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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005738
|accession_numbers=CAGE;DRX008506;DRR009378;DRZ000803;DRZ002188;DRZ012153;DRZ013538
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002600
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002600
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.33!212.51!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.79!61.00!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.63!68.21!TCF12;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.59!ZFP106;;chr6:1389789..1389821,+!p1@FOXF2!1.57!49.19!FOXF2;;chr14:61116183..61116208,-!p1@SIX1!1.51!114.78!SIX1;;chr16:86544113..86544145,+!p1@FOXF1!1.50!37.39!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!1.49!93.79!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!1.47!41.32!NFIX;;chr17:59477233..59477263,+!p1@TBX2!1.44!80.02!TBX2;;chr17:1959369..1959388,+!p2@HIC1!1.36!56.41!HIC1;;chr17:46671108..46671147,-!p1@HOXB5!1.33!20.33!HOXB5;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.89!PRRX1;;chr17:46655704..46655718,-!p2@HOXB4!1.30!28.20!HOXB4;;chr1:170632285..170632309,+!p1@PRRX1!1.30!21.64!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.27!89.20!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.27!47.88!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.20!TWIST2;;chr15:96876966..96877017,+!p12@NR2F2!1.24!23.61!NR2F2;;chr7:27183291..27183324,-!p1@HOXA5!1.22!15.74!HOXA5;;chr3:25470156..25470227,+!p2@RARB!1.22!15.74!RARB;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.67!HMGA2;;chr7:27183263..27183284,-!p2@HOXA5!1.21!15.09!HOXA5;;chr17:59477275..59477286,+!p3@TBX2!1.20!19.68!TBX2;;chr5:92918956..92918969,+!p4@NR2F1!1.20!16.40!NR2F1;;chr12:66218598..66218645,+!p2@HMGA2!1.19!66.25!HMGA2;;chr11:47279504..47279563,+!p1@NR1H3!1.18!32.14!NR1H3;;chr11:46299539..46299620,+!p2@CREB3L1!1.18!23.61!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.65!NR2F1;;chr14:75745523..75745537,+!p1@FOS!1.15!1547.91!FOS;;chr15:57511589..57511608,+!p4@TCF12!1.15!13.12!TCF12;;chr15:96873984..96873999,+!p3@NR2F2!1.13!90.51!NR2F2;;chr3:12329358..12329393,+!p3@PPARG!1.13!30.83!PPARG;;chr20:50179368..50179392,-!p2@NFATC2!1.12!15.74!NFATC2;;chr1:170633262..170633285,+!p3@PRRX1!1.11!13.77!PRRX1;;chr17:59477197..59477212,+!p2@TBX2!1.09!19.68!TBX2;;chr9:132427972..132428056,+!p1@PRRX2!1.08!14.43!PRRX2;;chr7:27183114..27183138,-!p3@HOXA5!1.08!11.15!HOXA5;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.09!ZBTB16;;chr3:12329397..12329433,+!p2@PPARG!1.03!22.30!PPARG;;chr3:141105705..141105770,+!p4@ZBTB38!1.03!11.81!ZBTB38;;chr5:2751762..2751784,-!p1@IRX2!1.03!9.84!IRX2;;chr7:27183191..27183214,-!p4@HOXA5!1.03!9.84!HOXA5;;chr17:46675558..46675577,-!p2@HOXB6!1.03!9.84!HOXB6;;chr9:102584262..102584276,+!p1@NR4A3!1.02!21.64!NR4A3;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.49!PRRX1;;chr5:137801160..137801176,+!p1@EGR1!1.01!927.44!EGR1;;chr8:49833948..49833973,-!p2@SNAI2!1.01!59.69!SNAI2;;chr6:1389989..1390019,+!p2@FOXF2!1.01!9.18!FOXF2;;chr6:1610293..1610310,+!p1@FOXC1!1.00!15.09!FOXC1;;chr8:48650715..48650735,-!p1@CEBPD!0.99!1147.82!CEBPD;;chr19:45971246..45971265,+!p1@FOSB!0.99!165.94!FOSB;;chr7:19157043..19157088,-!p2@TWIST1!0.99!22.30!