FF:11705-123B4: Difference between revisions

Latest revision as of 18:15, 4 June 2020

Name:	CD19+ B Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12354,SRhi10066.CTTGTA
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	b cell
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	3H100-500-10
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004926

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12354		CAGE		DRX008172		DRR009044

Accession ID Hg19

Library id		BAM		CTSS
CNhs12354		DRZ000469		DRZ001854

Accession ID Hg38

Library id		BAM		CTSS
CNhs12354		DRZ011819		DRZ013204

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00013695

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10066.CTTGTA		sRNA-Seq		DRX012362		DRR013810

Accession ID Hg19

Library id		BAM		CTSS
SRhi10066.CTTGTA		DRZ003011

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0387
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.218
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.464
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.869
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.141
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.377
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.464
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.616
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.594
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	1.122
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.168
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.803
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.141
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.127
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.467
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.146
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.332
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.141
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.141
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.141
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0671
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.457
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.565
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.141
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.622
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.332
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0595
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.608
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.141
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.775
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.487
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.587
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.141
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.464
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.247
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.875
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.723
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.464
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12354

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.011
MA0003.1	MA0003.1	0.428
MA0004.1	MA0004.1	0.375
MA0006.1	MA0006.1	0.0921
MA0007.1	MA0007.1	0.399
MA0009.1	MA0009.1	0.112
MA0014.1	MA0014.1	0.933
MA0017.1	MA0017.1	0.464
MA0018.2	MA0018.2	1.6977e-11
MA0019.1	MA0019.1	0.47
MA0024.1	MA0024.1	0.524
MA0025.1	MA0025.1	0.468
MA0027.1	MA0027.1	0.93
MA0028.1	MA0028.1	0.28
MA0029.1	MA0029.1	0.305
MA0030.1	MA0030.1	0.00363
MA0031.1	MA0031.1	0.00291
MA0035.2	MA0035.2	0.832
MA0038.1	MA0038.1	0.0754
MA0039.2	MA0039.2	0.656
MA0040.1	MA0040.1	0.748
MA0041.1	MA0041.1	0.192
MA0042.1	MA0042.1	0.747
MA0043.1	MA0043.1	1.47365e-5
MA0046.1	MA0046.1	0.326
MA0047.2	MA0047.2	0.339
MA0048.1	MA0048.1	0.882
MA0050.1	MA0050.1	6.85446e-9
MA0051.1	MA0051.1	0.00256
MA0052.1	MA0052.1	0.084
MA0055.1	MA0055.1	0.994
MA0057.1	MA0057.1	0.212
MA0058.1	MA0058.1	0.309
MA0059.1	MA0059.1	0.856
MA0060.1	MA0060.1	0.0149
MA0061.1	MA0061.1	3.32995e-20
MA0062.2	MA0062.2	2.98638e-6
MA0065.2	MA0065.2	0.87
MA0066.1	MA0066.1	0.852
MA0067.1	MA0067.1	2.9186e-4
MA0068.1	MA0068.1	0.247
MA0069.1	MA0069.1	0.635
MA0070.1	MA0070.1	0.461
MA0071.1	MA0071.1	0.685
MA0072.1	MA0072.1	0.654
MA0073.1	MA0073.1	0.497
MA0074.1	MA0074.1	0.915
MA0076.1	MA0076.1	0.0921
MA0077.1	MA0077.1	0.32
MA0078.1	MA0078.1	0.886
MA0079.2	MA0079.2	0.713
MA0080.2	MA0080.2	4.73527e-11
MA0081.1	MA0081.1	2.26259e-4
MA0083.1	MA0083.1	0.203
MA0084.1	MA0084.1	0.482
MA0087.1	MA0087.1	0.403
MA0088.1	MA0088.1	0.265
MA0090.1	MA0090.1	2.8539e-5
MA0091.1	MA0091.1	0.479
MA0092.1	MA0092.1	0.666
MA0093.1	MA0093.1	0.485
MA0099.2	MA0099.2	0.0158
MA0100.1	MA0100.1	0.806
MA0101.1	MA0101.1	3.60079e-17
MA0102.2	MA0102.2	0.0555
MA0103.1	MA0103.1	0.106
MA0104.2	MA0104.2	0.0998
MA0105.1	MA0105.1	8.95629e-13
MA0106.1	MA0106.1	0.0924
MA0107.1	MA0107.1	8.96653e-17
MA0108.2	MA0108.2	8.24339e-4
MA0111.1	MA0111.1	0.552
MA0112.2	MA0112.2	0.552
MA0113.1	MA0113.1	0.171
MA0114.1	MA0114.1	0.4
MA0115.1	MA0115.1	0.543
MA0116.1	MA0116.1	0.0126
MA0117.1	MA0117.1	0.0543
MA0119.1	MA0119.1	0.17
MA0122.1	MA0122.1	0.955
MA0124.1	MA0124.1	0.986
MA0125.1	MA0125.1	0.225
MA0131.1	MA0131.1	0.0477
MA0135.1	MA0135.1	0.0511
MA0136.1	MA0136.1	3.58624e-12
MA0137.2	MA0137.2	0.00657
MA0138.2	MA0138.2	0.112
MA0139.1	MA0139.1	0.522
MA0140.1	MA0140.1	0.895
MA0141.1	MA0141.1	0.153
MA0142.1	MA0142.1	0.53
MA0143.1	MA0143.1	0.567
MA0144.1	MA0144.1	0.0169
MA0145.1	MA0145.1	0.0157
MA0146.1	MA0146.1	0.598
MA0147.1	MA0147.1	0.118
MA0148.1	MA0148.1	0.705
MA0149.1	MA0149.1	0.436
MA0150.1	MA0150.1	0.669
MA0152.1	MA0152.1	0.0662
MA0153.1	MA0153.1	0.00548
MA0154.1	MA0154.1	0.0329
MA0155.1	MA0155.1	0.249
MA0156.1	MA0156.1	2.12243e-5
MA0157.1	MA0157.1	0.0448
MA0159.1	MA0159.1	0.236
MA0160.1	MA0160.1	0.955
MA0162.1	MA0162.1	0.253
MA0163.1	MA0163.1	0.00375
MA0164.1	MA0164.1	0.372
MA0258.1	MA0258.1	0.786
MA0259.1	MA0259.1	0.421

