FF:11515-119H3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005391 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005391 | ||
|accession_numbers=CAGE;DRX008437;DRR009309;DRZ000734;DRZ002119;DRZ012084;DRZ013469 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037239;DRR041605;DRZ007247 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000155 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.07!117.24!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.93!84.87!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.89!76.46!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.88!75.44!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.61!44.09!IRF6;;chr6:50786591..50786614,+!p1@TFAP2B!1.55!34.66!TFAP2B;;chr17:46622205..46622218,-!p3@HOXB2!1.50!34.92!HOXB2;;chr17:46703687..46703740,-!p1@HOXB9!1.50!30.33!HOXB9;;chr6:34204921..34204939,+!p3@HMGA1!1.41!708.05!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!1.40!23.96!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.38!23.19!TFCP2L1;;chr17:46675558..46675577,-!p2@HOXB6!1.38!22.94!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.37!22.68!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.32!19.88!POU3F3;;chr21:38071430..38071456,+!p1@SIM2!1.29!18.35!SIM2;;chr6:10415276..10415341,-!p2@TFAP2A!1.27!21.66!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!1.26!17.08!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.22!15.55!ZBED2;;chr17:46622440..46622477,-!p5@HOXB2!1.18!15.80!HOXB2;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.76!IRX2;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.76!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!1.16!13.51!HOXA9;;chr2:177053386..177053402,+!p1@HOXD1!1.14!12.74!HOXD1;;chr6:34204672..34204692,+!p1@HMGA1!1.06!1171.16!HMGA1;;chr2:46524897..46524911,+!p2@EPAS1!1.02!27.02!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!1.02!13.25!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!1.01!9.18!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.99!146.04!MYBL2;;chr17:46622229..46622257,-!p6@HOXB2!0.98!10.20!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.35!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.96!8.16!HOXB3;;chr1:24645832..24645853,+!p1@GRHL3!0.96!8.16!GRHL3;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.90!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.94!11.21!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.92!HOXB6;;chr17:7493405..7493419,-!p1@SOX15!0.94!7.65!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!0.94!7.65!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.11!DRAP1;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.41!BNC1;;chr10:8096631..8096660,+!p1@GATA3!0.91!8.67!GATA3;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.72!FOXQ1;;chr20:42295713..42295738,+!p2@MYBL2!0.89!42.05!MYBL2;;chr11:65667846..65667868,-!p1@FOSL1!0.87!180.96!FOSL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.87!6.37!POU3F3;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.78!ETV4;;chr17:46703826..46703845,-!p3@HOXB9!0.85!6.12!HOXB9;;chr7:27219849..27219867,-!p6@HOXA10!0.85!6.12!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.86!HOXA11;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.86!HOXC10;;chr17:46703528..46703549,-!p5@HOXB9!0.84!5.86!HOXB9;;chr17:46675539..46675551,-!p7@HOXB6!0.82!5.61!HOXB6;;chr6:50789717..50789729,+!p4@TFAP2B!0.82!5.61!TFAP2B;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.61!HOXC9;;chr11:65686802..65686818,+!p6@DRAP1!0.81!9.94!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!0.80!5.35!EMX2;;chr1:209979411..209979433,-!p2@IRF6!0.80!5.35!IRF6;;chr7:27192185..27192209,-!p1@HOXA3!0.80!5.35!HOXA3;;chr7:27196217..27196246,-!p2@HOXA7!0.80!5.35!HOXA7;;chr20:31350184..31350200,+!p1@DNMT3B!0.79!11.47!DNMT3B;;chr10:102505493..102505546,+!p2@PAX2!0.79!5.10!PAX2;;chr17:36105074..36105086,-!p2@HNF1B!0.79!5.10!HNF1B;;chr12:66218255..66218304,+!p3@HMGA2!0.78!14.53!HMGA2;;chr12:3069037..3069119,+!p2@TEAD4!0.77!18.35!TEAD4;;chr3:69915385..69915438,+!p3@MITF!0.77!4.84!MITF;;chr7:27224842..27224872,-!p1@HOXA11!0.77!4.84!HOXA11;;chr7:28448965..28448994,+!p2@CREB5!0.76!18.35!CREB5;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.27!SOX9;;chr11:61520075..61520136,+!p1@C11orf9!0.75!10.45!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.75!4.59!HOXC5;;chr17:46675619..46675642,-!p5@HOXB6!0.75!4.59!