FF:11633-122C4: Difference between revisions

Latest revision as of 18:12, 4 June 2020

Name:	Mouse Astrocytes, donor3
Species:	Mouse (Mus musculus)
Library ID:	CNhs12107
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	NA
sex	NA
age	NA
cell type	astrocyte
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:4657
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004918

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12107		CAGE		DRX008812		DRR009684

Accession ID Mm9

Library id		BAM		CTSS
CNhs12107		DRZ001109		DRZ002494

Accession ID Mm10

Library id		BAM		CTSS
CNhs12107		DRZ012459		DRZ013844

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12107

0	0
1	0
10	0
100	0
1000	0.553
1001	-0.0631
1002	0.168
1003	0.3
1004	0
1005	-0.183
1006	-0.00807
1007	-0.466
1008	0
1009	-0.19
101	-0.555
1010	0
1011	-0.0513
1012	0
1013	0.0718
1014	0
1015	0.00735
1016	0.365
1017	0
1018	0
1019	0
102	0
1020	0.387
1021	0.179
1022	-0.029
1023	0
1024	-0.0899
1025	0
1026	0
1027	0
1028	0
1029	-0.176
103	0
1030	0
1031	0.514
1032	0.571
1033	-0.0665
1034	0
1035	0
1036	-0.183
1037	0
1038	-0.298
1039	0.163
104	0
1040	0.32
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12107

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0913
MA0003.1	MA0003.1	0.198
MA0004.1	MA0004.1	0.841
MA0006.1	MA0006.1	0.442
MA0007.1	MA0007.1	0.106
MA0009.1	MA0009.1	0.87
MA0014.1	MA0014.1	0.923
MA0017.1	MA0017.1	0.58
MA0018.2	MA0018.2	0.0242
MA0019.1	MA0019.1	0.917
MA0024.1	MA0024.1	0.00233
MA0025.1	MA0025.1	0.238
MA0027.1	MA0027.1	0.842
MA0028.1	MA0028.1	5.28889e-4
MA0029.1	MA0029.1	0.895
MA0030.1	MA0030.1	0.558
MA0031.1	MA0031.1	0.273
MA0035.2	MA0035.2	0.376
MA0038.1	MA0038.1	0.0936
MA0039.2	MA0039.2	0.859
MA0040.1	MA0040.1	0.309
MA0041.1	MA0041.1	0.157
MA0042.1	MA0042.1	0.587
MA0043.1	MA0043.1	0.183
MA0046.1	MA0046.1	4.37025e-4
MA0047.2	MA0047.2	0.427
MA0048.1	MA0048.1	0.624
MA0050.1	MA0050.1	5.82335e-6
MA0051.1	MA0051.1	1.82604e-4
MA0052.1	MA0052.1	0.177
MA0055.1	MA0055.1	0.553
