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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004781
|DRA_sample_Accession=CAGE@SAMD00004781
|accession_numbers=CAGE;DRX008474;DRR009346;DRZ000771;DRZ002156
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004781
|accession_numbers=CAGE;DRX008474;DRR009346;DRZ000771;DRZ002156;DRZ012121;DRZ013506
|accession_numbers_RNASeq=sRNA-Seq;DRX036997;DRR041363;DRZ007005
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001529,UBERON:0004535,UBERON:0004571,UBERON:0007204,UBERON:0004572,UBERON:0004537,UBERON:0001009
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002589
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002589
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|fonse_treatment_closure=
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|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg38.nobarcode.ctss.bed.gz
|id=FF:11433-118H2
|id=FF:11433-118H2
|is_a=EFO:0002091;;FF:0000169
|is_a=EFO:0002091;;FF:0000169
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|library_id=CNhs12043
|library_id=CNhs12043
|library_id_phase_based=2:CNhs12043
|library_id_phase_based=2:CNhs12043
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11433
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.TAGCTT.11433
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11433
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.TAGCTT.11433
|name=Smooth Muscle Cells - Brachiocephalic, donor3
|name=Smooth Muscle Cells - Brachiocephalic, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 92: Line 106:
|top_motifs=HIF1A:2.20667198736;PPARG:1.85257670204;ONECUT1,2:1.36028064264;IKZF1:1.24643136568;HOX{A5,B5}:1.21024016896;XBP1:1.16879653071;ALX1:1.15016432622;GTF2A1,2:1.09871854515;POU3F1..4:1.05529530472;ELK1,4_GABP{A,B1}:1.00532099968;NKX3-1:1.00218907197;POU1F1:0.963924769952;NFE2L1:0.949162333421;SRF:0.93117440492;FOX{I1,J2}:0.92960407349;GCM1,2:0.914998209913;HMX1:0.883168917773;CRX:0.804284584272;ADNP_IRX_SIX_ZHX:0.788537338662;HSF1,2:0.742802352274;TP53:0.736650046473;TEAD1:0.733046917859;TBP:0.718284307447;TFAP4:0.715402276872;HES1:0.708630967765;MAFB:0.707286369216;MYBL2:0.661966316033;NR3C1:0.647510283096;PAX8:0.643777983237;ZBTB6:0.63056145292;TAL1_TCF{3,4,12}:0.622322103801;ATF6:0.616731302809;MTE{core}:0.58398595987;SOX17:0.582932615746;GLI1..3:0.566052608192;NHLH1,2:0.565749715005;NANOG{mouse}:0.552878441798;HMGA1,2:0.534013106736;LEF1_TCF7_TCF7L1,2:0.531320002278;SMAD1..7,9:0.500457878623;TLX1..3_NFIC{dimer}:0.499228507668;EBF1:0.475579294158;NFIX:0.47539001743;ZNF238:0.47448959152;NFATC1..3:0.47020291028;CDC5L:0.455650089913;TBX4,5:0.443522367198;TFAP2B:0.408109440875;AHR_ARNT_ARNT2:0.405548817398;ZIC1..3:0.388090103604;PAX5:0.384149537075;FOSL2:0.378644367119;EN1,2:0.37766973293;HLF:0.37527299133;AIRE:0.334850299634;TFCP2:0.332368188343;HOXA9_MEIS1:0.330234199494;NFE2L2:0.324032322051;FOS_FOS{B,L1}_JUN{B,D}:0.319416594839;STAT5{A,B}:0.318955573903;NKX3-2:0.313489056156;NRF1:0.311951702962;SOX2:0.269108096201;BACH2:0.258621893509;ZNF143:0.224573042732;ZNF148:0.218001902553;CEBPA,B_