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.75!4.59!HOXB8;;chr1:6479968..6479986,-!p1@HES2!0.75!4.59!HES2;;chr3:69811858..69811881,+!p5@MITF!0.75!4.59!MITF;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.41!EPAS1;;chr2:177016336..177016350,+!p1@HOXD4!0.73!4.33!HOXD4;;chr3:69811882..69811898,+!p6@MITF!0.73!4.33!MITF;;chr17:46675586..46675600,-!p6@HOXB6!0.73!4.33!HOXB6;;chr13:73633131..73633149,+!p1@KLF5!0.72!51.23!KLF5;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.08!FOSL1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.71!4.08!LHX1;;chr17:45928443..45928473,-!p2@SP6!0.71!4.08!SP6;;chr17:46622175..46622186,-!p12@HOXB2!0.71!4.08!HOXB2;;chr17:46692457..46692484,-!p2@HOXB8!0.71!4.08!HOXB8;;chr7:27219833..27219845,-!p7@HOXA10!0.71!4.08!HOXA10;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.61!HOXB2;;chr6:31126291..31126399,+!p1@TCF19!0.69!41.80!TCF19;;chr17:46655704..46655718,-!p2@HOXB4!0.69!6.12!HOXB4;;chr12:66218003..66218018,+!p9@HMGA2!0.69!4.84!HMGA2;;chr7:26191809..26191890,+!p1@NFE2L3!0.67!20.90!NFE2L3;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.12!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.67!6.63!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.66!3.57!GATA3;;chr16:51185318..51185348,-!p2@SALL1!0.66!3.57!SALL1;;chr17:46667628..46667642,-!p2@HOXB3!0.66!3.57!HOXB3;;chr21:38071403..38071428,+!p2@SIM2!0.66!3.57!SIM2;;chr6:21593973..21593988,+!p1@SOX4!0.64!142.48!SOX4;;chr6:21597765..21597779,+!p2@SOX4!0.63!31.35!SOX4;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.88!PHB2;;chr7:27169801..27169844,-!p2@HOXA4!0.63!3.31!HOXA4;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.31!BHLHA15;;chr8:102504651..102504683,+!p1@GRHL2!0.63!3.31!GRHL2;;chr2:176987441..176987454,+!p1@HOXD9!0.63!3.31!HOXD9;;chr2:96012397..96012417,+!p3@KCNIP3!0.63!3.31!KCNIP3;;chr3:111314230..111314241,-!p2@ZBED2!0.63!3.31!ZBED2;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.35!ZNF702P;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.35!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.10!HOXB2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.84!HMGA2;;chr11:65554528..65554546,+!p1@OVOL1!0.61!3.06!OVOL1;;chr16:51185172..51185197,-!p1@SALL1!0.61!3.06!SALL1;;chr17:46675469..46675481,-!p4@HOXB6!0.61!3.06!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.06!HOXB7;;chr17:46692318..46692362,-!p5@HOXB8!0.61!3.06!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.61!3.06!HOXB9;;chr2:176972000..176972025,+!p4@HOXD11!0.61!3.06!HOXD11;;chr2:96012353..96012378,+!p4@KCNIP3!0.61!3.06!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.61!3.06!ZNF732;;chr6:1612300..1612324,+!p3@FOXC1!0.61!3.06!FOXC1;;chr7:27196267..27196311,-!p1@HOXA7!0.61!3.06!HOXA7;;chr1:24646002..24646013,+!p3@GRHL3!0.61!3.06!GRHL3;;chr10:104155480..104155534,+!p2@NFKB2!0.60!23.19!NFKB2;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.84!ETV4;;chr12:66218836..66218888,+!p1@HMGA2!0.59!32.62!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.59!4.59!NFATC2;;chr11:65686776..65686787,+!p9@DRAP1!0.59!3.57!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.58!13.00!FOSL1;;chr10:119302232..119302265,+!p1@EMX2!0.58!2.80!EMX2;;chr12:54378923..54378966,+!p1@HOXC10!0.58!2.80!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.58!2.80!HOXC9;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.58!2.80!POU3F3;;chr3:141043050..141043063,+!p22@ZBTB38!0.58!2.80!ZBTB38;;chr5:3595977..3595999,+!p1@IRX1!0.58!2.80!IRX1;;chr6:34210478..34210481,+!p8@HMGA1!0.58!2.80!HMGA1;;chr7:27190547..27190591,-!p1@HOXA6!0.58!2.80!HOXA6;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.80!HOXA10;;chr15:67357924..67357952,+!p2@SMAD3!0.57!21.92!SMAD3;;chr1:8938736..8938756,-!p1@ENO1!0.56!3624.34!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.56!225.31!ENO1;;chr18:3450161..3450183,+!p1@TGIF1!0.56!111.38!TGIF1;;chr12:2986275..2986363,-!p1@FOXM1!0.56!32.62!FOXM1;;chr15:96869255..96869291,+!p6@NR2F2!0.56!5.35!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.56!4.59!ZFP64;;chr22:21355896..21355920,-!p4@THAP7!0.56!3.06!THAP7;;chr10:104154246..104154347,+!p3@NFKB2!0.55!19.12!NFKB2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.16!HOXB2;;chr11:64764435..64764449,-!p1@BATF2!0.55!3.82!BATF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.31!HOXC4;;chr12:54402745..54402788,+!p1@HOXC8!0.55!2.55!HOXC8;;chr16:51185573..51185593,-!p3@SALL1!0.55!2.55!SALL1;;chr17:46691732..46691766,-!p4@HOXB8!0.55!2.55!HOXB8;;chr17:46692603..46692621,-!p6@HOXB8!0.55!2.55!HOXB8;;chr5:3595934..3595957,+!p2@IRX1!0.55!2.55!IRX1;;chr3:141043020..141043049,+!p17@ZBTB38!0.55!2.55!ZBTB38;;chr1:8938709..8938720,-!p3@ENO1!0.54!152.16!ENO1;;chr17:7492684..7492778,-!p2@SOX15!0.53!5.86!SOX15;;chr15:96869114..96869160,+!p11@NR2F2!0.53!3.57!NR2F2;;chr6:44233252..44233296,-!p1@NFKBIE!0.52!29.06!NFKBIE;;chr22:42229210..42229229,+!p3@SREBF2!0.52!6.37!SREBF2;;chr6:1610293..1610310,+!p1@FOXC1!0.52!4.33!FOXC1;;chr17:53342311..53342400,+!p1@HLF!0.52!2.80!HLF;;chr16:52581025..52581072,-!p1@TOX3!0.52!2.29!TOX3;;chr17:46621146..46621180,-!p10@HOXB2!0.52!2.29!HOXB2;;chr6:100912785..100912822,-!p1@SIM1!0.52!2.29!SIM1;;chr6:134210243..134210257,+!p1@TCF21!0.52!2.29!TCF21;;chr9:100615499..100615519,+!p1@FOXE1!0.52!2.29!FOXE1;;chr10:119302645..119302712,+!p3@EMX2!0.52!2.29!EMX2;;chr11:65554563..65554576,+!p2@OVOL1!0.52!2.29!OVOL1;;chr1:10856694..10856715,-!p3@CASZ1!0.52!2.29!CASZ1;;chr2:176987463..176987479,+!p2@HOXD9!0.52!2.29!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.52!2.29!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.52!2.29!HOXD3;;chr2:95963052..95963106,+!p1@KCNIP3!0.52!2.29!KCNIP3;;chr9:117160738..117160782,-!p2@AKNA!0.51!11.47!AKNA;;chr3:12329358..12329393,+!p3@PPARG!0.51!6.63!PPARG;;chr3:24536253..24536328,-!p1@THRB!0.51!4.84!THRB;;chr17:41622765..41622821,-!p2@ETV4!0.51!3.82!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.51!2.80!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.50!24.98!PPP1R13L;;chr17:47492252..47492265,-!p2@PHB!0.50!11.21!PHB;;chr19:20188776..20188826,+!p1@ZNF90!0.50!7.14!ZNF90;;chr16:8962544..8962584,-!p2@CARHSP1!0.50!5.86!CARHSP1;;chr16:54320675..54320715,-!p1@IRX3!0.50!5.61!IRX3;;chr6:10412392..10412409,-!p4@TFAP2A!0.50!2.55!TFAP2A;;chr6:34204973..34204990,+!p4@HMGA1!0.49!37.47!HMGA1;;chr22:42229246..42229270,+!p2@SREBF2!0.49!34.92!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.49!9.69!HES6;;chr1:89264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| |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.07!117.24!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.93!84.87!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.89!76.46!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.88!75.44!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.61!44.09!IRF6;;chr6:50786591..50786614,+!p1@TFAP2B!1.55!34.66!TFAP2B;;chr17:46622205..46622218,-!p3@HOXB2!1.50!34.92!HOXB2;;chr17:46703687..46703740,-!p1@HOXB9!1.50!30.33!HOXB9;;chr6:34204921..34204939,+!p3@HMGA1!1.41!708.05!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!1.40!23.96!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.38!23.19!TFCP2L1;;chr17:46675558..46675577,-!p2@HOXB6!1.38!22.94!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.37!22.68!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.32!19.88!POU3F3;;chr21:38071430..38071456,+!p1@SIM2!1.29!18.35!SIM2;;chr6:10415276..10415341,-!p2@TFAP2A!1.27!21.66!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!1.26!17.08!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.22!15.55!ZBED2;;chr17:46622440..46622477,-!p5@HOXB2!1.18!15.80!HOXB2;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.76!IRX2;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.76!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!1.16!13.51!HOXA9;;chr2:177053386..177053402,+!p1@HOXD1!1.14!12.74!HOXD1;;chr6:34204672..34204692,+!p1@HMGA1!1.06!1171.16!HMGA1;;chr2:46524897..46524911,+!p2@EPAS1!1.02!27.02!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!1.02!13.25!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!1.01!9.18!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.99!146.04!MYBL2;;chr17:46622229..46622257,-!p6@HOXB2!0.98!10.20!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.35!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.96!8.16!HOXB3;;chr1:24645832..24645853,+!p1@GRHL3!0.96!8.16!GRHL3;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.90!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.94!11.21!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.92!HOXB6;;chr17:7493405..7493419,-!p1@SOX15!0.94!7.65!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!0.94!7.65!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.11!DRAP1;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.41!BNC1;;chr10:8096631..8096660,+!p1@GATA3!0.91!8.67!GATA3;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.72!FOXQ1;;chr20:42295713..42295738,+!p2@MYBL2!0.89!42.05!MYBL2;;chr11:65667846..65667868,-!p1@FOSL1!0.87!180.96!FOSL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.87!6.37!POU3F3;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.78!ETV4;;chr17:46703826..46703845,-!p3@HOXB9!0.85!6.12!HOXB9;;chr7:27219849..27219867,-!p6@HOXA10!0.85!6.12!