MA0057.1	MA0057.1	0.511
MA0058.1	MA0058.1	0.94
MA0059.1	MA0059.1	0.137
MA0060.1	MA0060.1	0.487
MA0061.1	MA0061.1	0.386
MA0062.2	MA0062.2	3.92071e-9
MA0065.2	MA0065.2	0.165
MA0066.1	MA0066.1	0.235
MA0067.1	MA0067.1	0.465
MA0068.1	MA0068.1	0.644
MA0069.1	MA0069.1	0.44
MA0070.1	MA0070.1	0.696
MA0071.1	MA0071.1	0.297
MA0072.1	MA0072.1	0.764
MA0073.1	MA0073.1	0.678
MA0074.1	MA0074.1	0.194
MA0076.1	MA0076.1	1.49376e-5
MA0077.1	MA0077.1	0.0575
MA0078.1	MA0078.1	0.0519
MA0079.2	MA0079.2	0.643
MA0080.2	MA0080.2	2.73016e-5
MA0081.1	MA0081.1	0.0136
MA0083.1	MA0083.1	0.885
MA0084.1	MA0084.1	0.269
MA0087.1	MA0087.1	0.45
MA0088.1	MA0088.1	0.921
MA0090.1	MA0090.1	0.00819
MA0091.1	MA0091.1	0.954
MA0092.1	MA0092.1	0.449
MA0093.1	MA0093.1	0.979
MA0099.2	MA0099.2	4.49846e-4
MA0100.1	MA0100.1	0.796
MA0101.1	MA0101.1	0.508
MA0102.2	MA0102.2	0.0649
MA0103.1	MA0103.1	0.98
MA0104.2	MA0104.2	0.854
MA0105.1	MA0105.1	0.13
MA0106.1	MA0106.1	0.224
MA0107.1	MA0107.1	0.335
MA0108.2	MA0108.2	0.968
MA0111.1	MA0111.1	0.27
MA0112.2	MA0112.2	0.0378
MA0113.1	MA0113.1	0.215
MA0114.1	MA0114.1	0.875
MA0115.1	MA0115.1	0.325
MA0116.1	MA0116.1	0.0977
MA0117.1	MA0117.1	0.221
MA0119.1	MA0119.1	0.0352
MA0122.1	MA0122.1	0.276
MA0124.1	MA0124.1	0.833
MA0125.1	MA0125.1	0.972
MA0131.1	MA0131.1	0.19
MA0135.1	MA0135.1	0.176
MA0136.1	MA0136.1	2.47507e-7
MA0137.2	MA0137.2	0.0428
MA0138.2	MA0138.2	0.589
MA0139.1	MA0139.1	0.644
MA0140.1	MA0140.1	0.0207
MA0141.1	MA0141.1	0.0252
MA0142.1	MA0142.1	0.0374
MA0143.1	MA0143.1	0.0491
MA0144.1	MA0144.1	0.27
MA0145.1	MA0145.1	0.152
MA0146.1	MA0146.1	0.129
MA0147.1	MA0147.1	0.563
MA0148.1	MA0148.1	0.169
MA0149.1	MA0149.1	0.198
MA0150.1	MA0150.1	0.44
MA0152.1	MA0152.1	0.46
MA0153.1	MA0153.1	0.00832
MA0154.1	MA0154.1	0.0941
MA0155.1	MA0155.1	0.16
MA0156.1	MA0156.1	2.62772e-11
MA0157.1	MA0157.1	0.346
MA0159.1	MA0159.1	0.159
MA0160.1	MA0160.1	0.198
MA0162.1	MA0162.1	0.122
MA0163.1	MA0163.1	0.0421
MA0164.1	MA0164.1	0.72
MA0258.1	MA0258.1	0.0886
MA0259.1	MA0259.1	0.483

