FF:11523-119I2: Difference between revisions

Latest revision as of 18:06, 4 June 2020

Name:	Hepatocyte, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12340
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	NA
age	NA
cell type	hepatocyte
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC5205
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005826

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12340		CAGE		DRX008307		DRR009179

Accession ID Hg19

Library id		BAM		CTSS
CNhs12340		DRZ000604		DRZ001989

Accession ID Hg38

Library id		BAM		CTSS
CNhs12340		DRZ011954		DRZ013339

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005826

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10066.AGTCAA		sRNA-Seq		DRX037266		DRR041632

Accession ID Hg19

Library id		BAM		CTSS
SRhi10066.AGTCAA		DRZ007274

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.706
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.479
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0.783
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.019
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	1.113
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.681
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	1.047
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.789
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.903
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0685
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.663
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	1.047
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	1.242
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.356
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12340

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.793
MA0003.1	MA0003.1	0.0162
MA0004.1	MA0004.1	0.716
MA0006.1	MA0006.1	0.322
MA0007.1	MA0007.1	0.0701
MA0009.1	MA0009.1	0.424
MA0014.1	MA0014.1	0.481
MA0017.1	MA0017.1	7.32059e-20
MA0018.2	MA0018.2	3.65899e-4
MA0019.1	MA0019.1	0.935
MA0024.1	MA0024.1	0.0503
MA0025.1	MA0025.1	0.395
MA0027.1	MA0027.1	0.901
MA0028.1	MA0028.1	0.205
MA0029.1	MA0029.1	0.263
MA0030.1	MA0030.1	0.183
MA0031.1	MA0031.1	0.319
MA0035.2	MA0035.2	0.0241
MA0038.1	MA0038.1	0.135
MA0039.2	MA0039.2	0.493
MA0040.1	MA0040.1	0.671
MA0041.1	MA0041.1	0.766
MA0042.1	MA0042.1	0.727
MA0043.1	MA0043.1	0.0349
MA0046.1	MA0046.1	2.72428e-60
MA0047.2	MA0047.2	7.17142e-4
MA0048.1	MA0048.1	0.995
MA0050.1	MA0050.1	0.967
MA0051.1	MA0051.1	0.968
MA0052.1	MA0052.1	0.0556
MA0055.1	MA0055.1	0.86
MA0057.1	MA0057.1	0.358
MA0058.1	MA0058.1	0.697
MA0059.1	MA0059.1	0.139
MA0060.1	MA0060.1	0.00762
MA0061.1	MA0061.1	0.813
MA0062.2	MA0062.2	0.00687
MA0065.2	MA0065.2	2.17177e-11
MA0066.1	MA0066.1	0.0499
MA0067.1	MA0067.1	0.00371
MA0068.1	MA0068.1	0.00945
MA0069.1	MA0069.1	0.0903
MA0070.1	MA0070.1	0.82
MA0071.1	MA0071.1	0.0777
MA0072.1	MA0072.1	0.0839
MA0073.1	MA0073.1	0.977
MA0074.1	MA0074.1	0.137
MA0076.1	MA0076.1	0.0536
MA0077.1	MA0077.1	0.301
MA0078.1	MA0078.1	0.852
MA0079.2	MA0079.2	0.274
MA0080.2	MA0080.2	5.43536e-8
MA0081.1	MA0081.1	0.0182
MA0083.1	MA0083.1	0.0118
MA0084.1	MA0084.1	0.669
MA0087.1	MA0087.1	0.821
MA0088.1	MA0088.1	0.469
MA0090.1	MA0090.1	0.645
MA0091.1	MA0091.1	0.563
MA0092.1	MA0092.1	0.356
MA0093.1	MA0093.1	0.745
MA0099.2	MA0099.2	3.08867e-7
MA0100.1	MA0100.1	0.44
MA0101.1	MA0101.1	0.0558
MA0102.2	MA0102.2	0.885
MA0103.1	MA0103.1	0.00836
MA0104.2	MA0104.2	0.593
MA0105.1	MA0105.1	0.0365
MA0106.1	MA0106.1	0.359
MA0107.1	MA0107.1	0.0417
MA0108.2	MA0108.2	0.00567
MA0111.1	MA0111.1	0.544
MA0112.2	MA0112.2	1.36333e-6
MA0113.1	MA0113.1	0.13
MA0114.1	MA0114.1	1.39163e-18
MA0115.1	MA0115.1	2.26243e-9
MA0116.1	MA0116.1	1.10544e-4
MA0117.1	MA0117.1	0.697
MA0119.1	MA0119.1	0.0552
MA0122.1	MA0122.1	0.639
MA0124.1	MA0124.1	0.881
MA0125.1	MA0125.1	0.728
MA0131.1	MA0131.1	0.63
MA0135.1	MA0135.1	0.949
MA0136.1	MA0136.1	3.68003e-7
MA0137.2	MA0137.2	0.213
MA0138.2	MA0138.2	0.0707
MA0139.1	MA0139.1	0.108
MA0140.1	MA0140.1	0.0778
MA0141.1	MA0141.1	1.12215e-4
MA0142.1	MA0142.1	0.0286
MA0143.1	MA0143.1	0.248
MA0144.1	MA0144.1	0.113
MA0145.1	MA0145.1	0.586
MA0146.1	MA0146.1	0.207
MA0147.1	MA0147.1	0.472
MA0148.1	MA0148.1	0.00253
MA0149.1	MA0149.1	0.194
MA0150.1	MA0150.1	0.311
MA0152.1	MA0152.1	2.62016e-4
MA0153.1	MA0153.1	1.3779e-35
MA0154.1	MA0154.1	0.0266
MA0155.1	MA0155.1	0.546
MA0156.1	MA0156.1	0.00129
MA0157.1	MA0157.1	0.249
MA0159.1	MA0159.1	9.97319e-5
MA0160.1	MA0160.1	0.00894
MA0162.1	MA0162.1	0.27
MA0163.1	MA0163.1	7.00813e-6
MA0164.1	MA0164.1	0.853
MA0258.1	MA0258.1	1.82311e-4
MA0259.1	MA0259.1	0.768