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.86!HOXA11;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.86!HOXC10;;chr17:46703528..46703549,-!p5@HOXB9!0.84!5.86!HOXB9;;chr17:46675539..46675551,-!p7@HOXB6!0.82!5.61!HOXB6;;chr6:50789717..50789729,+!p4@TFAP2B!0.82!5.61!TFAP2B;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.61!HOXC9;;chr11:65686802..65686818,+!p6@DRAP1!0.81!9.94!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!0.80!5.35!EMX2;;chr1:209979411..209979433,-!p2@IRF6!0.80!5.35!IRF6;;chr7:27192185..27192209,-!p1@HOXA3!0.80!5.35!HOXA3;;chr7:27196217..27196246,-!p2@HOXA7!0.80!5.35!HOXA7;;chr20:31350184..31350200,+!p1@DNMT3B!0.79!11.47!DNMT3B;;chr10:102505493..102505546,+!p2@PAX2!0.79!5.10!PAX2;;chr17:36105074..36105086,-!p2@HNF1B!0.79!5.10!HNF1B;;chr12:66218255..66218304,+!p3@HMGA2!0.78!14.53!HMGA2;;chr12:3069037..3069119,+!p2@TEAD4!0.77!18.35!TEAD4;;chr3:69915385..69915438,+!p3@MITF!0.77!4.84!MITF;;chr7:27224842..27224872,-!p1@HOXA11!0.77!4.84!HOXA11;;chr7:28448965..28448994,+!p2@CREB5!0.76!18.35!CREB5;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.27!SOX9;;chr11:61520075..61520136,+!p1@C11orf9!0.75!10.45!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.75!4.59!HOXC5;;chr17:46675619..46675642,-!p5@HOXB6!0.75!4.59!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.75!4.59!HOXB8;;chr1:6479968..6479986,-!p1@HES2!0.75!4.59!HES2;;chr3:69811858..69811881,+!p5@MITF!0.75!4.59!MITF;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.41!EPAS1;;chr2:177016336..177016350,+!p1@HOXD4!0.73!4.33!HOXD4;;chr3:69811882..69811898,+!p6@MITF!0.73!4.33!MITF;;chr17:46675586..46675600,-!p6@HOXB6!0.73!4.33!HOXB6;;chr13:73633131..73633149,+!p1@KLF5!0.72!51.23!KLF5;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.08!FOSL1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.71!4.08!LHX1;;chr17:45928443..45928473,-!p2@SP6!0.71!4.08!SP6;;chr17:46622175..46622186,-!p12@HOXB2!0.71!4.08!HOXB2;;chr17:46692457..46692484,-!p2@HOXB8!0.71!4.08!HOXB8;;chr7:27219833..27219845,-!p7@HOXA10!0.71!4.08!HOXA10;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.61!HOXB2;;chr6:31126291..31126399,+!p1@TCF19!0.69!41.80!TCF19;;chr17:46655704..46655718,-!p2@HOXB4!0.69!6.12!HOXB4;;chr12:66218003..66218018,+!p9@HMGA2!0.69!4.84!HMGA2;;chr7:26191809..26191890,+!p1@NFE2L3!0.67!20.90!NFE2L3;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.12!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.67!6.63!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.66!3.57!GATA3;;chr16:51185318..51185348,-!p2@SALL1!0.66!3.57!SALL1;;chr17:46667628..46667642,-!p2@HOXB3!0.66!3.57!HOXB3;;chr21:38071403..38071428,+!p2@SIM2!0.66!3.57!SIM2;;chr6:21593973..21593988,+!p1@SOX4!0.64!142.48!SOX4;;chr6:21597765..21597779,+!p2@SOX4!0.63!31.35!SOX4;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.88!PHB2;;chr7:27169801..27169844,-!p2@HOXA4!0.63!3.31!HOXA4;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.31!BHLHA15;;chr8:102504651..102504683,+!p1@GRHL2!0.63!3.31!GRHL2;;chr2:176987441..176987454,+!p1@HOXD9!0.63!3.31!HOXD9;;chr2:96012397..96012417,+!p3@KCNIP3!0.63!3.31!KCNIP3;;chr3:111314230..111314241,-!p2@ZBED2!0.63!3.31!ZBED2;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.35!ZNF702P;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.35!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.10!HOXB2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.84!HMGA2;;chr11:65554528..65554546,+!p1@OVOL1!0.61!3.06!OVOL1;;chr16:51185172..51185197,-!p1@SALL1!0.61!3.06!SALL1;;chr17:46675469..46675481,-!p4@HOXB6!0.61!3.06!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.06!HOXB7;;chr17:46692318..46692362,-!p5@HOXB8!0.61!3.06!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.61!3.06!HOXB9;;chr2:176972000..176972025,+!p4@HOXD11!0.61!3.06!HOXD11;;chr2:96012353..96012378,+!p4@KCNIP3!0.61!3.06!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.61!3.06!ZNF732;;chr6:1612300..1612324,+!p3@FOXC1!0.61!3.06!FOXC1;;chr7:27196267..27196311,-!p1@HOXA7!0.61!3.06!HOXA7;;chr1:24646002..24646013,+!p3@GRHL3!0.61!3.06!GRHL3;;chr10:104155480..104155534,+!p2@NFKB2!0.60!23.19!NFKB2;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.84!ETV4;;chr12:66218836..66218888,+!p1@HMGA2!0.59!32.62!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.59!4.59!NFATC2;;chr11:65686776..65686787,+!p9@DRAP1!0.59!3.57!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.58!13.00!FOSL1;;chr10:119302232..119302265,+!p1@EMX2!0.58!2.80!EMX2;;chr12:54378923..54378966,+!p1@HOXC10!0.58!2.80!