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.99!17.05!NR2F2;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.99!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.98!9.84!NR1H3;;chr14:61116168..61116180,-!p2@SIX1!0.98!9.84!SIX1;;chr3:12330560..12330579,+!p1@PPARG!0.98!9.84!PPARG;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.53!KDM5D;;chr12:52445218..52445237,+!p1@NR4A1!0.95!102.98!NR4A1;;chr15:96874012..96874042,+!p2@NR2F2!0.94!71.49!NR2F2;;chr17:17726907..17726958,-!p2@SREBF1!0.94!49.19!SREBF1;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.64!OSR1;;chr19:3574330..3574393,+!p2@HMG20B!0.91!7.21!HMG20B;;chr1:170632250..170632277,+!p7@PRRX1!0.91!7.21!PRRX1;;chr14:29235961..29236008,+!p1@FOXG1!0.91!7.21!FOXG1;;chr9:132427883..132427951,+!p2@PRRX2!0.91!7.21!PRRX2;;chr8:25902876..25902936,-!p1@EBF2!0.91!7.21!EBF2;;chr8:49833978..49833996,-!p1@SNAI2!0.90!148.23!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.90!31.48!PCBP3;;chr5:92919100..92919135,+!p3@NR2F1!0.90!8.53!NR2F1;;chr6:85473156..85473210,-!p2@TBX18!0.90!8.53!TBX18;;chr12:66218183..66218209,+!p4@HMGA2!0.88!13.12!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.88!6.56!HMGA2;;chr15:80843484..80843499,+!p5@ARNT2!0.88!6.56!ARNT2;;chr7:14028488..14028516,-!p2@ETV1!0.87!7.21!ETV1;;chr20:42543441..42543497,+!p1@TOX2!0.85!28.86!TOX2;;chr5:137804484..137804498,+!p2@EGR1!0.85!25.58!EGR1;;chr9:128509663..128509715,+!p1@PBX3!0.85!21.64!PBX3;;chr14:73360799..73360817,-!p1@DPF3!0.84!21.64!DPF3;;chr20:42543506..42543549,+!p2@TOX2!0.84!15.09!TOX2;;chr12:115122318..115122331,-!p2@TBX3!0.84!5.90!TBX3;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.90!ZFY;;chr7:27142290..27142310,-!p1@HOXA2!0.84!5.90!HOXA2;;chr1:164528410..164528428,+!p1@PBX1!0.83!45.91!PBX1;;chr1:164528445..164528459,+!p2@PBX1!0.83!19.02!PBX1;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.04!HIC1;;chr17:7492684..7492778,-!p2@SOX15!0.82!12.46!SOX15;;chr9:73029219..73029289,-!p2@KLF9!0.81!17.71!KLF9;;chr14:75746722..75746777,+!p2@FOS!0.81!7.21!FOS;;chr5:137804357..137804390,+!p4@EGR1!0.81!6.56!EGR1;;chr2:66662281..66662308,+!p1@MEIS1!0.80!19.68!MEIS1;;chr2:223163706..223163730,-!p1@PAX3!0.80!5.25!PAX3;;chr6:1389824..1389840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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002600;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg38.nobarcode.ctss.bed.gz
|id=FF:11674-122G9
|id=FF:11674-122G9
|is_a=EFO:0002091;;FF:0000184
|is_a=EFO:0002091;;FF:0000184
|is_obsolete=
|is_obsolete=
|library_id=CNhs12894
|library_id_phase_based=2:CNhs12894
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11674