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12354

Novel motif	Logo	P-value
1	1	0.647
10	10	0.00683
100	100	0.73
101	101	0.451
102	102	0.891
103	103	0.549
104	104	0.741
105	105	0.819
106	106	0.0721
107	107	0.189
108	108	0.384
109	109	0.982
11	11	0.517
110	110	0.99
111	111	0.163
112	112	0.854
113	113	0.0348
114	114	0.673
115	115	0.967
116	116	0.14
117	117	8.98836e-4
118	118	0.291
119	119	0.561
12	12	0.565
120	120	0.364
121	121	0.243
122	122	0.752
123	123	2.71168e-4
124	124	0.819
125	125	0.376
126	126	0.335
127	127	0.724
128	128	0.783
129	129	0.216
13	13	0.459
130	130	0.074
131	131	0.249
132	132	0.106
133	133	0.0698
134	134	0.679
135	135	0.0495
136	136	0.372
137	137	0.00729
138	138	0.604
139	139	0.371
14	14	0.523
140	140	0.117
141	141	0.256
142	142	0.62
143	143	0.612
144	144	0.749
145	145	0.927
146	146	0.502
147	147	0.153
148	148	0.204
149	149	0.875
15	15	0.496
150	150	0.804
151	151	0.85
152	152	0.993
153	153	0.358
154	154	0.245
155	155	0.0161
156	156	0.69
157	157	0.517
158	158	0.0035
159	159	0.566
16	16	0.202
160	160	0.34
161	161	0.978
162	162	0.302
163	163	0.37
164	164	0.0374
165	165	0.759
166	166	0.318
167	167	0.13
168	168	0.778
169	169	0.33
17	17	0.786
18	18	0.92
19	19	0.0731
2	2	0.205
20	20	0.112
21	21	0.784
22	22	0.31
23	23	0.869
24	24	0.349
25	25	0.114
26	26	0.552
27	27	0.494
28	28	0.481
29	29	0.0515
3	3	0.499
30	30	0.0758
31	31	0.695
32	32	0.0141
33	33	0.527
34	34	0.401
35	35	0.202
36	36	0.0771
37	37	0.255
38	38	0.968
39	39	0.4
4	4	0.868
40	40	0.585
41	41	0.089
42	42	0.501
43	43	0.393
44	44	0.846
45	45	0.2
46	46	0.745
47	47	0.613
48	48	0.838
49	49	0.125
5	5	0.875
50	50	0.76
51	51	0.868
52	52	0.909
53	53	0.422
54	54	0.884
55	55	0.639
56	56	0.753
57	57	0.795
58	58	0.104
59	59	0.569
6	6	0.807
60	60	0.461
61	61	0.139
62	62	0.183
63	63	0.887
64	64	0.987
65	65	0.671
66	66	0.289
67	67	0.635
68	68	0.827
69	69	0.413
7	7	0.532
70	70	0.275
71	71	0.123
72	72	0.417
73	73	0.557
74	74	0.596
75	75	0.00952
76	76	0.0149
77	77	0.0101
78	78	0.71
79	79	0.534
8	8	0.527
80	80	0.279
81	81	0.41
82	82	0.295
83	83	0.535
84	84	0.0812
85	85	0.471
86	86	0.033
87	87	0.57
88	88	0.71
89	89	0.00188
9	9	0.703
90	90	0.308
91	91	0.17
92	92	0.971
93	93	0.555
94	94	0.251
95	95	0.103
96	96	0.549
97	97	0.523
98	98	0.262
99	99	1.25909e-5

