU2F1..3:-0.814935715848;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.860192452449;SPI1:-0.882939508996;HNF1A:-0.888597735472;TEAD1:-0.90452335231;GATA6:-0.907710431904;RUNX1..3:-0.924679847491;IRF1,2:-0.939942284759;FOXL1:-0.959223791141;FOS_FOS{B,L1}_JUN{B,D}:-1.01991993625;NR6A1:-1.04809566519;RXRA_VDR{dimer}:-1.12974531219;TP53:-1.17328978537;NFKB1_REL_RELA:-1.218659505;ETS1,2:-1.26503613002;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.28260878481;DMAP1_NCOR{1,2}_SMARC:-1.28797092037;TBP:-1.30967478837;ELF1,2,4:-1.3937463628;SPIB:-1.41462884364;ALX4:-1.53581034488;TLX2:-1.54467290088;GFI1:-1.64162176749;PITX1..3:-1.67777688256;E2F1..5:-1.68316280936;NANOG{mouse}:-1.69116298058;NFIX:-1.72196269328;STAT5{A,B}:-1.81450939937;SRF:-1.81563336477 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11770-123I6;search_select_hide=table117:11770-123I6 | |||
}} | }} |
Latest revision as of 18:19, 4 June 2020
Name: | Mouse Neurons - substantia nigra, donor6 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs12643 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs12643
0 | 0 |
1 | 0.712 |
10 | 0 |
100 | 0 |
1000 | 0 |
1001 | 0.0932 |
1002 | 0 |
1003 | 0.118 |
1004 | 0 |
1005 | 0 |
1006 | 0.566 |
1007 | -0.0812 |
1008 | 0 |
1009 | -0.128 |
101 | -0.138 |
1010 | 0 |
1011 | 0.311 |
1012 | 0.164 |
1013 | 0.186 |
1014 | 0.152 |
1015 | -0.0629 |
1016 | -0.056 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0.574 |
1021 | 0.0131 |
1022 | 0.0688 |
1023 | 0 |
1024 | 0 |
1025 | 6.239854e-4 |
1026 | 0 |
1027 | 0.427 |
1028 | 0 |
1029 | -0.013 |
103 | -0.0709 |
1030 | 0 |
1031 | -0.374 |
1032 | 0.52 |
1033 | 0.0406 |
1034 | 0 |
1035 | 0 |
1036 | -0.183 |
1037 | 0 |
1038 | -0.04 |
1039 | 0.134 |
104 | 0 |
1040 | -0.258 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12643
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12643
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.206 |
10 | 10 | 0.0606 |
100 | 100 | 0.337 |
101 | 101 | 0.991 |
102 | 102 | 0.915 |
103 | 103 | 0.115 |
104 | 104 | 0.882 |
105 | 105 | 0.358 |
106 | 106 | 0.0466 |
107 | 107 | 0.108 |
108 | 108 | 0.499 |
109 | 109 | 0.0124 |
11 | 11 | 0.0896 |
110 | 110 | 0.0472 |
111 | 111 | 0.331 |
112 | 112 | 0.0093 |
113 | 113 | 0.664 |
114 | 114 | 0.521 |
115 | 115 | 0.675 |
116 | 116 | 0.435 |
117 | 117 | 0.00299 |
118 | 118 | 0.59 |
119 | 119 | 0.194 |
12 | 12 | 0.903 |
120 | 120 | 0.945 |
121 | 121 | 0.18 |
122 | 122 | 0.886 |
123 | 123 | 3.88617e-4 |
124 | 124 | 0.132 |
125 | 125 | 0.155 |
126 | 126 | 0.0504 |
127 | 127 | 0.46 |
128 | 128 | 0.0355 |
129 | 129 | 0.222 |
13 | 13 | 8.80261e-8 |
130 | 130 | 0.115 |
131 | 131 | 0.471 |
132 | 132 | 0.491 |
133 | 133 | 0.599 |
134 | 134 | 0.135 |
135 | 135 | 0.369 |
136 | 136 | 0.183 |
137 | 137 | 0.481 |
138 | 138 | 0.873 |
139 | 139 | 0.505 |
14 | 14 | 0.936 |
140 | 140 | 0.171 |
141 | 141 | 0.752 |
142 | 142 | 0.641 |
143 | 143 | 0.323 |
144 | 144 | 0.634 |
145 | 145 | 2.94738e-4 |
146 | 146 | 0.23 |
147 | 147 | 0.161 |
148 | 148 | 0.964 |