DDIT3:0.214676288412;MEF2{A,B,C,D}:0.214555038179;ESRRA:0.208309817132;ELF1,2,4:0.178228193925;UFEwm:0.177939935174;ALX4:0.176357516232;GFI1B:0.161461841703;LHX3,4:0.129767503987;REST:0.122927127468;PBX1:0.0994884163671;EVI1:0.0973463866608;POU5F1:0.0972105101422;XCPE1{core}:0.0904617589708;MYOD1:0.0883205374171;NR5A1,2:0.069404267483;NANOG:0.0595603852991;JUN:0.058566012037;GATA6:0.0560212052821;KLF4:0.0555230635881;ARID5B:0.0452293176241;TLX2:0.0368302836613;ATF2:0.036249322557;MAZ:0.0220755398791;TGIF1:0.0170968899323;CREB1:0.0166175253261;PRDM1:0.0158419664448;HNF1A:0.0136247452826;NFKB1_REL_RELA:0.00130029352053;RFX1:-0.00152549560539;PAX2:-0.00495017152531;ZFP161:-0.00861972366248;GTF2I:-0.0203227292145;AR:-0.0348239558452;RBPJ:-0.041930020463;NFE2:-0.0539400391137;HIC1:-0.0639276093446;PRRX1,2:-0.0645460852103;PAX6:-0.0784054189083;GZF1:-0.0866311567248;HBP1_HMGB_SSRP1_UBTF:-0.0867317777281;TFAP2{A,C}:-0.089049289661;MYB:-0.09087375816;VSX1,2:-0.100607823124;ZNF384:-0.101785095265;FOXN1:-0.10427569308;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.106531300822;MTF1:-0.109814373042;bHLH_family:-0.11349358104;NKX2-2,8:-0.125689136114;MYFfamily:-0.158584510933;TEF:-0.178466977641;PAX1,9:-0.193008694109;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.195222975069;STAT2,4,6:-0.198473163941;RXR{A,B,G}:-0.204205113879;SPZ1:-0.2106841166;ZBTB16:-0.223071842829;MED-1{core}:-0.224739902721;IKZF2:-0.225676165205;ETS1,2:-0.229742463813;POU6F1:-0.235030121649;YY1:-0.238553553904;ATF4:-0.244285023711;IRF7:-0.248728108802;PATZ1:-0.251959172723;TFDP1:-0.257468071395;GFI1:-0.259746341425;SPI1:-0.263906024645;RUNX1..3:-0.266747704162;SOX{8,9,10}:-0.27455004706;HAND1,2:-0.281378698204;MZF1:-0.290423512767;SOX5:-0.296744862585;NFIL3:-0.307050316946;POU2F1..3:-0.324063841075;SP1:-0.333196773994;OCT4_SOX2{dimer}:-0.34560643863;FOXA2:-0.362679913319;FOX{F1,F2,J1}:-0.375579347482;EGR1..3:-0.376312699408;BPTF:-0.390807041497;SPIB:-0.41531281444;LMO2:-0.417102286384;HNF4A_NR2F1,2:-0.430739846099;PAX4:-0.435711363875;FOXM1:-0.448364725894;E2F1..5:-0.459512986756;ATF5_CREB3:-0.461720897729;FOX{D1,D2}:-0.462915809832;CDX1,2,4:-0.504831413132;TOPORS:-0.511705961719;IRF1,2:-0.521602512305;FOXQ1:-0.527531621357;ZEB1:-0.530404614563;NFY{A,B,C}:-0.538535878221;FOXL1:-0.550176031134;FOXP3:-0.592413286556;STAT1,3:-0.598970652949;ESR1:-0.601178937331;NR1H4:-0.6199675144;GATA4:-0.638885086884;RFX2..5_RFXANK_RFXAP:-0.641310003947;NKX2-3_NKX2-5:-0.666021270177;RORA:-0.679228113982;RXRA_VDR{dimer}:-0.686698051023;HOX{A4,D4}:-0.695165368899;SNAI1..3:-0.706258099441;PITX1..3:-0.709847157861;ZNF423:-0.776274373006;FOXP1:-0.778303529831;FOXD3:-0.830737508579;BREu{core}:-0.839809593629;T:-0.845877971565;CUX2:-0.858505857934;DMAP1_NCOR{1,2}_SMARC:-0.877884262026;PAX3,7:-0.941893460356;HOX{A6,A7,B6,B7}:-0.967126621834;NR6A1:-0.995840578353;SREBF1,2:-1.00705795082;RREB1:-1.13511728067;PDX1:-1.13629206991;NKX2-1,4:-1.18359422975;DBP:-1.20297584898;FOXO1,3,4:-1.21464459277;EP300:-1.31037987638;NKX6-1,2:-1.91033059527