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12354

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=sRNA-Seq@SAMD00013695!CAGE@SAMD00004926
+|DRA_sample_Accession=CAGE@SAMD00004926
-|accession_numbers=CAGE;DRX008172;DRR009044;DRZ000469;DRZ001854!sRNA-Seq;DRX012362;DRR013810;DRZ003011;NA
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013695
+|accession_numbers=CAGE;DRX008172;DRR009044;DRZ000469;DRZ001854;DRZ011819;DRZ013204
+|accession_numbers_RNASeq=sRNA-Seq;DRX012362;DRR013810;DRZ003011
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.70!501.54!IRF8;;chr11:111249993..111250006,-!p1@POU2AF1!2.41!254.59!POU2AF1;;chr2:100759010..100759035,-!p1@AFF3!2.35!220.57!AFF3;;chrX:106960221..106960236,-!p3@TSC22D3!2.30!524.10!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!2.30!199.93!SPIB;;chr6:91006518..91006570,-!p1@BACH2!2.29!425.09!BACH2;;chrX:106960180..106960197,-!p2@TSC22D3!2.28!678.92!TSC22D3;;chr6:391743..391759,+!p1@IRF4!2.26!181.58!IRF4;;chrX:106960249..106960260,-!p5@TSC22D3!2.21!248.10!TSC22D3;;chr2:157189180..157189290,-!p1@NR4A2!2.20!783.28!NR4A2;;chr2:100759037..100759058,-!p2@AFF3!2.10!125.39!AFF3;;chr19:54041669..54041697,+!p2@ZNF331!2.08!119.65!ZNF331;;chr6:91006575..91006602,-!p2@BACH2!2.05!163.23!BACH2;;chr17:38020392..38020477,-!p1@IKZF3!2.03!106.27!IKZF3;;chr19:54058073..54058088,+!p1@ZNF331!2.02!103.21!ZNF331;;chr3:71355163..71355209,-!p5@FOXP1!1.97!125.39!FOXP1;;chr9:37034186..37034216,-!p2@PAX5!1.97!91.36!PAX5;;chr2:231090433..231090469,+!p1@SP140!1.95!89.07!SP140;;chr2:231090471..231090504,+!p2@SP140!1.88!74.54!SP140;;chr19:45971246..45971265,+!p1@FOSB!1.86!1250.80!FOSB;;chr19:36391434..36391450,-!p1@NFKBID!1.85!134.56!NFKBID;;chr11:47400078..47400106,-!p1@SPI1!1.85!69.19!SPI1;;chr2:60780607..60780624,-!p2@BCL11A!1.81!186.55!BCL11A;;chr1:25256756..25256774,-!p1@RUNX3!1.79!111.62!RUNX3;;chr2:100758991..100759009,-!p3@AFF3!1.72!51.22!AFF3;;chrY:21906594..21906622,-!p1@KDM5D!1.72!51.22!KDM5D;;chr14:75745523..75745537,+!p1@FOS!1.71!5689.75!FOS;;chr7:50343634..50343717,+!p2@IKZF1!1.71!50.46!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.70!49.31!ZBP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.69!1218.69!TSC22D3;;chr9:102584262..102584276,+!p1@NR4A3!1.67!100.16!NR4A3;;chr2:157189617..157189667,-!p4@NR4A2!1.67!45.49!NR4A2;;chr19:54041645..54041661,+!p5@ZNF331!1.66!45.11!ZNF331;;chr5:158526756..158526797,-!p3@EBF1!1.66!44.73!EBF1;;chr7:50344289..50344323,+!p1@IKZF1!1.65!43.20!IKZF1;;chr20:50159198..50159299,-!p1@NFATC2!1.63!60.40!NFATC2;;chr2:60781201..60781258,-!p3@BCL11A!1.63!42.05!BCL11A;;chr2:61108695..61108753,+!p1@REL!1.62!267.21!REL;;chr5:88178983..88179012,-!p1@MEF2C!1.60!285.18!MEF2C;;chr5:88120151..88120177,-!p6@MEF2C!1.59!37.85!MEF2C;;chr19:16435625..16435682,+!p1@KLF2!1.58!1119.68!KLF2;;chr5:142782823..142782854,-!p3@NR3C1!1.58!52.75!NR3C1;;chr14:64971288..64971316,-!p2@ZBTB25!1.56!106.65!ZBTB25;;chr9:37034258..37034270,-!