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11674
|name=Smooth Muscle Cells - Tracheal, donor3
|name=Smooth Muscle Cells - Tracheal, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12894,LSID974,release012,COMPLETED
|profile_hcage=CNhs12894,LSID974,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_cell_line=
Line 84: Line 101:
|top_motifs=GZF1:2.73743043739;TAL1_TCF{3,4,12}:2.21762170901;ZNF238:1.8203101393;DBP:1.67405660998;TFAP4:1.64327212105;HOX{A6,A7,B6,B7}:1.30631233673;ZNF423:1.30518266886;POU3F1..4:1.19267100276;SRF:1.14580831936;GLI1..3:1.14167702342;GFI1B:1.07027113452;NKX2-1,4:1.06881051703;ALX4:1.06199147842;FOXD3:1.04557621621;HOX{A5,B5}:0.993374314446;EN1,2:0.929623269983;TLX1..3_NFIC{dimer}:0.924980655989;LHX3,4:0.897569307488;MYBL2:0.879446528262;EBF1:0.868564768381;AR:0.823903061634;ZIC1..3:0.792661137753;TFCP2:0.78558341535;NKX3-1:0.783965161425;PATZ1:0.783412424399;GTF2I:0.773815785573;UFEwm:0.769932574683;PAX1,9:0.767534109343;NR6A1:0.765584754706;NKX6-1,2:0.741804219819;NANOG{mouse}:0.736742854089;ATF6:0.729913058399;NFIX:0.725376040092;NKX2-2,8:0.678791729121;HES1:0.646654656157;NHLH1,2:0.638759305381;RXRA_VDR{dimer}:0.623206590837;TBX4,5:0.618989118706;TEAD1:0.590400588342;MZF1:0.589389701181;RXR{A,B,G}:0.580944759498;SOX17:0.570931754737;HAND1,2:0.570601305826;PAX4:0.564641026235;PAX6:0.562640203325;PAX5:0.559254480641;HOX{A4,D4}:0.533112566124;HIC1:0.523247275252;MYFfamily:0.508851697249;STAT5{A,B}:0.50213433911;bHLH_family:0.496761669479;ZNF384:0.48313423091;GTF2A1,2:0.465496145425;TBP:0.458559950781;NFATC1..3:0.453655708196;NR3C1:0.45275334973;ONECUT1,2:0.393509746679;AHR_ARNT_ARNT2:0.374253866264;ESR1:0.3741641878;KLF4:0.372050256815;NR5A1,2:0.366707513375;SPZ1:0.359808533672;AIRE:0.354032204954;MAZ:0.351371312328;TOPORS:0.335611603458;SREBF1,2:0.319791396024;HNF4A_NR2F1,2:0.318575713902;NR1H4:0.300323088543;MTF1:0.292993259849;RREB1:0.247620926639;NKX2-3_NKX2-5:0.21072704809;HMGA1,2:0.2093011797;EVI1:0.19484086647;HNF1A:0.174957154893;TP53:0.1728424281;GCM1,2:0.172709418404;LEF1_TCF7_TCF7L1,2:0.171491479556;ESRRA:0.1658289536;IKZF1:0.144419364924;ZBTB6:0.139946077955;PAX3,7:0.120095694589;EGR1..3:0.112367084073;ZNF148:0.10823809283;REST:0.104581630784;TFAP2{A,C}:0.103507826433;SOX5:0.100766300476;MEF2{A,B,C,D}:0.095023960221;POU5F1:0.0877269332329;FOX{D1,D2}:0.0842113984491;PRDM1:0.0651719059502;PAX8:0.0469371185113;HLF:0.0451042457794;HMX1:0.0349879878134;MED-1{core}:0.0309903772612;PDX1:0.0238238883437;SP1:0.0186505357945;TEF:0.014959626944;JUN:-0.00578299252345;POU6F1:-0.0170176013476;FOXO1,3,4:-0.0205045313294;ALX1:-0.0225846141589;HIF1A:-0.0230183825468;XBP1:-0.0234344386619;POU2F1..3:-0.023803765753;BACH2:-0.0369756909947;NFE2L2:-0.037140245067;GATA4:-0.0398321141486;STAT2,4,6:-0.0456848498627;STAT1,3:-0.0681392026576;RUNX1..3:-0.07027074212;PRRX1,2:-0.0866256302783;ZFP161:-0.0958644952852;NANOG:-0.112878823511;ARID5B:-0.117965114269