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12340

Novel motif	Logo	P-value
1	1	0.0235
10	10	0.119
100	100	0.176
101	101	0.853
102	102	0.209
103	103	0.0436
104	104	0.875
105	105	0.367
106	106	0.0422
107	107	0.0426
108	108	0.338
109	109	0.202
11	11	0.172
110	110	0.152
111	111	0.132
112	112	0.0219
113	113	0.266
114	114	0.0213
115	115	0.648
116	116	0.303
117	117	0.238
118	118	0.209
119	119	0.0195
12	12	0.463
120	120	0.998
121	121	0.342
122	122	0.579
123	123	0.755
124	124	0.0774
125	125	0.56
126	126	0.105
127	127	0.557
128	128	0.129
129	129	0.0954
13	13	0.0748
130	130	0.019
131	131	0.714
132	132	0.583
133	133	0.513
134	134	0.576
135	135	0.847
136	136	0.889
137	137	0.35
138	138	0.281
139	139	0.692
14	14	0.674
140	140	0.107
141	141	0.0332
142	142	0.278
143	143	0.037
144	144	0.793
145	145	0.351
146	146	0.123
147	147	0.897
148	148	0.0699
149	149	0.0678
15	15	0.125
150	150	0.628
151	151	0.272
152	152	0.643
153	153	0.701
154	154	0.594
155	155	0.0439
156	156	0.695
157	157	0.791
158	158	0.995
159	159	0.744
16	16	0.174
160	160	0.135
161	161	0.395
162	162	0.634
163	163	0.654
164	164	0.111
165	165	0.0023
166	166	0.878
167	167	0.0182
168	168	0.745
169	169	3.96185e-4
17	17	0.32
18	18	0.693
19	19	0.0514
2	2	0.684
20	20	0.735
21	21	0.596
22	22	0.212
23	23	0.26
24	24	0.881
25	25	0.977
26	26	0.0352
27	27	0.434
28	28	0.75
29	29	0.176
3	3	0.168
30	30	0.875
31	31	0.387
32	32	0.463
33	33	0.4
34	34	0.91
35	35	0.0815
36	36	0.0761
37	37	0.249
38	38	0.315
39	39	0.386
4	4	0.497
40	40	0.0861
41	41	0.398
42	42	0.374
43	43	0.161
44	44	0.00219
45	45	0.591
46	46	0.106
47	47	0.218
48	48	0.239
49	49	0.161
5	5	0.293
50	50	0.698
51	51	0.733
52	52	0.19
53	53	0.956
54	54	0.556
55	55	0.245
56	56	0.358
57	57	0.484
58	58	0.35
59	59	0.17
6	6	0.703
60	60	0.0619
61	61	0.617
62	62	0.198
63	63	0.129
64	64	0.317
65	65	0.178
66	66	0.283
67	67	0.0925
68	68	0.717
69	69	0.872
7	7	0.111
70	70	0.0808
71	71	0.0501
72	72	0.495
73	73	0.417
74	74	0.692
75	75	0.131
76	76	0.984
77	77	0.067
78	78	0.0472
79	79	0.629
8	8	0.0374
80	80	0.562
81	81	0.298
82	82	0.188
83	83	0.435
84	84	0.397
85	85	0.0359
86	86	0.41
87	87	0.863
88	88	0.424
89	89	0.0665
9	9	0.873
90	90	0.129
91	91	0.101
92	92	0.185
93	93	0.427
94	94	0.894
95	95	0.813
96	96	0.171
97	97	0.341
98	98	0.258
99	99	0.124