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.58!2.80!HOXC9;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.58!2.80!POU3F3;;chr3:141043050..141043063,+!p22@ZBTB38!0.58!2.80!ZBTB38;;chr5:3595977..3595999,+!p1@IRX1!0.58!2.80!IRX1;;chr6:34210478..34210481,+!p8@HMGA1!0.58!2.80!HMGA1;;chr7:27190547..27190591,-!p1@HOXA6!0.58!2.80!HOXA6;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.80!HOXA10;;chr15:67357924..67357952,+!p2@SMAD3!0.57!21.92!SMAD3;;chr1:8938736..8938756,-!p1@ENO1!0.56!3624.34!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.56!225.31!ENO1;;chr18:3450161..3450183,+!p1@TGIF1!0.56!111.38!TGIF1;;chr12:2986275..2986363,-!p1@FOXM1!0.56!32.62!FOXM1;;chr15:96869255..96869291,+!p6@NR2F2!0.56!5.35!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.56!4.59!ZFP64;;chr22:21355896..21355920,-!p4@THAP7!0.56!3.06!THAP7;;chr10:104154246..104154347,+!p3@NFKB2!0.55!19.12!NFKB2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.16!HOXB2;;chr11:64764435..64764449,-!p1@BATF2!0.55!3.82!BATF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.31!HOXC4;;chr12:54402745..54402788,+!p1@HOXC8!0.55!2.55!HOXC8;;chr16:51185573..51185593,-!p3@SALL1!0.55!2.55!SALL1;;chr17:46691732..46691766,-!p4@HOXB8!0.55!2.55!HOXB8;;chr17:46692603..46692621,-!p6@HOXB8!0.55!2.55!HOXB8;;chr5:3595934..3595957,+!p2@IRX1!0.55!2.55!IRX1;;chr3:141043020..141043049,+!p17@ZBTB38!0.55!2.55!ZBTB38;;chr1:8938709..8938720,-!p3@ENO1!0.54!152.16!ENO1;;chr17:7492684..7492778,-!p2@SOX15!0.53!5.86!SOX15;;chr15:96869114..96869160,+!p11@NR2F2!0.53!3.57!NR2F2;;chr6:44233252..44233296,-!p1@NFKBIE!0.52!29.06!NFKBIE;;chr22:42229210..42229229,+!p3@SREBF2!0.52!6.37!SREBF2;;chr6:1610293..1610310,+!p1@FOXC1!0.52!4.33!FOXC1;;chr17:53342311..53342400,+!p1@HLF!0.52!2.80!HLF;;chr16:52581025..52581072,-!p1@TOX3!0.52!2.29!TOX3;;chr17:46621146..46621180,-!p10@HOXB2!0.52!2.29!HOXB2;;chr6:100912785..100912822,-!p1@SIM1!0.52!2.29!SIM1;;chr6:134210243..134210257,+!p1@TCF21!0.52!2.29!TCF21;;chr9:100615499..100615519,+!p1@FOXE1!0.52!2.29!FOXE1;;chr10:119302645..119302712,+!p3@EMX2!0.52!2.29!EMX2;;chr11:65554563..65554576,+!p2@OVOL1!0.52!2.29!OVOL1;;chr1:10856694..10856715,-!p3@CASZ1!0.52!2.29!CASZ1;;chr2:176987463..176987479,+!p2@HOXD9!0.52!2.29!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.52!2.29!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.52!2.29!HOXD3;;chr2:95963052..95963106,+!p1@KCNIP3!0.52!2.29!KCNIP3;;chr9:117160738..117160782,-!p2@AKNA!0.51!11.47!AKNA;;chr3:12329358..12329393,+!p3@PPARG!0.51!6.63!PPARG;;chr3:24536253..24536328,-!p1@THRB!0.51!4.84!THRB;;chr17:41622765..41622821,-!p2@ETV4!0.51!3.82!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.51!2.80!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.50!24.98!PPP1R13L;;chr17:47492252..47492265,-!p2@PHB!0.50!11.21!PHB;;chr19:20188776..20188826,+!p1@ZNF90!0.50!7.14!ZNF90;;chr16:8962544..8962584,-!p2@CARHSP1!0.50!5.86!CARHSP1;;chr16:54320675..54320715,-!p1@IRX3!0.50!5.61!IRX3;;chr6:10412392..10412409,-!p4@TFAP2A!0.50!2.55!TFAP2A;;chr6:34204973..34204990,+!p4@HMGA1!0.49!37.47!HMGA1;;chr22:42229246..42229270,+!p2@SREBF2!0.49!34.92!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.49!9.69!HES6;;chr1:89264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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|ffid_belonging_in_development=CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11515-119H3 | |id=FF:11515-119H3 | ||
|is_a=EFO:0002091;;FF:0000155 | |is_a=EFO:0002091;;FF:0000155 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11330 | |||
|library_id_phase_based=2:CNhs11330 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11515 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CCGTCC.11515 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11515 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CCGTCC.11515 | |||
|name=Renal Proximal Tubular Epithelial Cell, donor1 | |name=Renal Proximal Tubular Epithelial Cell, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11330,LSID768,release014,COMPLETED | |profile_hcage=CNhs11330,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.089452885343833,0,0,0,0,0.0863353375670778,0.178905770687666,-0.0959275275184245,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0547221025255669,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.105174491695582,0,0,0,0,0,0,0,0,0.198130038958915,0,0,0,0,0,0.0052870611787676,0.0986009078228607,0.00160854658025561,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986009078228607,0,0,0,-0.0240167490785739,0,0,0,0,0,0,0,0,0,0,0.0395413152553816,-0.087870718869137,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0562488823677925,0,0,0,-0.0596045631535823,-0.0318201072352323,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC4105 | |rna_catalog_number=SC4105 | ||