p3@PAX5!1.55!34.40!PAX5;;chr18:77155922..77155939,+!p1@NFATC1!1.52!84.86!NFATC1;;chr8:123793988..123794016,+!p1@ZHX2!1.52!55.43!ZHX2;;chr5:131826457..131826514,-!p1@IRF1!1.51!1155.99!IRF1;;chr8:81397846..81397860,+!p3@ZBTB10!1.51!39.37!ZBTB10;;chr17:38020557..38020572,-!p4@IKZF3!1.51!31.73!IKZF3;;chr3:32023232..32023273,+!p1@ZNF860!1.50!43.58!ZNF860;;chr9:102584128..102584144,+!p3@NR4A3!1.49!56.19!NR4A3;;chr8:81397820..81397836,+!p2@ZBTB10!1.48!35.93!ZBTB10;;chr10:3827371..3827386,-!p2@KLF6!1.45!217.90!KLF6;;chr19:42636586..42636607,-!p1@POU2F2!1.45!74.16!POU2F2;;chr4:103422499..103422632,+!p1@NFKB1!1.44!526.01!NFKB1;;chr9:3525727..3525828,-!p2@RFX3!1.44!65.75!RFX3;;chr3:71631151..71631194,-!p15@FOXP1!1.42!28.67!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.41!24.85!IKZF1;;chr14:35873947..35873965,-!p1@NFKBIA!1.40!1475.19!NFKBIA;;chr1:10754477..10754517,-!p1@CASZ1!1.40!39.37!CASZ1;;chr6:91006503..91006517,-!p3@BACH2!1.40!24.08!BACH2;;chr17:38497662..38497713,+!p4@RARA!1.39!27.14!RARA;;chr10:35484053..35484076,+!p1@CREM!1.38!56.58!CREM;;chr10:104155480..104155534,+!p2@NFKB2!1.37!141.82!NFKB2;;chr8:81397876..81397898,+!p5@ZBTB10!1.37!26.38!ZBTB10;;chr9:37034469..37034474,-!p1@PAX5!1.36!22.17!PAX5;;chr2:68592406..68592424,+!p1@PLEK!1.36!22.17!PLEK;;chr13:41593425..41593480,-!p1@ELF1!1.35!132.27!ELF1;;chr9:102584159..102584174,+!p2@NR4A3!1.35!37.85!NR4A3;;chr2:60780753..60780800,-!p1@BCL11A!1.33!97.10!BCL11A;;chr14:69262947..69262986,-!p3@ZFP36L1!1.32!24.08!ZFP36L1;;chr3:71409904..71409927,-!p46@FOXP1!1.32!19.88!FOXP1;;chr17:38020516..38020544,-!p5@IKZF3!1.32!19.88!IKZF3;;chr3:39195075..39195088,-!p1@CSRNP1!1.31!117.74!CSRNP1;;chr7:64126535..64126559,+!p2@ZNF107!1.31!41.29!ZNF107;;chr1:14075903..14075940,+!p1@PRDM2!1.30!390.30!PRDM2;;chr17:56565257..56565283,-!p2@HSF5!1.30!19.11!HSF5;;chr6:157098579..157098634,+!p4@ARID1B!1.29!40.90!ARID1B;;chr19:12902289..12902307,+!p1@JUNB!1.28!3958.06!JUNB;;chr6:44233252..44233296,-!p1@NFKBIE!1.27!171.26!NFKBIE;;chr9:102584241..102584261,+!p4@NR4A3!1.27!27.14!NR4A3;;chr19:58220517..58220583,-!p1@ZNF154!1.26!53.90!ZNF154;;chr2:61108808..61108821,+!p3@REL!1.26!21.41!REL;;chr14:75746722..75746777,+!p2@FOS!1.25!21.41!FOS;;chr3:18487057..18487105,-!p4@SATB1!1.25!16.82!SATB1;;chr8:86089531..86089544,+!p7@E2F5!1.25!16.82!E2F5;;chr2:208031542..208031595,-!p2@KLF7!1.24!112.77!KLF7;;chr10:104154246..104154347,+!p3@NFKB2!1.24!99.77!NFKB2;;chr17:38498402..38498445,+!p3@RARA!1.24!58.49!RARA;;chr18:52989031..52989079,-!p2@TCF4!1.24!38.23!TCF4;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.64!SATB1;;chr19:36204309..36204335,+!p1@ZBTB32!1.24!16.44!ZBTB32;;chr5:158526693..158526706,-!p8@EBF1!1.24!16.44!EBF1;;chr2:97202480..97202499,+!p1@ARID5A!1.23!158.64!ARID5A;;chr10:94449703..94449718,+!p1@HHEX!1.23!60.78!HHEX;;chr5:158526709..158526741,-!p7@EBF1!1.23!16.06!EBF1;;chr7:50348268..50348366,+!p4@IKZF1!1.23!16.06!IKZF1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