FF:11554-120C6: Difference between revisions

Latest revision as of 18:08, 4 June 2020

Name:	Fibroblast - skin walker warburg, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11352
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	1 month old neonate
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	Splicing (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005209

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11352		CAGE		DRX008292		DRR009164

Accession ID Hg19

Library id		BAM		CTSS
CNhs11352		DRZ000589		DRZ001974

Accession ID Hg38

Library id		BAM		CTSS
CNhs11352		DRZ011939		DRZ013324

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0807
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.283
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.57
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0296
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.166
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.208
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.068
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.305
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.208
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.149
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.179
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.242
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.127
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0343
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.324
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.214
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.372
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.068
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.348
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.267
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.372
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.34
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11352

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.227
MA0003.1	MA0003.1	0.381
MA0004.1	MA0004.1	0.0413
MA0006.1	MA0006.1	0.0851
MA0007.1	MA0007.1	0.985
MA0009.1	MA0009.1	0.318
MA0014.1	MA0014.1	0.773
MA0017.1	MA0017.1	0.352
MA0018.2	MA0018.2	3.44188e-4
MA0019.1	MA0019.1	0.47
MA0024.1	MA0024.1	0.168
MA0025.1	MA0025.1	0.00832
MA0027.1	MA0027.1	0.32
MA0028.1	MA0028.1	0.685
MA0029.1	MA0029.1	0.247
MA0030.1	MA0030.1	0.0475
MA0031.1	MA0031.1	0.0306
MA0035.2	MA0035.2	0.444
MA0038.1	MA0038.1	0.203
MA0039.2	MA0039.2	0.732
MA0040.1	MA0040.1	0.974
MA0041.1	MA0041.1	0.664
MA0042.1	MA0042.1	0.767
MA0043.1	MA0043.1	2.80858e-5
MA0046.1	MA0046.1	0.368
MA0047.2	MA0047.2	0.159
MA0048.1	MA0048.1	0.0224
MA0050.1	MA0050.1	8.37969e-4
MA0051.1	MA0051.1	0.0151
MA0052.1	MA0052.1	0.203
MA0055.1	MA0055.1	0.032
MA0057.1	MA0057.1	0.0778
MA0058.1	MA0058.1	0.00631
MA0059.1	MA0059.1	0.792
MA0060.1	MA0060.1	0.278
MA0061.1	MA0061.1	0.105
MA0062.2	MA0062.2	0.0591
MA0065.2	MA0065.2	0.679
MA0066.1	MA0066.1	0.272
MA0067.1	MA0067.1	2.59093e-4
MA0068.1	MA0068.1	0.546
MA0069.1	MA0069.1	0.172
MA0070.1	MA0070.1	0.275
MA0071.1	MA0071.1	0.685
MA0072.1	MA0072.1	0.876
MA0073.1	MA0073.1	0.892
MA0074.1	MA0074.1	0.741
MA0076.1	MA0076.1	0.886
MA0077.1	MA0077.1	0.916
MA0078.1	MA0078.1	0.478
MA0079.2	MA0079.2	0.328
MA0080.2	MA0080.2	2.15071e-8
MA0081.1	MA0081.1	0.00252
MA0083.1	MA0083.1	1.09203e-6
MA0084.1	MA0084.1	0.246
MA0087.1	MA0087.1	0.8
MA0088.1	MA0088.1	0.103
MA0090.1	MA0090.1	2.93524e-5
MA0091.1	MA0091.1	0.217
MA0092.1	MA0092.1	0.0466
MA0093.1	MA0093.1	0.0649
MA0099.2	MA0099.2	0.0212
MA0100.1	MA0100.1	0.491
MA0101.1	MA0101.1	0.00273
MA0102.2	MA0102.2	0.0161
MA0103.1	MA0103.1	9.05919e-5
MA0104.2	MA0104.2	0.0295
MA0105.1	MA0105.1	0.826
MA0106.1	MA0106.1	0.0273
MA0107.1	MA0107.1	0.0025
MA0108.2	MA0108.2	1.90973e-5
MA0111.1	MA0111.1	0.0538
MA0112.2	MA0112.2	0.0271
MA0113.1	MA0113.1	0.283
MA0114.1	MA0114.1	0.0893
MA0115.1	MA0115.1	0.339
MA0116.1	MA0116.1	0.473
MA0117.1	MA0117.1	0.718
MA0119.1	MA0119.1	0.438
MA0122.1	MA0122.1	0.278
MA0124.1	MA0124.1	0.378
MA0125.1	MA0125.1	0.493
MA0131.1	MA0131.1	0.581
MA0135.1	MA0135.1	0.464
MA0136.1	MA0136.1	1.64909e-6
MA0137.2	MA0137.2	0.643
MA0138.2	MA0138.2	0.845
MA0139.1	MA0139.1	0.548
MA0140.1	MA0140.1	0.537
MA0141.1	MA0141.1	0.552
MA0142.1	MA0142.1	0.179
MA0143.1	MA0143.1	0.602
MA0144.1	MA0144.1	0.764
MA0145.1	MA0145.1	0.398
MA0146.1	MA0146.1	0.571
MA0147.1	MA0147.1	0.123
MA0148.1	MA0148.1	0.181
MA0149.1	MA0149.1	0.962
MA0150.1	MA0150.1	0.472
MA0152.1	MA0152.1	0.0333
MA0153.1	MA0153.1	0.594
MA0154.1	MA0154.1	0.369
MA0155.1	MA0155.1	0.587
MA0156.1	MA0156.1	0.00183
MA0157.1	MA0157.1	0.161
MA0159.1	MA0159.1	0.53
MA0160.1	MA0160.1	0.0634
MA0162.1	MA0162.1	0.0461
MA0163.1	MA0163.1	0.125
MA0164.1	MA0164.1	0.864
MA0258.1	MA0258.1	0.849
MA0259.1	MA0259.1	0.983