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12340

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000078 human hepatocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000078 (human hepatocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008199
+|DRA_sample_Accession=CAGE@SAMD00005826
-|accession_numbers=CAGE;DRX008307;DRR009179;DRZ000604;DRZ001989
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005826
+|accession_numbers=CAGE;DRX008307;DRR009179;DRZ000604;DRZ001989;DRZ011954;DRZ013339
+|accession_numbers_RNASeq=sRNA-Seq;DRX037266;DRR041632;DRZ007274
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000182;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
 |ffid_belonging_in_development=CL:0000134,CL:0000223
 |fonse_cell_line=
@@ Line 40: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11523-119I2
 |is_a=EFO:0002091;;FF:0000078
 |is_obsolete=
 |library_id=CNhs12340
+|library_id_phase_based=2:CNhs12340
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11523
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.AGTCAA.11523
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11523
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.AGTCAA.11523
 |name=Hepatocyte, donor1
 |namespace=FANTOM5
@@ Line 49: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12340,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 65: / Line 82: @@
 |rna_tube_id=119I2
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10066.AGTCAA
 |sample_age=
 |sample_category=primary cells
@@ Line 88: / Line 106: @@
 |top_motifs=HNF4A_NR2F1,2:8.12072270132;HNF1A:7.49141154743;FOXA2:6.65191124675;NR6A1:5.70561253248;RXR{A,B,G}_{NR1H2,PPAR}dimers:5.19476596438;AR:3.20481073147;FOX{F1,F2,J1}:2.96430279982;EVI1:2.86839236306;STAT2,4,6:2.8438520855;CUX2:2.81594298239;BPTF:2.4403694026;FOXD3:2.34736039494;ALX4:2.25161724029;NR1H4:2.2181446487;ARID5B:1.94108585384;POU6F1:1.91635098128;ADNP_IRX_SIX_ZHX:1.8788126578;NKX2-1,4:1.86335404525;DBP:1.70138799043;FOX{D1,D2}:1.63719891384;ONECUT1,2:1.6273328578;PAX1,9:1.60739106029;NFE2L1:1.58543833265;T:1.57228999716;MTF1:1.47197001921;GLI1..3:1.4581282146;NFIL3:1.34717453417;HOX{A4,D4}:1.34646497847;PAX4:1.33355316235;FOXM1:1.31885434621;MYOD1:1.26065914093;FOXP3:1.2602142333;ZBTB16:1.17745538921;RXRA_VDR{dimer}:1.11472283783;GATA6:1.09949309862;HLF:1.08562170218;RBPJ:1.02140407995;PPARG:0.978409557981;SNAI1..3:0.93501986754;PDX1:0.911002854432;TLX2:0.907654085367;CEBPA,B_DDIT3:0.901257497817;FOXQ1:0.872703887618;FOX{I1,J2}:0.86233519081;TAL1_TCF{3,4,12}:0.846685921903;FOXL1:0.758444866099;HOXA9_MEIS1:0.729533569091;bHLH_family:0.662518827137;ZEB1:0.654767954875;PBX1:0.645705867661;IRF7:0.628588818926;PAX3,7:0.608843625731;RXR{A,B,G}:0.558230428494;EN1,2:0.501332362582;HMGA1,2:0.482529073699;ATF6:0.451874557815;LMO2:0.440252297227;UFEwm:0.394030643906;YY1:0.390955493033;NKX3-2:0.382319360579;NR5A1,2:0.362775730058;PAX6:0.360885467685;FOXP1:0.27395058206;TBP:0.214362750756;AIRE:0.209114484077;EP300:0.186105111343;STAT1,3:0.181030199884;TEF:0.139064771299;HIF1A:0.0682531974781;HOX{A5,B5}:0.053371298188;TFCP2:0.0433540547179;CRX:0.0285428819