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12107

Novel motif	Logo	P-value
1	1	0.652
10	10	0.852
100	100	0.556
101	101	0.72
102	102	0.818
103	103	0.944
104	104	0.474
105	105	1
106	106	0.0202
107	107	0.0856
108	108	0.492
109	109	0.0653
11	11	0.096
110	110	0.563
111	111	0.511
112	112	0.851
113	113	0.704
114	114	0.171
115	115	0.705
116	116	0.0107
117	117	0.512
118	118	0.477
119	119	0.799
12	12	0.914
120	120	0.677
121	121	0.761
122	122	0.154
123	123	0.347
124	124	0.802
125	125	0.68
126	126	0.896
127	127	0.631
128	128	0.0594
129	129	0.426
13	13	0.805
130	130	0.491
131	131	0.9
132	132	0.00909
133	133	0.108
134	134	0.915
135	135	0.0561
136	136	0.816
137	137	0.374
138	138	0.912
139	139	0.854
14	14	0.335
140	140	0.203
141	141	0.674
142	142	0.47
143	143	0.0529
144	144	0.944
145	145	0.407
146	146	0.908
147	147	0.86
148	148	0.761
149	149	0.324
15	15	0.706
150	150	0.393
151	151	0.634
152	152	0.0476
153	153	0.302
154	154	0.565
155	155	0.367
156	156	0.133
157	157	0.105
158	158	0.154
159	159	0.201
160	160	0.734
161	161	0.746
162	162	0.13
163	163	0.15
164	164	0.102
165	165	0.777
166	166	0.399
167	167	0.0495
168	168	0.567
169	169	0.161
17	17	0.35
18	18	0.228
19	19	0.159
2	2	0.195
20	20	0.795
21	21	0.115
22	22	0.137
23	23	0.0226
24	24	0.307
25	25	0.68
26	26	0.931
27	27	0.278
28	28	0.834
29	29	0.728
3	3	0.352
30	30	0.233
31	31	0.34
32	32	0.0348
33	33	0.78
34	34	0.117
35	35	0.688
36	36	0.986
37	37	0.157
38	38	0.389
39	39	0.238
4	4	0.288
40	40	0.367
41	41	0.197
42	42	0.346
43	43	0.273
44	44	0.103
45	45	0.306
46	46	0.916
47	47	0.394
48	48	0.695
49	49	0.612
5	5	0.623
50	50	0.259
51	51	0.798
52	52	0.125
53	53	0.982
54	54	0.876
55	55	0.205
56	56	0.219
57	57	0.07
58	58	0.612
59	59	0.0176
6	6	0.488
60	60	0.086
61	61	0.766
62	62	0.841
63	63	0.0187
64	64	0.172
65	65	0.055
66	66	0.613
67	67	0.297
68	68	0.728
69	69	0.251
7	7	0.971
70	70	0.0385
71	71	0.315
72	72	0.997
73	73	0.0776
74	74	0.892
75	75	0.879
76	76	0.292
77	77	0.00951
78	78	0.0711
79	79	0.992
8	8	0.0297
80	80	0.442
81	81	0.313
82	82	0.573
83	83	0.891
84	84	0.268
85	85	0.00419
86	86	0.972
87	87	0.0718
88	88	0.115
89	89	0.601
9	9	0.843
90	90	0.67
91	91	0.0863
92	92	0.856
93	93	0.456
94	94	0.736
95	95	0.04
96	96	0.823
97	97	0.967
98	98	0.0034
99	99	0.115