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11352

Novel motif	Logo	P-value
1	1	0.314
10	10	0.385
100	100	0.994
101	101	0.459
102	102	0.16
103	103	0.952
104	104	0.922
105	105	0.938
106	106	0.79
107	107	0.45
108	108	0.818
109	109	0.299
11	11	0.691
110	110	0.277
111	111	0.341
112	112	0.984
113	113	0.0337
114	114	0.784
115	115	0.583
116	116	0.171
117	117	0.416
118	118	0.745
119	119	0.681
12	12	0.851
120	120	0.744
121	121	0.323
122	122	0.775
123	123	1.63445e-5
124	124	0.837
125	125	0.709
126	126	0.398
127	127	0.896
128	128	0.997
129	129	0.962
13	13	0.775
130	130	0.0446
131	131	0.46
132	132	0.452
133	133	0.442
134	134	0.28
135	135	0.229
136	136	0.291
137	137	0.26
138	138	0.21
139	139	0.0156
14	14	0.274
140	140	0.212
141	141	0.0391
142	142	0.899
143	143	0.583
144	144	0.9
145	145	0.48
146	146	0.888
147	147	0.0974
148	148	0.0844
149	149	0.0842
15	15	0.251
150	150	0.362
151	151	0.939
152	152	0.053
153	153	0.868
154	154	0.477
155	155	0.0118
156	156	0.765
157	157	0.0475
158	158	0.00556
159	159	0.522
16	16	0.187
160	160	0.303
161	161	0.353
162	162	0.396
163	163	0.866
164	164	0.412
165	165	0.228
166	166	0.0686
167	167	0.186
168	168	0.733
169	169	0.0664
17	17	0.714
18	18	0.121
19	19	0.0269
2	2	0.345
20	20	0.182
21	21	0.162
22	22	0.215
23	23	0.612
24	24	0.975
25	25	0.856
26	26	0.72
27	27	0.71
28	28	0.232
29	29	0.747
3	3	0.98
30	30	0.035
31	31	0.945
32	32	2.1789e-5
33	33	0.999
34	34	0.66
35	35	0.355
36	36	0.074
37	37	0.229
38	38	0.613
39	39	0.477
4	4	0.495
40	40	0.889
41	41	0.68
42	42	0.951
43	43	0.924
44	44	0.954
45	45	0.437
46	46	0.616
47	47	0.882
48	48	0.843
49	49	0.463
5	5	0.737
50	50	0.262
51	51	0.997
52	52	0.899
53	53	0.381
54	54	0.681
55	55	0.866
56	56	0.93
57	57	0.665
58	58	0.323
59	59	0.0952
6	6	0.905
60	60	0.562
61	61	0.242
62	62	0.779
63	63	0.559
64	64	0.885
65	65	0.695
66	66	0.224
67	67	0.859
68	68	0.844
69	69	0.434
7	7	0.626
70	70	0.0388
71	71	0.474
72	72	0.982
73	73	0.0575
74	74	0.365
75	75	0.715
76	76	0.128
77	77	0.0128
78	78	0.125
79	79	0.0659
8	8	0.607
80	80	0.965
81	81	0.882
82	82	0.85
83	83	0.192
84	84	0.494
85	85	0.418
86	86	0.801
87	87	0.178
88	88	0.416
89	89	0.0758
9	9	0.429
90	90	0.0564
91	91	0.822
92	92	0.977
93	93	0.183
94	94	0.562
95	95	0.194
96	96	0.64
97	97	0.832
98	98	0.288
99	99	8.93986e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11352