149;TGIF1:0.00469485899234;GFI1:-0.0404189135356;GCM1,2:-0.0457396906444;CDX1,2,4:-0.0720363821232;NHLH1,2:-0.0942601656517;ALX1:-0.101081608799;NFIX:-0.115185032388;MYFfamily:-0.120955938121;HIC1:-0.127617229285;ZNF423:-0.182655379046;IKZF2:-0.188057746299;PAX2:-0.200757149167;VSX1,2:-0.201605380576;TLX1..3_NFIC{dimer}:-0.21582310323;SMAD1..7,9:-0.266525678239;SREBF1,2:-0.269497902651;DMAP1_NCOR{1,2}_SMARC:-0.275578949225;MED-1{core}:-0.27854064602;IRF1,2:-0.345725374079;RORA:-0.345821936028;KLF4:-0.348944036037;ATF5_CREB3:-0.382825610489;NKX2-2,8:-0.385768100034;MAFB:-0.40719899319;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.443134750186;HAND1,2:-0.451130184618;MTE{core}:-0.490941131283;NFY{A,B,C}:-0.506032611087;FOXN1:-0.519385082965;STAT5{A,B}:-0.519631523398;NFKB1_REL_RELA:-0.520139218415;REST:-0.590089418315;OCT4_SOX2{dimer}:-0.60581225104;ZNF143:-0.607961169918;TOPORS:-0.614540316953;ELF1,2,4:-0.619474702967;NFE2:-0.642303302952;PAX5:-0.686671205154;NR3C1:-0.690484303156;SP1:-0.691313567047;GZF1:-0.712143394288;MYBL2:-0.715904107543;IKZF1:-0.740868068346;SOX{8,9,10}:-0.749441421121;SOX5:-0.773812993931;SPI1:-0.788978520345;MEF2{A,B,C,D}:-0.803647957541;SOX17:-0.809475266558;LHX3,4:-0.811849467105;FOXO1,3,4:-0.814574815084;EBF1:-0.859888244805;BREu{core}:-0.863060273586;PITX1..3:-0.899261509122;TP53:-0.900976702992;RUNX1..3:-0.907113345515;ZFP161:-0.920011973614;EGR1..3:-0.921974392031;TBX4,5:-0.923719553004;SPIB:-0.944923545896;HES1:-0.946367130835;ELK1,4_GABP{A,B1}:-0.948419516336;MAZ:-0.981453046392;POU1F1:-0.993762036601;BACH2:-1.01883114491;NRF1:-1.03468832774;ZNF238:-1.05414285271;FOS_FOS{B,L1}_JUN{B,D}:-1.05604840296;ETS1,2:-1.06392579139;GTF2I:-1.0697025173;TFAP4:-1.07320772182;FOSL2:-1.07856297346;CREB1:-1.1108648681;NFATC1..3:-1.1150402525;RFX2..5_RFXANK_RFXAP:-1.12758334537;LEF1_TCF7_TCF7L1,2:-1.16732342251;POU3F1..4:-1.17628539885;ESR1:-1.18572693465;HOX{A6,A7,B6,B7}:-1.19014165194;E2F1..5:-1.19225520695;TEAD1:-1.19811352603;GATA4:-1.21394199555;PATZ1:-1.22000819585;TFAP2{A,C}:-1.23517847606;NFE2L2:-1.24176547981;GFI1B:-1.26421177023;HMX1:-1.27619367876;POU2F1..3:-1.29429005877;HSF1,2:-1.30623816474;NKX2-3_NKX2-5:-1.31232843602;HBP1_HMGB_SSRP1_UBTF:-1.3264808975;RFX1:-1.3322820716;RREB1:-1.33731585789;ESRRA:-1.3547221655;ATF4:-1.37665944789;ZIC1..3:-1.38715165179;TFAP2B:-1.41832968832;AHR_ARNT_ARNT2:-1.41905301524;ZBTB6:-1.44115275753;PRRX1,2:-1.57333899237;GTF2A1,2:-1.6252754814;SRF:-1.64337162861;MYB:-1.64670064897;JUN:-1.70884943071;SPZ1:-1.72432518345;PRDM1:-1.77967960846;NANOG{mouse}:-1.83539012139;NKX3-1:-1.86873010188;MZF1:-1.91007522003;NKX6-1,2:-1.99863511123;ATF2:-2.061727521;ZNF148:-2.124956038;ZNF384:-2.24069569309;SOX2:-2.26257551096;POU5F1:-2.27341965474;NANOG:-2.36753927731;CDC5L:-2.38536464987;PAX8:-2.41746000554;XBP1:-2.4307148547;XCPE1{core}:-2.47552143979;TFDP1:-2.54602133789
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11523-119I2;search_select_hide=table117:FF:11523-119I2
 }}

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FF:11523-119I2: Difference between revisions

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