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.12262056165;CEBPA,B_DDIT3:-0.128364520842;MTE{core}:-0.129300175983;XCPE1{core}:-0.133282472791;FOXP3:-0.1445145801;FOSL2:-0.148513896569;RFX1:-0.169419646065;FOS_FOS{B,L1}_JUN{B,D}:-0.172078263057;DMAP1_NCOR{1,2}_SMARC:-0.176972544276;TGIF1:-0.194097523227;VSX1,2:-0.194840051345;NFE2:-0.197497904657;CDX1,2,4:-0.199209356721;TFAP2B:-0.203356526801;PBX1:-0.20378419581;MAFB:-0.210238230398;TFDP1:-0.219054087846;HSF1,2:-0.241120483358;SMAD1..7,9:-0.247861301366;TLX2:-0.275491894253;GFI1:-0.276369779447;IRF1,2:-0.287150499489;FOXM1:-0.304871214972;YY1:-0.312470801127;HOXA9_MEIS1:-0.315654976068;RBPJ:-0.329969944231;CDC5L:-0.33666014973;EP300:-0.340010802121;RFX2..5_RFXANK_RFXAP:-0.351060190708;FOXQ1:-0.357934051655;BPTF:-0.363211122455;FOXL1:-0.411437729588;ATF4:-0.412381094435;LMO2:-0.427966223933;ADNP_IRX_SIX_ZHX:-0.43262471149;SOX2:-0.449515927975;CUX2:-0.492767371768;ZNF143:-0.494610642305;ATF5_CREB3:-0.499856457813;NFKB1_REL_RELA:-0.504702348379;RORA:-0.533643518237;ZBTB16:-0.543463959403;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.579569565333;ETS1,2:-0.581536411476;GATA6:-0.606553677342;MYB:-0.614040209285;FOX{F1,F2,J1}:-0.614349619139;SPI1:-0.668222079563;IRF7:-0.674223832064;E2F1..5:-0.681417425906;NFIL3:-0.687963343806;BREu{core}:-0.69877942745;FOX{I1,J2}:-0.715354121589;NRF1:-0.716367468053;FOXP1:-0.716622886232;CREB1:-0.741212887005;SNAI1..3:-0.743760021817;ATF2:-0.744282784157;SPIB:-0.750016730516;IKZF2:-0.759643002366;OCT4_SOX2{dimer}:-0.799379728372;FOXA2:-0.830877676402;PPARG:-0.833515079651;PAX2:-0.83676395264;PITX1..3:-0.846580391357;NKX3-2:-0.847062710267;NFY{A,B,C}:-0.858492773607;CRX:-0.884010343965;SOX{8,9,10}:-0.944252986772;ELF1,2,4:-0.951883012236;FOXN1:-0.992555694249;POU1F1:-1.01225961074;NFE2L1:-1.02644609782;ZEB1:-1.04455762318;ELK1,4_GABP{A,B1}:-1.15608838789;T:-1.20438877678;MYOD1:-1.36315646148;HBP1_HMGB_SSRP1_UBTF:-1.36457072512
|top_motifs=GZF1:2.73743043739;TAL1_TCF{3,4,12}:2.21762170901;ZNF238:1.8203101393;DBP:1.67405660998;TFAP4:1.64327212105;HOX{A6,A7,B6,B7}:1.30631233673;ZNF423:1.30518266886;POU3F1..4:1.19267100276;SRF:1.14580831936;GLI1..3:1.14167702342;GFI1B:1.07027113452;NKX2-1,4:1.06881051703;ALX4:1.06199147842;FOXD3:1.04557621621;HOX{A5,B5}:0.993374314446;EN1,2:0.929623269983;TLX1..3_NFIC{dimer}:0.924980655989;LHX3,4:0.897569307488;MYBL2:0.879446528262;EBF1:0.868564768381;AR:0.823903061634;ZIC1..3:0.792661137753;TFCP2:0.78558341535;NKX3-1:0.783965161425;PATZ1:0.783412424399;GTF2I:0.773815785573;UFEwm:0.769932574683;PAX1,9:0.767534109343;NR6A1:0.765584754706;NKX6-1,2:0.741804219819;NANOG{mouse}:0.736742854089;ATF6:0.729913058399;NFIX:0.725376040092;NKX2-2,8:0.678791729121;HES1:0.646654656157;NHLH1,2:0.638759305381;RXRA_VDR{dimer}:0.623206590837;TBX4,5:0.618989118706;TEAD1:0.590400588342;MZF1:0.589389701181;RXR{A,B,G}:0.580944759498;SOX17:0.570931754737;HAND1,2:0.570601305826;PAX4:0.564641026235;PAX6:0.562640203325;PAX5:0.