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000252 human fibroblast - skin walker warburg sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000252 (human fibroblast - skin walker warburg sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005209
-|accession_numbers=CAGE;DRX008292;DRR009164;DRZ000589;DRZ001974
+|accession_numbers=CAGE;DRX008292;DRR009164;DRZ000589;DRZ001974;DRZ011939;DRZ013324
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.99!96.14!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.72!65.79!PRRX2;;chr1:197886461..197886558,+!p1@LHX9!1.70!49.17!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.57!97.33!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.96!HOXC5;;chr6:10415276..10415341,-!p2@TFAP2A!1.43!31.37!TFAP2A;;chr11:46299199..46299233,+!p1@CREB3L1!1.38!115.81!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.38!30.86!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.32!22.55!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.30!18.99!TCF21;;chr4:81118647..81118666,+!p1@PRDM8!1.26!22.89!PRDM8;;chr6:1389789..1389821,+!p1@FOXF2!1.24!22.38!FOXF2;;chr2:239756739..239756755,+!p2@TWIST2!1.21!25.94!TWIST2;;chr6:10412600..10412637,-!p1@TFAP2A!1.20!24.93!TFAP2A;;chr15:57511609..57511651,+!p2@TCF12!1.20!24.76!TCF12;;chr2:239756671..239756732,+!p1@TWIST2!1.19!46.29!TWIST2;;chr7:27224842..27224872,-!p1@HOXA11!1.19!14.58!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.18!14.07!HOXA11;;chr10:28034739..28034756,-!p1@MKX!1.07!10.85!MKX;;chr3:128206762..128206781,-!p2@GATA2!1.06!65.62!GATA2;;chr11:65686802..65686818,+!p6@DRAP1!1.03!17.13!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!1.02!43.75!FOXD1;;chr2:176969228..176969260,+!p1@HOXD11!1.02!9.50!HOXD11;;chr12:54380404..54380433,+!p3@HOXC10!1.01!9.16!HOXC10;;chr5:321810..321877,+!p1@AHRR!0.99!28.83!AHRR;;chr11:65686732..65686756,+!p2@DRAP1!0.98!36.96!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.24!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!0.95!13.40!FOXD1;;chr3:128212033..128212051,-!p1@GATA2!0.94!7.63!GATA2;;chr5:139492456..139492489,+!p7@PURA!0.91!7.12!PURA;;chr7:27213893..27213954,-!p1@HOXA10!0.91!7.12!HOXA10;;chr1:23885981..23886002,-!p1@ID3!0.90!1272.04!ID3;;chr12:53614115..53614154,-!p1@RARG!0.89!38.32!RARG;;chr16:86544113..86544145,+!p1@FOXF1!0.89!8.48!FOXF1;;chr2:223163706..223163730,-!p1@PAX3!0.89!6.78!PAX3;;chr5:2751762..2751784,-!p1@IRX2!0.89!6.78!IRX2;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.20!TBX2;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.99!OSR1;;chr10:119303078..119303169,+!p2@EMX2!0.88!6.61!EMX2;;chr16:86600426..86600441,+!p1@FOXC2!0.87!16.62!FOXC2;;chr3:157823517..157823562,-!p1@SHOX2!0.86!6.78!SHOX2;;chr4:174450089..174450153,-!p2@HAND2!0.85!6.10!HAND2;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.93!KDM5D;;chr6:34204921..34204939,+!p3@HMGA1!0.83!186.01!HMGA1;