149 | 149 | 0.703 |
15 | 15 | 0.206 |
150 | 150 | 0.0773 |
151 | 151 | 0.881 |
152 | 152 | 0.111 |
153 | 153 | 0.618 |
154 | 154 | 0.652 |
155 | 155 | 0.343 |
156 | 156 | 0.419 |
157 | 157 | 0.101 |
158 | 158 | 0.0954 |
159 | 159 | 0.717 |
160 | 160 | 0.289 |
161 | 161 | 0.176 |
162 | 162 | 0.638 |
163 | 163 | 0.801 |
164 | 164 | 0.0308 |
165 | 165 | 0.276 |
166 | 166 | 0.513 |
167 | 167 | 0.545 |
168 | 168 | 0.533 |
169 | 169 | 0.00218 |
17 | 17 | 0.0594 |
18 | 18 | 0.813 |
19 | 19 | 0.0846 |
2 | 2 | 0.707 |
20 | 20 | 0.0475 |
21 | 21 | 0.229 |
22 | 22 | 0.139 |
23 | 23 | 0.567 |
24 | 24 | 0.069 |
25 | 25 | 0.748 |
26 | 26 | 2.3136e-8 |
27 | 27 | 0.47 |
28 | 28 | 0.721 |
29 | 29 | 0.0382 |
3 | 3 | 0.0909 |
30 | 30 | 0.833 |
31 | 31 | 0.659 |
32 | 32 | 0.821 |
33 | 33 | 0.111 |
34 | 34 | 0.728 |
35 | 35 | 0.714 |
36 | 36 | 0.2 |
37 | 37 | 0.0371 |
38 | 38 | 0.368 |
39 | 39 | 0.431 |
4 | 4 | 0.261 |
40 | 40 | 0.11 |
41 | 41 | 0.431 |
42 | 42 | 0.186 |
43 | 43 | 0.123 |
44 | 44 | 0.982 |
45 | 45 | 0.665 |
46 | 46 | 0.0444 |
47 | 47 | 0.379 |
48 | 48 | 0.25 |
49 | 49 | 0.173 |
5 | 5 | 0.191 |
50 | 50 | 0.247 |
51 | 51 | 0.739 |
52 | 52 | 0.319 |
53 | 53 | 0.641 |
54 | 54 | 0.856 |
55 | 55 | 0.907 |
56 | 56 | 0.503 |
57 | 57 | 0.625 |
58 | 58 | 0.291 |
59 | 59 | 0.179 |
6 | 6 | 0.975 |
60 | 60 | 0.0308 |
61 | 61 | 0.0548 |
62 | 62 | 0.178 |
63 | 63 | 0.152 |
64 | 64 | 0.67 |
65 | 65 | 0.333 |
66 | 66 | 0.708 |
67 | 67 | 0.817 |
68 | 68 | 0.845 |
69 | 69 | 0.586 |
7 | 7 | 0.0136 |
70 | 70 | 0.178 |
71 | 71 | 0.00293 |
72 | 72 | 0.486 |
73 | 73 | 0.0521 |
74 | 74 | 0.956 |
75 | 75 | 0.0487 |
76 | 76 | 0.422 |
77 | 77 | 0.529 |
78 | 78 | 0.00122 |
79 | 79 | 0.0224 |
8 | 8 | 0.0819 |
80 | 80 | 0.965 |
81 | 81 | 0.708 |
82 | 82 | 0.264 |
83 | 83 | 0.0658 |
84 | 84 | 0.865 |
85 | 85 | 0.163 |
86 | 86 | 0.153 |
87 | 87 | 0.282 |
88 | 88 | 0.516 |
89 | 89 | 0.619 |
9 | 9 | 0.345 |
90 | 90 | 0.202 |
91 | 91 | 0.108 |
92 | 92 | 0.413 |
93 | 93 | 0.0143 |
94 | 94 | 0.65 |
95 | 95 | 0.0633 |
96 | 96 | 0.208 |
97 | 97 | 0.889 |
98 | 98 | 0.601 |
99 | 99 | 0.491 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12643
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000208 mouse neuron of the substantia nigra sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000117 (CNS neuron (sensu Vertebrata))
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
0002614 (neuron of the substantia nigra)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002038 (substantia nigra)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0009661 (midbrain nucleus)
0000125 (neural nucleus)
0002950 (regional part of midbrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001893 (telencephalon)
0001890 (forebrain)
0001891 (midbrain)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000203 (mouse neuron samples)
0000208 (mouse neuron of the substantia nigra sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000337 (neuroblast (sensu Vertebrata))
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)