559254480641;HOX{A4,D4}:0.533112566124;HIC1:0.523247275252;MYFfamily:0.508851697249;STAT5{A,B}:0.50213433911;bHLH_family:0.496761669479;ZNF384:0.48313423091;GTF2A1,2:0.465496145425;TBP:0.458559950781;NFATC1..3:0.453655708196;NR3C1:0.45275334973;ONECUT1,2:0.393509746679;AHR_ARNT_ARNT2:0.374253866264;ESR1:0.3741641878;KLF4:0.372050256815;NR5A1,2:0.366707513375;SPZ1:0.359808533672;AIRE:0.354032204954;MAZ:0.351371312328;TOPORS:0.335611603458;SREBF1,2:0.319791396024;HNF4A_NR2F1,2:0.318575713902;NR1H4:0.300323088543;MTF1:0.292993259849;RREB1:0.247620926639;NKX2-3_NKX2-5:0.21072704809;HMGA1,2:0.2093011797;EVI1:0.19484086647;HNF1A:0.174957154893;TP53:0.1728424281;GCM1,2:0.172709418404;LEF1_TCF7_TCF7L1,2:0.171491479556;ESRRA:0.1658289536;IKZF1:0.144419364924;ZBTB6:0.139946077955;PAX3,7:0.120095694589;EGR1..3:0.112367084073;ZNF148:0.10823809283;REST:0.104581630784;TFAP2{A,C}:0.103507826433;SOX5:0.100766300476;MEF2{A,B,C,D}:0.095023960221;POU5F1:0.0877269332329;FOX{D1,D2}:0.0842113984491;PRDM1:0.0651719059502;PAX8:0.0469371185113;HLF:0.0451042457794;HMX1:0.0349879878134;MED-1{core}:0.0309903772612;PDX1:0.0238238883437;SP1:0.0186505357945;TEF:0.014959626944;JUN:-0.00578299252345;POU6F1:-0.0170176013476;FOXO1,3,4:-0.0205045313294;ALX1:-0.0225846141589;HIF1A:-0.0230183825468;XBP1:-0.0234344386619;POU2F1..3:-0.023803765753;BACH2:-0.0369756909947;NFE2L2:-0.037140245067;GATA4:-0.0398321141486;STAT2,4,6:-0.0456848498627;STAT1,3:-0.0681392026576;RUNX1..3:-0.07027074212;PRRX1,2:-0.0866256302783;ZFP161:-0.0958644952852;NANOG:-0.112878823511;ARID5B:-0.117965114269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.12262056165;CEBPA,B_DDIT3:-0.128364520842;MTE{core}:-0.129300175983;XCPE1{core}:-0.133282472791;FOXP3:-0.1445145801;FOSL2:-0.148513896569;RFX1:-0.169419646065;FOS_FOS{B,L1}_JUN{B,D}:-0.172078263057;DMAP1_NCOR{1,2}_SMARC:-0.176972544276;TGIF1:-0.194097523227;VSX1,2:-0.194840051345;NFE2:-0.197497904657;CDX1,2,4:-0.199209356721;TFAP2B:-0.203356526801;PBX1:-0.20378419581;MAFB:-0.210238230398;TFDP1:-0.219054087846;HSF1,2:-0.241120483358;SMAD1..7,9:-0.247861301366;TLX2:-0.275491894253;GFI1:-0.276369779447;IRF1,2:-0.287150499489;FOXM1:-0.304871214972;YY1:-0.312470801127;HOXA9_MEIS1:-0.315654976068;RBPJ:-0.329969944231;CDC5L:-0.33666014973;EP300:-0.340010802121;RFX2..5_RFXANK_RFXAP:-0.351060190708;FOXQ1:-0.357934051655;BPTF:-0.363211122455;FOXL1:-0.411437729588;ATF4:-0.412381094435;LMO2:-0.427966223933;ADNP_IRX_SIX_ZHX:-0.43262471149;SOX2:-0.449515927975;CUX2:-0.492767371768;ZNF143:-0.494610642305;ATF5_CREB3:-0.499856457813;NFKB1_REL_RELA:-0.504702348379;RORA:-0.533643518237;ZBTB16:-0.543463959403;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.579569565333;ETS1,2:-0.581536411476;GATA6:-0.606553677342;MYB:-0.614040209285;FOX{F1,F2,J1}:-0.614349619139;SPI1:-0.668222079563;IRF7:-0.674223832064;E2F1..5:-0.681417425906;NFIL3:-0.687963343806;BREu{core}:-0.69877942745;FOX{I1,J2}:-0.715354121589;NRF1:-0.716367468053;FOXP1:-0