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.44!PRRX1;;chr10:63809106..63809127,+!p1@ARID5B!0.82!82.07!ARID5B;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.64!DRAP1;;chr12:115121962..115121987,-!p1@TBX3!0.81!49.85!TBX3;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.38!SIX1;;chr2:66662281..66662308,+!p1@MEIS1!0.81!20.01!MEIS1;;chr2:85981107..85981120,+!p3@ATOH8!0.81!5.43!ATOH8;;chr16:31076332..31076388,-!p3@ZNF668!0.81!5.43!ZNF668;;chr12:54378923..54378966,+!p1@HOXC10!0.81!5.43!HOXC10;;chr10:63809013..63809041,+!p3@ARID5B!0.80!31.54!ARID5B;;chr12:54380036..54380091,+!p4@HOXC10!0.80!5.26!HOXC10;;chr19:13134772..13134822,+!p2@NFIX!0.79!7.80!NFIX;;chr11:65687222..65687240,+!p7@DRAP1!0.79!6.78!DRAP1;;chr6:85473156..85473210,-!p2@TBX18!0.79!6.44!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.78!121.91!AEBP1;;chr2:85980951..85981004,+!p1@ATOH8!0.78!8.48!ATOH8;;chr1:170633262..170633285,+!p3@PRRX1!0.78!5.77!PRRX1;;chr7:27239703..27239715,-!p1@HOXA13!0.78!5.09!HOXA13;;chr12:114845810..114845824,-!p1@TBX5!0.78!5.09!TBX5;;chr12:54379029..54379057,+!p2@HOXC10!0.78!5.09!HOXC10;;chr12:66218255..66218304,+!p3@HMGA2!0.77!14.24!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.77!7.80!ZBTB38;;chr20:30193083..30193098,+!p1@ID1!0.76!423.22!ID1;;chr11:65686952..65686975,+!p5@DRAP1!0.75!27.98!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.75!5.43!TFAP2A;;chr12:54393880..54393962,+!p1@HOXC9!0.75!4.58!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.75!4.58!HOXC5;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.58!NPAS1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.58!PRRX1;;chr16:51185172..51185197,-!p1@SALL1!0.75!4.58!SALL1;;chr8:67525443..67525459,-!p2@MYBL1!0.74!6.95!MYBL1;;chr5:72743793..72743855,-!p4@FOXD1!0.74!5.43!FOXD1;;chr15:76629123..76629151,+!p1@ISL2!0.74!5.09!ISL2;;chr11:65687243..65687276,+!p8@DRAP1!0.73!6.10!DRAP1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.41!RUNX1T1;;chr2:172967242..172967265,-!p2@DLX2!0.73!4.41!DLX2;;chr4:174451370..174451387,-!p1@HAND2!0.73!4.41!HAND2;;chr6:19837592..19837621,+!p1@ID4!0.72!29.16!ID4;;chr2:121493425..121493474,+!p1@GLI2!0.72!10.17!GLI2;;chr7:27205136..27205164,-!p1@HOXA9!0.72!4.24!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.43!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!0.70!6.44!PITX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.70!4.07!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.70!4.07!ZFY;;chr1:170633058..170633084,+!p5@PRRX1!0.70!4.07!PRRX1;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.58!BNC1;;chr6:100912752..100912778,-!p2@SIM1!0.69!3.90!SIM1;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr7:27239740..27239759,-!p2@HOXA13!0.69!3.90!HOXA13;;chr2:176969179..176969226,+!p2@HOXD11!0.69!3.90!HOXD11;;chr12:124873357..124873401,-!p1@NCOR2!0.68!50.70!NCOR2;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.33!HMGA2;;chr2:172967621..172967637,-!p1@DLX2!0.67!11.02!DLX2;;chr2:85981222..85981259,+!p2@ATOH8!0.67!6.44!ATOH8;;chr6:100912785..100912822,-!p1@SIM1!0.67!3.73!SIM1;;chr8:49833978..49833996,-!p1@SNAI2!0.66!85.63!SNAI2;;chr1:209979467..209979494,-!p1@IRF6!0.66!4.07!IRF6;;chr1:170632723..170632739,+!p8@PRRX1!0.66!3.56!