.22!1628.10!ZFP36L2;;chr3:71114066..71114114,-!p1@FOXP1!1.22!308.88!FOXP1;;chr19:45252008..45252024,+!p2@BCL3!1.22!50.84!BCL3;;chrX:101186981..101187030,-!p1@ZMAT1!1.22!50.84!ZMAT1;;chr12:72056800..72056834,+!p1@THAP2!1.22!21.03!THAP2;;chr3:5020939..5020952,+!p2@BHLHE40!1.21!47.78!BHLHE40;;chr19:12721790..12721810,+!p2@ZNF791!1.21!41.29!ZNF791;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!21.79!ZBTB16;;chr1:59249707..59249727,-!p1@JUN!1.20!610.87!JUN;;chr6:144385698..144385742,-!p2@PLAGL1!1.20!17.97!PLAGL1;;chr2:60778035..60778060,-!p4@BCL11A!1.20!17.58!BCL11A;;chr19:18392422..18392440,-!p1@JUND!1.19!1978.65!JUND;;chr5:133450365..133450444,+!p1@TCF7!1.19!64.99!TCF7;;chr3:71179699..71179744,-!p2@FOXP1!1.18!105.13!FOXP1;;chr15:50647274..50647336,-!p1@GABPB1!1.18!97.86!GABPB1;;chr19:13213662..13213686,-!p1@LYL1!1.18!20.64!LYL1;;chr19:45972701..45972774,+!p2@FOSB!1.18!19.11!FOSB;;chr9:102584278..102584285,+!p5@NR4A3!1.18!14.14!NR4A3;;chr9:117160738..117160782,-!p2@AKNA!1.17!56.19!AKNA;;chr2:192015701..192015743,-!p1@STAT4!1.17!18.73!STAT4;;chr2:100759060..100759073,-!p8@AFF3!1.17!13.76!AFF3;;chr2:100759076..100759088,-!p10@AFF3!1.17!13.76!AFF3;;chr8:123794038..123794056,+!p5@ZHX2!1.17!13.76!ZHX2;;chr21:36421535..36421610,-!p2@RUNX1!1.16!47.78!RUNX1;;chr9:37034147..37034157,-!p7@PAX5!1.16!13.38!PAX5;;chr12:52445218..52445237,+!p1@NR4A1!1.15!164.00!NR4A1;;chr11:67007548..67007610,+!p3@KDM2A!1.15!97.86!KDM2A;;chr13:41240717..41240735,-!p2@FOXO1!1.15!87.92!FOXO1;;chr7:21467674..21467727,+!p1@SP4!1.15!51.61!SP4;;chr7:104654690..104654704,+!p2@MLL5!1.15!25.99!MLL5;;chr7:64126503..64126528,+!p1@ZNF107!1.14!90.98!ZNF107;;chr8:81398444..81398472,+!p1@ZBTB10!1.14!51.22!ZBTB10;;chr14:35872453..35872485,-!p2@NFKBIA!1.14!31.73!NFKBIA;;chr9:117150254..117150271,-!p1@AKNA!1.13!34.40!AKNA;;chr19:12075844..12075880,+!p3@ZNF763!1.13!21.41!ZNF763;;chr7:104654718..104654741,+!p3@MLL5!1.13!18.35!MLL5;;chr19:54041603..54041615,+!p10@ZNF331!1.13!12.62!ZNF331;;chr10:104154415..104154434,+!p5@NFKB2!1.13!12.62!NFKB2;;chr1:45805693..45805718,+!p3@TOE1!1.12!26.38!TOE1;;chr8:102218439..102218455,-!p3@ZNF706!1.12!12.23!ZNF706;;chrY:21906761..21906810,-!p2@KDM5D!1.12!12.23!KDM5D;;chr2:145277640..145277771,-!p1@ZEB2!1.11!159.41!ZEB2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.11!66.52!ZNF10;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.70!MBNL3;;chr21:30671189..30671207,+!p4@BACH1!1.11!41.67!BACH1;;chr1:27023752..27023799,+!p4@ARID1A!1.11!15.67!ARID1A;;chr19:54041574..54041589,+!p6@ZNF331!1.11!11.85!ZNF331;;chr2:61108650..61108687,+!p2@REL!1.10!57.34!REL;;chr6:43337124..43337144,-!p4@ZNF318!1.10!16.44!ZNF318;;chr9:37027156..37027193,-!p4@PAX5!1.10!11.47!PAX5;;chr13:41593392..41593403,-!p7@ELF1!1.10!11.47!ELF1;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.29!EBF1;;chr19:47616992..47617011,-!p4@ZC3H4!1.09!24.08!ZC3H4;;chr8:123793959..123793977,+!p4@ZHX2!1.09!22.17!ZHX2;;chr10:3827389