|top_motifs=HIF1A:2.20667198736;PPARG:1.85257670204;ONECUT1,2:1.36028064264;IKZF1:1.24643136568;HOX{A5,B5}:1.21024016896;XBP1:1.16879653071;ALX1:1.15016432622;GTF2A1,2:1.09871854515;POU3F1..4:1.05529530472;ELK1,4_GABP{A,B1}:1.00532099968;NKX3-1:1.00218907197;POU1F1:0.963924769952;NFE2L1:0.949162333421;SRF:0.93117440492;FOX{I1,J2}:0.92960407349;GCM1,2:0.914998209913;HMX1:0.883168917773;CRX:0.804284584272;ADNP_IRX_SIX_ZHX:0.788537338662;HSF1,2:0.742802352274;TP53:0.736650046473;TEAD1:0.733046917859;TBP:0.718284307447;TFAP4:0.715402276872;HES1:0.708630967765;MAFB:0.707286369216;MYBL2:0.661966316033;NR3C1:0.647510283096;PAX8:0.643777983237;ZBTB6:0.63056145292;TAL1_TCF{3,4,12}:0.622322103801;ATF6:0.616731302809;MTE{core}:0.58398595987;SOX17:0.582932615746;GLI1..3:0.566052608192;NHLH1,2:0.565749715005;NANOG{mouse}:0.552878441798;HMGA1,2:0.534013106736;LEF1_TCF7_TCF7L1,2:0.531320002278;SMAD1..7,9:0.500457878623;TLX1..3_NFIC{dimer}:0.499228507668;EBF1:0.475579294158;NFIX:0.47539001743;ZNF238:0.47448959152;NFATC1..3:0.47020291028;CDC5L:0.455650089913;TBX4,5:0.443522367198;TFAP2B:0.408109440875;AHR_ARNT_ARNT2:0.405548817398;ZIC1..3:0.388090103604;PAX5:0.384149537075;FOSL2:0.378644367119;EN1,2:0.37766973293;HLF:0.37527299133;AIRE:0.334850299634;TFCP2:0.332368188343;HOXA9_MEIS1:0.330234199494;NFE2L2:0.324032322051;FOS_FOS{B,L1}_JUN{B,D}:0.319416594839;STAT5{A,B}:0.318955573903;NKX3-2:0.313489056156;NRF1:0.311951702962;SOX2:0.269108096201;BACH2:0.258621893509;ZNF143:0.224573042732;ZNF148:0.218001902553;CEBPA,B_DDIT3:0.214676288412;MEF2{A,B,C,D}:0.214555038179;ESRRA:0.208309817132;ELF1,2,4:0.178228193925;UFEwm:0.177939935174;ALX4:0.176357516232;GFI1B:0.161461841703;LHX3,4:0.129767503987;REST:0.122927127468;PBX1:0.0994884163671;EVI1:0.0973463866608;POU5F1:0.0972105101422;XCPE1{core}:0.0904617589708;MYOD1:0.0883205374171;NR5A1,2:0.069404267483;NANOG:0.0595603852991;JUN:0.058566012037;GATA6:0.0560212052821;KLF4:0.0555230635881;ARID5B:0.0452293176241;TLX2:0.0368302836613;ATF2:0.036249322557;MAZ:0.0220755398791;TGIF1:0.0170968899323;CREB1:0.0166175253261;PRDM1:0.0158419664448;HNF1A:0.0136247452826;NFKB1_REL_RELA:0.00130029352053;RFX1:-0.00152549560539;PAX2:-0.00495017152531;ZFP161:-0.00861972366248;GTF2I:-0.0203227292145;AR:-0.0348239558452;RBPJ:-0.041930020463;NFE2:-0.0539400391137;HIC1:-0.0639276093446;PRRX1,2:-0.0645460852103;PAX6:-0.0784054189083;GZF1:-0.0866311567248;HBP1_HMGB_SSRP1_UBTF:-0.0867317777281;TFAP2{A,C}:-0.089049289661;MYB:-0.09087375816;VSX1,2:-0.100607823124;ZNF384:-0.101785095265;FOXN1:-0.10427569308;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.106531300822;MTF1:-0.109814373042;bHLH_family:-0.11349358104;NKX2-2,8:-0.125689136114;MYFfamily:-0.158584510933;TEF:-0.178466977641;PAX1,9:-0.193008694109;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.195222975069;STAT2,4,6:-0.198473163941;RXR{A,B,G}:-0.204205113879;SPZ1:-0.2106841166;ZBTB16:-0.223071842829;MED-1{core}:-0.224739902721;IKZF2:-0.225676165205;ETS1,2:-0.229742463813;POU6F1:-0.235030121649;YY1:-0.238553553904;ATF4:-0.244285023711;IRF7:-0.248728108802;PATZ1:-0.251959172723;TFDP1:-0.257468071395;GFI1:-0.259746341425;SPI1:-0.263906024645;RUNX1..3:-0.266747704162