| Line 58: | Line 82: | ||
|rna_tube_id=119H3 | |rna_tube_id=119H3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.CCGTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=ZEB1:1.89887899719;SNAI1..3:1.83032620745;MYOD1:1.71795880399;XCPE1{core}:1.71278791212;HNF1A:1.59039326191;ADNP_IRX_SIX_ZHX:1.58852351326;NKX2-3_NKX2-5:1.43597415401;LMO2:1.27577304918;ZNF148:1.15644575169;PBX1:1.14123927821;RXRA_VDR{dimer}:1.09607091065;SP1:1.02152117089;LHX3,4:0.974205926821;ESRRA:0.9668192794;bHLH_family:0.960848819856;PPARG:0.885595426349;TEAD1:0.818914016704;HOX{A5,B5}:0.781617279313;NFY{A,B,C}:0.742532346504;EBF1:0.739679632409;TBX4,5:0.724715600346;TEF:0.722961479197;TFCP2:0.713464077007;GFI1:0.709810639561;POU2F1..3:0.702497728637;HAND1,2:0.698751923888;VSX1,2:0.652771342414;TFDP1:0.560787341176;ZNF423:0.552453803101;FOXQ1:0.533255007711;GLI1..3:0.494567071336;E2F1..5:0.478268649506;ONECUT1,2:0.475538194127;LEF1_TCF7_TCF7L1,2:0.462911082332;GZF1:0.427753737334;ZIC1..3:0.417413856432;POU1F1:0.413118551519;PAX5:0.405360942266;NR5A1,2:0.398327234673;CDC5L:0.391342179536;TFAP2{A,C}:0.379401994126;NR3C1:0.378384368895;FOSL2:0.372594090215;NR6A1:0.354774094298;TBP:0.352569946072;SPZ1:0.324649840338;PRRX1,2:0.323631659403;FOS_FOS{B,L1}_JUN{B,D}:0.295017661844;TP53:0.287637846018;HIC1:0.283079074201;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.252888286012;GTF2A1,2:0.22340210708;CRX:0.205864208973;POU5F1:0.200665481381;TLX1..3_NFIC{dimer}:0.199602440659;HOX{A6,A7,B6,B7}:0.184228697983;BACH2:0.174937131163;NFE2:0.139231783849;STAT5{A,B}:0.136819917721;TFAP2B:0.130329211307;MTF1:0.119946771237;NKX3-2:0.118602362376;SOX{8,9,10}:0.105921036466;NANOG:0.0920925952641;NFKB1_REL_RELA:0.0829896224237;HNF4A_NR2F1,2:0.046765915311;JUN:0.0200472728039;NFE2L2:0.0188857362761;GFI1B:0.0176652235326;MYB:0.016361631449;PAX8:0.0108155601568;ALX1:0.0040668921688;IKZF1:0.00171464399155;NR1H4:-0.00890259746001;EP300:-0.0111440725352;HOXA9_MEIS1:-0.0160143681159;NFE2L1:-0.0184019218767;ESR1:-0.0483555837481;PDX1:-0.0495322407934;HBP1_HMGB_SSRP1_UBTF:-0.0519865129144;AR:-0.0579628687615;TFAP4:-0.0632111352144;PAX1,9:-0.0677070594011;PITX1..3:-0.0681680265177;MAZ:-0.0716014452419;OCT4_SOX2{dimer}:-0.0723589693231;ZFP161:-0.080305363544;ARID5B:-0.101025207952;ATF6:-0.104298238888;MEF2{A,B,C,D}:-0.106964673437;ZNF143:-0.1090348426;STAT2,4,6:-0.115334393186;CEBPA,B_DDIT3:-0.131650297432;FOXD3:-0.156803642423;RORA:-0.162266314261;GATA6:-0.175234154072;RREB1:-0.181122742423;RXR{A,B,G}:-0.18976911532;MED-1{core}:-0.208336852875;CUX2:-0.218488886825;PAX6:-0.223391806938;HLF:-0.236202633823;ZBTB6:-0.241312781659;ETS1,2:-0.250494028314;FOXM1:-0.255870982936;ELK1,4_GABP{A,B1}:-0.259709802753;MTE{core}:-0.26097269153;AIRE:-0.262104289639;MYBL2:-0.265268843876;FOXL1:-0.267481910337;NRF1:-0.276577154463;DBP:-0.283127421008;IRF7:-0.293738941598;GTF2I:-0.29524002306;POU3F1..4:-0.302994465006;NHLH1,2:-0.306592161713;SOX2:-0.322566323325;EN1,2:-0.329846520616;RFX1:-0.340586128988;NKX2-1,4:-0.34882090286;ALX4:-0.352224321064;REST:-0.359652269486;KLF4:-0.385044610084;T:-0.388956387064;NKX2-2,8:-0.39717754999;HES1:-0.421608128978;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.424003306887;SRF:-0.428571304514;NFIL3:-0.434915868101;SPIB:-0.436331277896;NKX6-1,2:-0.440141820098;ATF2:-0.446444694217;HIF1A:-0.461258996847;GCM1,2:-0.483492063119;NKX3-1:-0.491917070486;IRF1,2:-0.495699724943;RUNX1..3:-0.501160444438;UFEwm:-0.511895632242;TAL1_TCF{3,4,12}:-0.51632878188;BREu{core}:-0.536501849903;HOX{A4,D4}:-0.541492426827;PAX3,7:-0.548244768601;FOXA2:-0.552423960422;EGR1..3:-0.559118307125;HMX1:-0.562830691235;SPI1:-0.588685267821;FOX{F1,F2,J1}:-0.613751816548;ATF5_CREB3:-0.615018058035;XBP1:-0.619009695547;ELF1,2,4:-0.641274159633;PAX2:-0.645899885448;SOX17:-0.648433290921;FOXN1:-0.668098270235;PATZ1:-0.687973389285;SREBF1,2:-0.689458712276;RFX2..5_RFXANK_RFXAP:-0.700909343538;ATF4:-0.708153077933;YY1:-0.728867327242;STAT1,3:-0.738046346343;PRDM1:-0.743612615324;CDX1,2,4:-0.748282665185;FOX{I1,J2}:-0.757506758941;HSF1,2:-0.763859766552;NFATC1..3:-0.786373719986;FOXP1:-0.790793707881;ZNF238:-0.809180200112;IKZF2:-0.814839298683;MZF1:-0.864564876198;TGIF1:-0.875347898231;SOX5:-0.89593102704;POU6F1:-0.931181883187;DMAP1_NCOR{1,2}_SMARC:-0.948876092793;MAFB:-0.958745791937;AHR_ARNT_ARNT2:-0.963415462604;FOXO1,3,4:-0.975775120754;MYFfamily:-0.98582970235;FOX{D1,D2}:-0.986759396274;SMAD1..7,9:-0.989145459071;EVI1:-1.03233833174;CREB1:-1.04615095932;NFIX:-1.08180717007;TOPORS:-1.12535596929;ZBTB16:-1.13994250225;ZNF384:-1.21122843317;FOXP3:-1.23097343658;PAX4:-1.23119575683;TLX2:-1.24277204908;HMGA1,2:-1.27105345486;RBPJ:-1.2959834224;BPTF:-1.34837576801;NANOG{mouse}:-1.40845998372;GATA4:-1.54693050619 | |top_motifs=ZEB1:1.89887899719;SNAI1..3:1.83032620745;MYOD1:1.71795880399;XCPE1{core}:1.71278791212;HNF1A:1.59039326191;ADNP_IRX_SIX_ZHX:1.58852351326;NKX2-3_NKX2-5:1.43597415401;LMO2:1.27577304918;ZNF148:1.15644575169;PBX1:1.14123927821;RXRA_VDR{dimer}:1.09607091065;SP1:1.02152117089;LHX3,4:0.974205926821;ESRRA:0.9668192794;bHLH_family:0.960848819856;PPARG:0.885595426349;TEAD1:0.818914016704;HOX{A5,B5}:0.781617279313;NFY{A,B,C}:0.742532346504;EBF1:0.739679632409;TBX4,5:0.724715600346;TEF:0.722961479197;TFCP2:0.713464077007;GFI1:0.709810639561;POU2F1..3:0.702497728637;HAND1,2:0.698751923888;VSX1,2:0.652771342414;TFDP1:0.560787341176;ZNF423:0.552453803101;FOXQ1:0.533255007711;GLI1..3:0.494567071336;E2F1..5:0.478268649506;ONECUT1,2:0.475538194127;LEF1_TCF7_TCF7L1,2:0.462911082332;GZF1:0.427753737334;ZIC1..3:0.417413856432;POU1F1:0.413118551519;PAX5:0.405360942266;NR5A1,2:0.398327234673;CDC5L:0.391342179536;TFAP2{A,C}:0.379401994126;NR3C1:0.378384368895;FOSL2:0.372594090215;NR6A1:0.354774094298;TBP:0.352569946072;SPZ1:0.324649840338;PRRX1,2:0.323631659403;FOS_FOS{B,L1}_JUN{B,D}:0.295017661844;TP53:0.287637846018;HIC1:0.283079074201;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.252888286012;GTF2A1,2:0.22340210708;CRX:0.205864208973;POU5F1:0.200665481381;TLX1..3_NFIC{dimer}:0.199602440659;HOX{A6,A7,B6,B7}:0.184228697983;BACH2:0.174937131163;NFE2:0.139231783849;STAT5{A,B}:0.136819917721;TFAP2B:0.130329211307;MTF1:0.119946771237;NKX3-2:0.118602362376;SOX{8,9,10}:0.105921036466;NANOG:0.0920925952641;NFKB1_REL_RELA:0.0829896224237;HNF4A_NR2F1,2:0.046765915311;JUN:0.0200472728039;NFE2L2:0.0188857362761;GFI1B:0.0176652235326;MYB:0.016361631449;PAX8:0.0108155601568;ALX1:0.0040668921688;IKZF1:0.00171464399155;NR1H4:-0.00890259746001;EP300:-0.0111440725352;HOXA9_MEIS1:-0.0160143681159;NFE2L1:-0.0184019218767;ESR1:-0.0483555837481;PDX1:-0.0495322407934;HBP1_HMGB_SSRP1_UBTF:-0.0519865129144;AR:-0.0579628687615;TFAP4:-0.0632111352144;PAX1,9:-0.0677070594011;PITX1..3:-0.0681680265177;MAZ:-0.0716014452419;OCT4_SOX2{dimer}:-0.0723589693231;ZFP161:-0.080305363544;ARID5B:-0.101025207952;ATF6:-0.104298238888;MEF2{A,B,C,D}:-0.106964673437;ZNF143:-0.1090348426;STAT2,4,6:-0.115334393186;CEBPA,B_DDIT3:-0.131650297432;FOXD3:-0.156803642423;RORA:-0.162266314261;GATA6:-0.175234154072;RREB1:-0.181122742423;RXR{A,B,G}:-0.18976911532;MED-1{core}:-0.208336852875;CUX2:-0.218488886825;PAX6:-0.223391806938;HLF:-0.236202633823;ZBTB6:-0.241312781659;ETS1,2:-0.250494028314;FOXM1:-0.255870982936;ELK1,4_GABP{A,B1}:-0.259709802753;MTE{core}:-0.26097269153;AIRE:-0.262104289639;MYBL2:-0.265268843876;FOXL1:-0.267481910337;NRF1:-0.276577154463;DBP:-0.283127421008;IRF7:-0.293738941598;GTF2I:-0.29524002306;POU3F1..4:-0.302994465006;NHLH1,2:-0.306592161713;SOX2:-0.322566323325;EN1,2:-0.329846520616;RFX1:-0.340586128988;NKX2-1,4:-0.34882090286;ALX4:-0.352224321064;REST:-0.359652269486;KLF4:-0.385044610084;T:-0.388956387064;NKX2-2,8:-0.39717754999;HES1:-0.421608128978;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.424003306887;SRF:-0.428571304514;NFIL3:-0.434915868101;SPIB:-0.436331277896;NKX6-1,2:-0.440141820098;ATF2:-0.446444694217;HIF1A:-0.461258996847;GCM1,2:-0.483492063119;NKX3-1:-0.491917070486;IRF1,2:-0.495699724943;RUNX1..3:-0.501160444438;UFEwm:-0.511895632242;TAL1_TCF{3,4,12}:-0.51632878188;BREu{core}:-0.536501849903;HOX{A4,D4}:-0.541492426827;PAX3,7:-0.548244768601;FOXA2:-0.552423960422;EGR1..3:-0.559118307125;HMX1:-0.562830691235;SPI1:-0.588685267821;FOX{F1,F2,J1}:-0.613751816548;ATF5_CREB3:-0.615018058035;XBP1:-0.619009695547;ELF1,2,4:-0.641274159633;PAX2:-0.645899885448;SOX17:-0.648433290921;FOXN1:-0.668098270235;PATZ1:-0.687973389285;SREBF1,2:-0.689458712276;RFX2..5_RFXANK_RFXAP:-0.700909343538;ATF4:-0.708153077933;YY1:-0.728867327242;STAT1,3:-0.738046346343;PRDM1:-0.743612615324;CDX1,2,4:-0.748282665185;FOX{I1,J2}:-0.757506758941;HSF1,2:-0.763859766552;NFATC1..3:-0.786373719986;FOXP1:-0.790793707881;ZNF238:-0.809180200112;IKZF2:-0.814839298683;MZF1:-0.864564876198;TGIF1:-0.875347898231;SOX5:-0.89593102704;POU6F1:-0.931181883187;DMAP1_NCOR{1,2}_SMARC:-0.948876092793;MAFB:-0.958745791937;AHR_ARNT_ARNT2:-0.963415462604;FOXO1,3,4:-0.975775120754;MYFfamily:-0.98582970235;FOX{D1,D2}:-0.986759396274;SMAD1..7,9:-0.989145459071;EVI1:-1.03233833174;CREB1:-1.04615095932;NFIX:-1.08180717007;TOPORS:-1.12535596929;ZBTB16:-1.13994250225;ZNF384:-1.21122843317;FOXP3:-1.23097343658;PAX4:-1.23119575683;TLX2:-1.24277204908;HMGA1,2:-1.27105345486;RBPJ:-1.2959834224;BPTF:-1.34837576801;NANOG{mouse}:-1.40845998372;GATA4:-1.54693050619 