..3827408,-!p1@KLF6!1.08!844.44!KLF6;;chr7:64838786..64838809,+!p2@ZNF92!1.08!63.46!ZNF92;;chr17:37934204..37934241,-!p3@IKZF3!1.08!11.09!IKZF3;;chr11:128563948..128564003,+!p1@FLI1!1.07!129.97!FLI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.07!66.52!CSRNP1;;chr1:91487836..91487854,-!p3@ZNF644!1.07!24.85!ZNF644;;chr18:53254566..53254567,-!p8@TCF4!1.07!17.97!TCF4;;chr17:38020607..38020621,-!p9@IKZF3!1.07!10.70!IKZF3;;chr1:14057463..14057496,+!p4@PRDM2!1.07!10.70!PRDM2;;chr1:167298300..167298319,+!p2@POU2F1!1.07!10.70!POU2F1;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.70!IKZF1;;chr2:157186630..157186686,-!p6@NR4A2!1.07!10.70!NR4A2;;chr2:60780730..60780742,-!p5@BCL11A!1.07!10.70!BCL11A;;chr3:71631217..71631234,-!p33@FOXP1!1.07!10.70!FOXP1;;chr7:77428066..77428132,+!p2@PHTF2!1.06!68.43!PHTF2;;chr19:45504688..45504782,+!p1@RELB!1.06!64.22!RELB;;chr1:59249688..59249703,-!p3@JUN!1.06!63.46!JUN;;chr3:101546827..101546847,+!p2@NFKBIZ!1.06!14.91!NFKBIZ;;chr19:45579725..45579743,-!p1@ZNF296!1.05!46.64!ZNF296;;chr6:12008986..12009016,+!p3@HIVEP1!1.05!32.49!HIVEP1;;chr9:110252074..110252079,-!p3@KLF4!1.05!17.20!KLF4;;chr7:128577972..128578047,+!p1@IRF5!1.05!16.44!IRF5;;chr10:3819310..3819325,-!p5@KLF6!1.05!13.76!KLF6;;chr6:12009042..12009092,+!p6@HIVEP1!1.05!13.38!HIVEP1;;chr17:38020481..38020506,-!p7@IKZF3!1.05!10.32!IKZF3;;chr12:108154762..108154776,-!p4@PRDM4!1.05!10.32!PRDM4;;chr2:157189567..157189580,-!p19@NR4A2!1.05!10.32!NR4A2;;chr10:3827417..3827428,-!p3@KLF6!1.04!87.16!KLF6;;chr1:14026671..14026705,+!p2@PRDM2!1.04!61.93!PRDM2;;chr3:23986824..23986848,+!p2@NR1D2!1.04!56.19!NR1D2;;chr7:21467642..21467671,+!p2@SP4!1.04!22.94!SP4;;chr1:156470515..156470542,-!p2@MEF2D!1.03!51.61!MEF2D;;chr2:208394817..208394834,+!p3@CREB1!1.03!39.76!CREB1;;chr3:71007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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11705-123B4
 |is_a=EFO:0002091;;FF:0000025;;FF:0000210
 |is_obsolete=
 |library_id=CNhs12354!SRhi10066.CTTGTA
-|library_id_phase_based=1:CNhs12354
+|library_id_phase_based=2:CNhs12354
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11705
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.CTTGTA.11705
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11705
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.CTTGTA.11705
 |name=CD19+ B Cells, donor3
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12354,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 67: / Line 82: @@
 |rna_tube_id=123B4
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10066.CTTGTA
 |sample_age=
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11705-123B4;search_select_hide=table117:FF:11705-123B4
 }}

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FF:11705-123B4: Difference between revisions

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Latest revision as of 18:15, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0