;SOX{8,9,10}:-0.27455004706;HAND1,2:-0.281378698204;MZF1:-0.290423512767;SOX5:-0.296744862585;NFIL3:-0.307050316946;POU2F1..3:-0.324063841075;SP1:-0.333196773994;OCT4_SOX2{dimer}:-0.34560643863;FOXA2:-0.362679913319;FOX{F1,F2,J1}:-0.375579347482;EGR1..3:-0.376312699408;BPTF:-0.390807041497;SPIB:-0.41531281444;LMO2:-0.417102286384;HNF4A_NR2F1,2:-0.430739846099;PAX4:-0.435711363875;FOXM1:-0.448364725894;E2F1..5:-0.459512986756;ATF5_CREB3:-0.461720897729;FOX{D1,D2}:-0.462915809832;CDX1,2,4:-0.504831413132;TOPORS:-0.511705961719;IRF1,2:-0.521602512305;FOXQ1:-0.527531621357;ZEB1:-0.530404614563;NFY{A,B,C}:-0.538535878221;FOXL1:-0.550176031134;FOXP3:-0.592413286556;STAT1,3:-0.598970652949;ESR1:-0.601178937331;NR1H4:-0.6199675144;GATA4:-0.638885086884;RFX2..5_RFXANK_RFXAP:-0.641310003947;NKX2-3_NKX2-5:-0.666021270177;RORA:-0.679228113982;RXRA_VDR{dimer}:-0.686698051023;HOX{A4,D4}:-0.695165368899;SNAI1..3:-0.706258099441;PITX1..3:-0.709847157861;ZNF423:-0.776274373006;FOXP1:-0.778303529831;FOXD3:-0.830737508579;BREu{core}:-0.839809593629;T:-0.845877971565;CUX2:-0.858505857934;DMAP1_NCOR{1,2}_SMARC:-0.877884262026;PAX3,7:-0.941893460356;HOX{A6,A7,B6,B7}:-0.967126621834;NR6A1:-0.995840578353;SREBF1,2:-1.00705795082;RREB1:-1.13511728067;PDX1:-1.13629206991;NKX2-1,4:-1.18359422975;DBP:-1.20297584898;FOXO1,3,4:-1.21464459277;EP300:-1.31037987638;NKX6-1,2:-1.91033059527
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11433-118H2;search_select_hide=table117:FF:11433-118H2
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Smooth Muscle Cells - Brachiocephalic, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12043
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrachiocephalic artery
dev stageNA
sexunknown
ageNA
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1851
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004781
CollapseLibrary accession numbers

Library idMethodExp. accession idRun accession id
CNhs12043 CAGE DRX008474 DRR009346
CollapseAccession ID Hg19

Library idBAMCTSS
CNhs12043 DRZ000771 DRZ002156
CollapseAccession ID Hg38

Library idBAMCTSS
CNhs12043 DRZ012121 DRZ013506
Download raw sequence, BAM & CTSS
CollapseHg19
FastaBAMCTSS
downloaddownloaddonwload
CollapseHg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004781
CollapseLibrary accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.TAGCTT sRNA-Seq DRX036997 DRR041363
CollapseAccession ID Hg19

Library idBAMCTSS
SRhi10002.TAGCTT DRZ007005


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12043



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12043



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12043


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002589 (smooth muscle cell of the brachiocephalic vasculature)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001529 (brachiocephalic artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0007204 (brachiocephalic vasculature)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000169 (human smooth muscle cell of the brachiocephalic vasculature sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)