.716622886232;CREB1:-0.741212887005;SNAI1..3:-0.743760021817;ATF2:-0.744282784157;SPIB:-0.750016730516;IKZF2:-0.759643002366;OCT4_SOX2{dimer}:-0.799379728372;FOXA2:-0.830877676402;PPARG:-0.833515079651;PAX2:-0.83676395264;PITX1..3:-0.846580391357;NKX3-2:-0.847062710267;NFY{A,B,C}:-0.858492773607;CRX:-0.884010343965;SOX{8,9,10}:-0.944252986772;ELF1,2,4:-0.951883012236;FOXN1:-0.992555694249;POU1F1:-1.01225961074;NFE2L1:-1.02644609782;ZEB1:-1.04455762318;ELK1,4_GABP{A,B1}:-1.15608838789;T:-1.20438877678;MYOD1:-1.36315646148;HBP1_HMGB_SSRP1_UBTF:-1.36457072512
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11674-122G9;search_select_hide=table117:FF:11674-122G9
}}
}}

Latest revision as of 18:14, 4 June 2020

Name:Smooth Muscle Cells - Tracheal, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12894
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2587
catalog numberSC3415
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005738
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12894 CAGE DRX008506 DRR009378
Accession ID Hg19

Library idBAMCTSS
CNhs12894 DRZ000803 DRZ002188
Accession ID Hg38

Library idBAMCTSS
CNhs12894 DRZ012153 DRZ013538
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.111
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.179
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.219
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00563
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.129
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.213
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.114
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.559
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.788
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.705
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.219
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.215
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.604
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.198
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.556
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.254
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.472
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.219
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.559
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.631
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12894

Jaspar motifP-value
MA0002.20.573
MA0003.10.459
MA0004.10.655
MA0006.10.276
MA0007.10.00801
MA0009.10.341
MA0014.10.797
MA0017.10.678
MA0018.22.78849e-4
MA0019.10.219
MA0024.10.00417
MA0025.10.00102
MA0027.10.675
MA0028.12.61895e-6
MA0029.10.562
MA0030.10.996
MA0031.10.761
MA0035.20.227
MA0038.10.101
MA0039.20.311
MA0040.10.157
MA0041.10.309
MA0042.10.332
MA0043.10.00256
MA0046.10.815
MA0047.20.75
MA0048.10.892
MA0050.12.48873e-4
MA0051.10.103
MA0052.10.109
MA0055.10.142
MA0057.10.966
MA0058.10.739
MA0059.10.639
MA0060.11.65978e-5
MA0061.10.132
MA0062.23.27383e-16