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!0.66!3.56!SOX11;;chr2:85981073..85981091,+!p5@ATOH8!0.66!3.56!ATOH8;;chr18:52969674..52969685,-!p24@TCF4!0.66!3.56!TCF4;;chr3:52001448..52001478,-!p2@PCBP4!0.65!56.80!PCBP4;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.26!SNAI2;;chr15:37392724..37392757,-!p1@MEIS2!0.65!18.48!MEIS2;;chr14:24837368..24837401,+!p1@NFATC4!0.64!8.82!NFATC4;;chr15:96869255..96869291,+!p6@NR2F2!0.64!6.61!NR2F2;;chr15:37392703..37392717,-!p8@MEIS2!0.64!5.09!MEIS2;;chr12:114843940..114843955,-!p2@TBX5!0.64!3.39!TBX5;;chr1:119530493..119530572,-!p1@TBX15!0.64!3.39!TBX15;;chr2:172949484..172949522,+!p1@DLX1!0.64!3.39!DLX1;;chr6:85474299..85474324,-!p1@TBX18!0.63!6.44!TBX18;;chr8:99956662..99956684,+!p1@OSR2!0.63!5.43!OSR2;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.24!FOXD1;;chr15:96869292..96869320,+!p15@NR2F2!0.61!4.75!NR2F2;;chr6:1389824..1389840,+!p3@FOXF2!0.61!3.05!FOXF2;;chr1:197886421..197886432,+!p2@LHX9!0.61!3.05!LHX9;;chr10:63809077..63809089,+!p5@ARID5B!0.60!7.29!ARID5B;;chr12:115122005..115122016,-!p3@TBX3!0.60!3.73!TBX3;;chr2:66662249..66662267,+!p2@MEIS1!0.59!13.23!MEIS1;;chr12:80085061..80085119,-!p6@PAWR!0.59!5.09!PAWR;;chr18:53068911..53068935,-!p4@TCF4!0.59!3.39!TCF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.88!CREB3L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.59!2.88!TFAP2A;;chr18:56532100..56532130,+!p1@ZNF532!0.58!5.77!ZNF532;;chr15:37390850..37390909,-!p3@MEIS2!0.57!6.10!MEIS2;;chr17:59477275..59477286,+!p3@TBX2!0.57!3.90!TBX2;;chr5:43067636..43067674,+!p6@ZNF131!0.57!3.90!ZNF131;;chr19:45260775..45260838,+!p5@BCL3!0.57!3.73!BCL3;;chr1:110613238..110613272,-!p1@ALX3!0.57!2.71!ALX3;;chr1:170632115..170632136,+!p9@PRRX1!0.57!2.71!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.57!2.71!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.57!2.71!PRRX1;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.71!FOXL1;;chr4:4861385..4861398,+!p1@MSX1!0.56!9.16!MSX1;;chr3:52001426..52001447,-!p3@PCBP4!0.55!8.65!PCBP4;;chr7:19157043..19157088,-!p2@TWIST1!0.55!7.46!TWIST1;;chr7:1577899..1577943,+!p3@MAFK!0.55!2.54!MAFK;;chr2:172950227..172950249,+!p2@DLX1!0.55!2.54!DLX1;;chr2:176969097..176969109,+!p3@HOXD11!0.55!2.54!HOXD11;;chr2:85981008..85981025,+!p7@ATOH8!0.55!2.54!ATOH8;;chr3:128207349..128207386,-!p3@GATA2!0.55!2.54!GATA2;;chr15:96869165..96869183,+!p20@NR2F2!0.55!2.54!NR2F2;;chr15:66994561..66994597,+!p2@SMAD6!0.54!6.95!SMAD6;;chr2:71127699..71127744,+!p1@VAX2!0.54!5.93!VAX2;;chr10:63809090..63809097,+!p7@ARID5B!0.54!3.73!ARID5B;