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11515-119H3;search_select_hide=table117:FF:11515-119H3 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Renal Proximal Tubular Epithelial Cell, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11330 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11330
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11330
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.528 |
| 10 | 10 | 0.122 |
| 100 | 100 | 0.285 |
| 101 | 101 | 0.00869 |
| 102 | 102 | 0.321 |
| 103 | 103 | 0.732 |
| 104 | 104 | 0.88 |
| 105 | 105 | 0.0996 |
| 106 | 106 | 0.169 |
| 107 | 107 | 0.0144 |
| 108 | 108 | 0.666 |
| 109 | 109 | 0.0556 |
| 11 | 11 | 0.518 |
| 110 | 110 | 0.541 |
| 111 | 111 | 0.972 |
| 112 | 112 | 0.508 |
| 113 | 113 | 0.115 |
| 114 | 114 | 0.0579 |
| 115 | 115 | 0.584 |
| 116 | 116 | 0.463 |
| 117 | 117 | 0.359 |
| 118 | 118 | 0.562 |
| 119 | 119 | 0.493 |
| 12 | 12 | 0.825 |
| 120 | 120 | 0.187 |
| 121 | 121 | 0.34 |
| 122 | 122 | 0.0179 |
| 123 | 123 | 0.0468 |
| 124 | 124 | 0.156 |
| 125 | 125 | 0.244 |
| 126 | 126 | 0.4 |
| 127 | 127 | 0.352 |
| 128 | 128 | 0.439 |
| 129 | 129 | 0.0372 |
| 13 | 13 | 0.152 |
| 130 | 130 | 0.322 |
| 131 | 131 | 0.0751 |
| 132 | 132 | 0.204 |
| 133 | 133 | 0.0185 |
| 134 | 134 | 0.55 |
| 135 | 135 | 0.327 |
| 136 | 136 | 0.076 |
| 137 | 137 | 0.283 |
| 138 | 138 | 0.209 |
| 139 | 139 | 0.102 |
| 14 | 14 | 0.388 |
| 140 | 140 | 0.468 |
| 141 | 141 | 0.541 |
| 142 | 142 | 0.805 |
| 143 | 143 | 0.569 |
| 144 | 144 | 0.316 |
| 145 | 145 | 0.485 |
| 146 | 146 | 0.0211 |
| 147 | 147 | 0.428 |
| 148 | 148 | 0.31 |
| 149 | 149 | 0.833 |
| 15 | 15 | 0.846 |
| 150 | 150 | 0.257 |
| 151 | 151 | 0.69 |
| 152 | 152 | 0.057 |
| 153 | 153 | 0.52 |
| 154 | 154 | 0.284 |
| 155 | 155 | 0.881 |
| 156 | 156 | 0.0216 |
| 157 | 157 | 0.955 |
| 158 | 158 | 0.303 |
| 159 | 159 | 0.516 |
| 16 | 16 | 0.245 |
| 160 | 160 | 0.171 |
| 161 | 161 | 0.705 |
| 162 | 162 | 0.138 |
| 163 | 163 | 0.495 |
| 164 | 164 | 0.3 |
| 165 | 165 | 0.441 |
| 166 | 166 | 0.537 |
| 167 | 167 | 0.315 |
| 168 | 168 | 0.812 |
| 169 | 169 | 0.288 |
| 17 | 17 | 0.422 |
| 18 | 18 | 0.958 |
| 19 | 19 | 0.972 |
| 2 | 2 | 0.267 |
| 20 | 20 | 0.932 |
| 21 | 21 | 0.337 |
| 22 | 22 | 0.419 |
| 23 | 23 | 0.38 |
| 24 | 24 | 0.455 |
| 25 | 25 | 0.866 |
| 26 | 26 | 0.309 |
| 27 | 27 | 0.292 |
| 28 | 28 | 0.92 |
| 29 | 29 | 0.76 |
| 3 | 3 | 0.367 |
| 30 | 30 | 0.0286 |
| 31 | 31 | 0.663 |
| 32 | 32 | 0.0457 |
| 33 | 33 | 0.0374 |
| 34 | 34 | 0.565 |
| 35 | 35 | 0.00706 |
| 36 | 36 | 0.904 |
| 37 | 37 | 0.736 |
| 38 | 38 | 0.394 |
| 39 | 39 | 0.242 |
| 4 | 4 | 0.17 |
| 40 | 40 | 0.0081 |
| 41 | 41 | 0.288 |
| 42 | 42 | 0.765 |
| 43 | 43 | 0.697 |
| 44 | 44 | 0.595 |
| 45 | 45 | 0.208 |
| 46 | 46 | 0.962 |
| 47 | 47 | 0.697 |
| 48 | 48 | 0.436 |
| 49 | 49 | 0.661 |
| 5 | 5 | 0.53 |
| 50 | 50 | 0.173 |
| 51 | 51 | 0.807 |
| 52 | 52 | 0.276 |
| 53 | 53 | 0.573 |
| 54 | 54 | 0.657 |
| 55 | 55 | 0.377 |
| 56 | 56 | 0.203 |
| 57 | 57 | 0.884 |
| 58 | 58 | 0.674 |
| 59 | 59 | 0.241 |
| 6 | 6 | 0.154 |
| 60 | 60 | 0.291 |
| 61 | 61 | 0.586 |
| 62 | 62 | 0.414 |
| 63 | 63 | 0.194 |
| 64 | 64 | 0.393 |
| 65 | 65 | 0.334 |
| 66 | 66 | 0.0331 |
| 67 | 67 | 0.657 |
| 68 | 68 | 0.588 |
| 69 | 69 | 0.443 |
| 7 | 7 | 0.406 |
| 70 | 70 | 0.0846 |
| 71 | 71 | 0.38 |
| 72 | 72 | 0.841 |
| 73 | 73 | 0.0785 |
| 74 | 74 | 0.198 |
| 75 | 75 | 0.615 |
| 76 | 76 | 0.0861 |
| 77 | 77 | 0.00637 |
| 78 | 78 | 0.642 |
| 79 | 79 | 0.0189 |
| 8 | 8 | 0.522 |
| 80 | 80 | 0.418 |
| 81 | 81 | 0.144 |
| 82 | 82 | 0.0873 |
| 83 | 83 | 0.982 |
| 84 | 84 | 0.649 |
| 85 | 85 | 0.28 |
| 86 | 86 | 0.458 |
| 87 | 87 | 0.0195 |
| 88 | 88 | 0.972 |
| 89 | 89 | 0.162 |
| 9 | 9 | 0.81 |
| 90 | 90 | 0.261 |
| 91 | 91 | 0.417 |
| 92 | 92 | 0.683 |
| 93 | 93 | 0.58 |
| 94 | 94 | 0.443 |
| 95 | 95 | 0.333 |
| 96 | 96 | 0.695 |
| 97 | 97 | 0.83 |
| 98 | 98 | 0.974 |
| 99 | 99 | 6.99081e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11330
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000155 human renal proximal tubular epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