MA0065.20.831
MA0066.10.403
MA0067.10.0161
MA0068.10.71
MA0069.10.187
MA0070.10.788
MA0071.10.957
MA0072.10.546
MA0073.10.582
MA0074.10.0583
MA0076.14.61059e-8
MA0077.10.228
MA0078.10.861
MA0079.20.581
MA0080.22.30672e-8
MA0081.10.00746
MA0083.13.25062e-7
MA0084.10.519
MA0087.10.99
MA0088.10.675
MA0090.10.00258
MA0091.13.80951e-5
MA0092.10.765
MA0093.10.892
MA0099.20.0753
MA0100.10.252
MA0101.10.00666
MA0102.20.934
MA0103.10.029
MA0104.20.295
MA0105.10.237
MA0106.10.791
MA0107.10.0012
MA0108.20.00199
MA0111.10.737
MA0112.20.0134
MA0113.10.0137
MA0114.10.657
MA0115.10.235
MA0116.10.386
MA0117.10.186
MA0119.10.016
MA0122.10.75
MA0124.10.539
MA0125.10.624
MA0131.10.109
MA0135.10.627
MA0136.11.63544e-12
MA0137.20.676
MA0138.20.49
MA0139.10.62
MA0140.10.208
MA0141.10.155
MA0142.10.348
MA0143.10.997
MA0144.10.577
MA0145.10.16
MA0146.10.44
MA0147.10.208
MA0148.10.626
MA0149.10.918
MA0150.10.111
MA0152.10.011
MA0153.10.149
MA0154.10.393
MA0155.10.115
MA0156.12.23974e-15
MA0157.10.686
MA0159.10.618
MA0160.10.838
MA0162.10.073
MA0163.10.0435
MA0164.10.765
MA0258.10.245
MA0259.10.291



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12894

Novel motifP-value
10.873
100.899
1000.55
1010.538
1020.11
1030.64
1040.611
1050.743
1060.0693
1070.0406
1080.317
1090.57
110.485
1100.23
1110.769
1120.762
1130.0573
1140.483
1150.367
1160.0203
1170.769
1180.899
1190.764
120.427
1200.231
1210.135
1220.14
1230.082
1240.907
1250.252
1260.671
1270.617
1289.43888e-4
1290.996
130.892
1300.916
1310.635
1320.455
1330.799
1340.878
1350.48
1360.615
1370.127
1380.405
1390.402
140.68
1400.768
1410.703
1420.712
1430.718
1440.466
1450.359
1460.501
1470.27
1480.221
1490.0453
150.733
1500.263
1510.187
1520.252
1530.382
1540.364
1550.133
1560.552
1570.715
1580.00226
1590.113
160.035
1600.124
1610.908
1620.0468
1630.504
1640.318
1650.411
1660.0709
1670.208
1680.934
1690.0921
170.507
180.316
190.0103
20.2
200.271
210.0978
220.142
230.0492
240.524
250.312
260.153
270.459
280.0634
290.76
30.624
300.361
310.257
322.49413e-9
330.246
340.436
350.93
360.161
370.278
380.911
390.146
40.203
400.533
410.0289
420.535
430.397
440.819
450.351
460.174
470.583
480.409
490.672
50.923
500.507
510.669
520.146
530.332
540.545
550.616
560.202
570.959
580.367
590.0628
60.719
600.437
610.731
620.814
630.42
640.941
650.225
660.38
670.647
680.76
690.174
70.513
700.81
710.197
720.159
730.344
740.14
750.882
760.788
770.307
780.593
790.0723
80.0647
800.32
810.289
820.339
830.694
840.966
850.0108
860.54
870.669
880.395
890.133
90.334
900.747
910.221
920.0273
930.595
940.782
950.792
960.215
970.253
980.468
995.03515e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12894


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002600 (smooth muscle cell of trachea)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000184 (human smooth muscle cell of trachea sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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