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12107

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000105 mouse astrocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000105 (mouse astrocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004918
+|accession_numbers=CAGE;DRX008812;DRR009684;DRZ001109;DRZ002494;DRZ012459;DRZ013844
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.45!320.57!Olig1;;chr11:116196664..116196679,-!p1@Foxj1!2.24!260.19!Foxj1;;chr5:138199361..138199441,+!p2@Tsc22d4!2.10!225.69!Tsc22d4;;chr3:34548909..34548927,+!p1@Sox2!1.85!116.44!Sox2;;chrX:55284180..55284195,+!p2@Zic3!1.83!66.13!Zic3;;chr16:91270091..91270143,+!p2@Olig1!1.72!51.75!Olig1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.67!57.50!Pou3f3;;chr10:84218895..84218909,+!p1@Rfx4!1.63!41.69!Rfx4;;chr8:12395603..12395621,+!p1@Sox1!1.60!38.81!Sox1;;chr16:91225808..91225824,+!p1@Olig2!1.57!35.94!Olig2;;chr7:25292141..25292158,+!p2@Zfp428!1.51!106.38!Zfp428;;chr5:28492230..28492257,+!p1@En2!1.49!30.19!En2;;chr14:122874619..122874634,+!p1@Zic2!1.49!30.19!Zic2;;chrX:55283799..55283813,+!p1@Zic3!1.43!25.88!Zic3;;chr8:94881872..94881887,+!p2@Irx5!1.42!27.31!Irx5;;chr13:72766250..72766273,+!p1@Irx2!1.41!37.38!Irx2;;chr3:34548946..34548972,+!p2@Sox2!1.39!25.88!Sox2;;chr14:49287186..49287225,-!p1@Otx2!1.38!23.00!Otx2;;chrX:108009761..108009788,+!p1@Pou3f4!1.38!23.00!Pou3f4;;chr10:86956396..86956411,-!p1@Ascl1!1.34!31.63!Ascl1;;chr14:118636214..118636235,-!p1@Sox21!1.33!24.44!Sox21;;chr10:84218800..84218829,+!p2@Rfx4!1.32!20.13!Rfx4;;chr12:54349410..54349461,+!p1@Npas3!1.30!23.00!Npas3;;chr12:34642510..34642530,+!p1@Twist1!1.29!57.50!Twist1;;chr13:72766279..72766296,+!p2@Irx2!1.29!27.31!Irx2;;chr9:91260594..91260612,-!p1@Zic1!1.29!18.69!Zic1;;chr13:72101178..72101203,-!p1@Irx1!1.27!27.31!Irx1;;chr8:87297280..87297326,-!p2@Nfix!1.26!40.25!Nfix;;chr8:94325321..94325366,-!p1@Irx3!1.25!40.25!Irx3;;chrX:137077716..137077734,-!p1@Tsc22d3!1.23!113.56!Tsc22d3;;chrX:58146612..58146615,-!p1@Sox3!1.23!15.81!Sox3;;chr14:118636238..118636257,-!p2@Sox21!1.23!15.81!Sox21;;chr1:78193687..78193692,-!p1@Pax3!1.23!15.81!Pax3;;chr16:15887371..15887385,+!p1@Cebpd!1.20!490.20!Cebpd;;chr7:25292160..25292213,+!p3@Zfp428!1.19!35.94!Zfp428;;chr9:91260616..91260653,-!p2@Zic1!1.19!14.38!Zic1;;chr8:87297878..87297935,-!p3@Nfix!1.17!30.19!Nfix;;chrX:90531838..90531861,+!p1@Arx!1.17!17.25!Arx;;chr9:106356278..106356292,+!p3@Pcbp4!1.16!23.00!Pcbp4;;chr4:22415443..22415506,-!p1@Pou3f2!1.14!12.94!Pou3f2;;chr11:21901608..21901634,-!p1@Otx1!1.14!12.94!Otx1;;chr19:28754692..28754757,-!p1@Glis3!1.11!48.88!Glis3;;chr5:77543897..77543911,-!p2@Hopx!1.11!23.00!Hopx;;chr7:147234982..147234988,-!p1@Msx3!1.10!11.50!Msx3;;chr2:30700881..30700916,+!p1@Prrx2!1.09!21.56!Prrx2;;chr4:135699731..135699747,+!p1@Id3!1.08!1250.65!Id3;;chr7:17647736..17647772,-!p1@Hif3a!1.06!37.38!Hif3a;;chr13:72101161..72101177,-!p2@Irx1!1.05!14.38!Irx1;;chr3:34549096..34549111,+!p3@Sox2!1.04!10.06!Sox2;;chr8:87298020..87298041,-!p9@Nfix!1.04!10.06!Nfix;;chr9:106356243..106356264,+!p2@Pcbp4!1.03!43.13!Pcbp4;;chr6:90412608..90412630,+!p2@Klf15!1.03!20.13!Klf15;;chr17:25707623..25707639,-!p1@Sox8!0.99!38.81!Sox8;;chr17:56970339..56970428,-!p1@Rfx2!0.98!27.31!Rfx2;;chr7:146768691..146768707,-!p1@Nkx6-2!0.98!8.63!Nkx6-2;;chr9:91266261..91266282,+!p5@Zic4!0.98!8.63!Zic4;;chr1:91827728..91827743,-!p2@Gbx2!0.98!8.63!Gbx2;;chr8:72356384..72356434,+!p2@Pbx4!0.97!12.94!Pbx4;;chr6:90412556..90412581,+!p3@Klf15!0.94!17.25!Klf15;;chr11:5761889..5761969,+!p1@Aebp1!0.93!324.88!Aebp1;;chr13:99124189..99124205,+!p1@Foxd1!0.93!11.50!Foxd1;;chr7:119822957..119822980,+!p2@Tead1!0.92!37.38!Tead1;;chr6:72185232..72185272,-!p1@Atoh8!0.92!21.56!Atoh8;;chr10:67375342..67375365,-!p3@Zfp365!0.91!7.19!Zfp365;;chr10:84218931..84218942,+!p4@Rfx4!0.91!7.19!Rfx4;;chr1:78193407..78193420,-!p2@Pax3!0.91!7.19!Pax3;;chr1:122499088..122499099,+!p2@En1!0.91!7.19!En1;;chr11:60023912..60023930,-!p1@Srebf1!0.90!178.25!Srebf1;;chr8:72356532..72356611,+!p1@Pbx4!0.90!30.19!Pbx4;;chr19:19185671..19185693,-!p1@Rorb!0.90!17.25!Rorb;;chr10:119913278..119913298,-!p2@Hmga2!0.89!15.81!Hmga2;;chr13:78338076..78338104,-!p4@Nr2f1!0.89!8.63!Nr2f1;;chr8:94325814..94325839,-!p2@Irx3!0.88!14.38!Irx3;;chr13:78339476..78339515,-!p1@Nr2f1!0.87!10.06!Nr2f1;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.87!8.63!Hoxb2;;chr9:106356211..106356242,+!p1@Pcbp4!0.85!126.50!Pcbp4;;chr13:78339428..78339466,-!p2@Nr2f1!0.85!8.63!Nr2f1;;chr13:78339382..78339420,-!p3@Nr2f1!0.85!7.19!Nr2f1;;chr9:106356265..106356276,+!p4@Pcbp4!0.84!10.06!Pcbp4;;chr6:72185210..72185228,-!p3@Atoh8!0.83!10.06!Atoh8;;chr8:87297330..87297365,-!p5@Nfix!0.83!5.75!Nfix;;chr14:122874718..122874729,+!p3@Zic2!0.83!5.75!Zic2;;chr14:122874593..122874610,+!p2@Zic2!0.83!5.75!Zic2;;chr14:52948124..52948148,-!p7@Sall2!0.83!5.75!Sall2;;chr10:119913266..119913277,-!p6@Hmga2!0.83!5.75!Hmga2;;chr11:21901587..21901604,-!p2@Otx1!0.83!5.75!Otx1;;chr15:95485240..95485257,-!p1@Dbx2!0.83!5.75!Dbx2;;chr2:147012101..147012118,-!p3@Nkx2-2!0.83!5.75!Nkx2-2;;chr11:112643496..112643562,+!p1@Sox9!0.81!218.50!Sox9;;chr5:77524250..77524300,-!p1@Hopx!0.81!119.31!Hopx;;chr7:25292331..25292421,+!p1@Zfp428!0.81!41.69!Zfp428;;chr13:31898637..31898653,+!p2@Foxc1!0.81!10.06!Foxc1;;chr6:108610766..108610781,+!p2@Bhlhe40!0.80!10.06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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0000105
 |is_obsolete=
+|library_id=CNhs12107
+|library_id_phase_based=2:CNhs12107
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11633
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11633
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Astrocytes%252c%2520donor3.CNhs12107.11633-122C4.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Astrocytes%252c%2520donor3.CNhs12107.11633-122C4.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Astrocytes%252c%2520donor3.CNhs12107.11633-122C4.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Astrocytes%252c%2520donor3.CNhs12107.11633-122C4.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Astrocytes%252c%2520donor3.CNhs12107.11633-122C4.mm9.nobarcode.rdna.fa.gz
 |name=Mouse Astrocytes, donor3
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12107,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,-0.95722412156211,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0.294138727439711,-0.558422792324031,0,0,0,0,0,-0.015848128831157,0,-0.13837041026046,-0.984211366477826,-0.269868638010351,0.72530523208327,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.0428469550828748,0,0,0,0,-0.0589726526846379,-0.0221089679791905,-0.310650657339386,-0.158091042771083,-0.140687683267293,0,-0.0780086007519514,-0.0853400338596602,0,0,0,0,0.00334216284379399,0.698283044217442,-0.0788315948399074,0,0,0,0,0,0,0.45247923510099,0.302826614657053,0.666782349341885,0,0,0,0.299221965294847,0
@@ Line 62: / Line 76: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 82: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11633-122C4;search_select_hide=table117:11633-122C4
 }}

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FF:11633-122C4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:12, 4 June 2020

CNhs12107

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0