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.54!2.71!GLIS1;;chr2:85980919..85980942,+!p4@ATOH8!0.54!2.71!ATOH8;;chr11:65667884..65667895,-!p2@FOSL1!0.53!11.53!FOSL1;;chr11:46316699..46316719,+!p10@CREB3L1!0.53!2.37!CREB3L1;;chr12:54366975..54367001,+!p1@HOXC11!0.53!2.37!HOXC11;;chr12:54394309..54394336,+!p2@HOXC9!0.53!2.37!HOXC9;;chr2:176969124..176969155,+!p5@HOXD11!0.53!2.37!HOXD11;;chr2:85981027..85981047,+!p8@ATOH8!0.53!2.37!ATOH8;;chr6:1389989..1390019,+!p2@FOXF2!0.53!2.37!FOXF2;;chr19:12203100..12203132,+!p1@ZNF788!0.52!5.43!ZNF788;;chr12:66218183..66218209,+!p4@HMGA2!0.52!5.09!HMGA2;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.92!AEBP1;;chr12:66218212..66218244,+!p5@HMGA2!0.52!3.73!HMGA2;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.82!MYBL2;;chr15:96874012..96874042,+!p2@NR2F2!0.51!25.94!NR2F2;;chr11:65687158..65687216,+!p4@DRAP1!0.51!16.45!DRAP1;;chr16:54964740..54964789,+!p1@IRX5!0.51!3.56!IRX5;;chr11:12696071..12696086,+!p3@TEAD1!0.51!3.22!TEAD1;;chr9:16870659..16870675,-!p2@BNC2!0.51!2.88!BNC2;;chr15:37392534..37392562,-!p10@MEIS2!0.51!2.54!MEIS2;;chr15:80843484..80843499,+!p5@ARNT2!0.51!2.20!ARNT2;;chr2:66662396..66662407,+!p4@MEIS1!0.51!2.20!MEIS1;;chr9:16705069..16705086,-!p3@BNC2!0.51!2.20!BNC2;;chr12:115122318..115122331,-!p2@TBX3!0.51!2.20!TBX3;;chr5:176738887..176738934,-!p1@MXD3!0.50!18.82!MXD3;;chr18:72922743..72922761,+!p3@TSHZ1!0.50!8.82!TSHZ1;;chr15:66994663..66994680,+!p1@SMAD6!0.50!6.27!SMAD6;;chr12:66218836..66218888,+!p1@HMGA2!0.49!26.11!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.49!16.45!FOXM1;;chr4:1873011..1873063,+!p2@WHSC1!0.49!8.99!WHSC1;;chr20:42543506..42543549,+!p2@TOX2!0.49!6.10!TOX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.49!3.90!FOXQ1;;chr20:62680984..62680999,-!p1@SOX18!0.49!3.05!SOX18;;chr7:44143997..44144008,+!p3@AEBP1!0.49!2.88!AEBP1;;chr6:31126291..31126399,+!p1@TCF19!0.48!25.43!TCF19;;chr12:124873852..124873881,-!p3@NCOR2!0.48!15.94!NCOR2;;chr10:63853436..63853442,+!p4@ARID5B!0.48!14.24!ARID5B;;chr2:121493492..121493537,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11554-120C6
 |is_a=EFO:0002091;;FF:0000252
@@ Line 46: / Line 52: @@
 |library_id=CNhs11352
 |library_id_phase_based=2:CNhs11352
-|name="Fibroblast - skin walker warburg, donor1"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11554
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11554
+|name=Fibroblast - skin walker warburg, donor1
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs11352,LSID769,release014,COMPLETED"
+|profile_hcage=CNhs11352,LSID769,release014,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11554-120C6;search_select_hide=table117:FF:11554-120C6
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FF:11554-120C6: Difference between revisions

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Latest revision as of 18:08, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0