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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004970
|DRA_sample_Accession=CAGE@SAMD00004970
|accession_numbers=CAGE;DRX008205;DRR009077;DRZ000502;DRZ001887
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004970
|accession_numbers=CAGE;DRX008205;DRR009077;DRZ000502;DRZ001887;DRZ011852;DRZ013237
|accession_numbers_RNASeq=sRNA-Seq;DRX037220;DRR041586;DRZ007228
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor3.CNhs12021.11411-118E7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor3.CNhs12021.11411-118E7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor3.CNhs12021.11411-118E7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor3.CNhs12021.11411-118E7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor3.CNhs12021.11411-118E7.hg38.nobarcode.ctss.bed.gz
|id=FF:11411-118E7
|id=FF:11411-118E7
|is_a=EFO:0002091;;FF:0000245
|is_a=EFO:0002091;;FF:0000245
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|library_id=CNhs12021
|library_id=CNhs12021
|library_id_phase_based=2:CNhs12021
|library_id_phase_based=2:CNhs12021
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11411
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GTGAAA.11411
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11411
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GTGAAA.11411
|name=Chondrocyte - re diff, donor3
|name=Chondrocyte - re diff, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 92: Line 106:
|top_motifs=ALX4:2.97880510057;HES1:2.93321055986;ATF6:2.71491633345;HIF1A:2.62024452284;RXRA_VDR{dimer}:2.53928827162;NANOG{mouse}:1.97456240493;XBP1:1.95334735297;HMGA1,2:1.9413188449;EVI1:1.93984593443;GLI1..3:1.68451315097;PAX1,9:1.65194408836;UFEwm:1.6386502105;NR6A1:1.55719806962;TAL1_TCF{3,4,12}:1.55057223169;EBF1:1.48479013287;HMX1:1.45773084783;GTF2A1,2:1.43462232557;STAT2,4,6:1.42045236015;TBP:1.24330275644;ZNF423:1.1914713683;MTF1:1.17280544466;RXR{A,B,G}:1.16767947687;SMAD1..7,9:1.08584714656;TFCP2:1.08511031729;XCPE1{core}:1.02339619959;POU3F1..4:0.979432467129;FOXL1:0.970959957298;NKX2-1,4:0.964288443291;EN1,2:0.920002076011;DBP:0.904878152455;ZNF238:0.893480571866;TFAP2B:0.875022868675;TFAP2{A,C}:0.851788158649;MTE{core}:0.85084891624;TLX1..3_NFIC{dimer}:0.833283883168;AHR_ARNT_ARNT2:0.824894418793;EP300:0.819887885594;HIC1:0.815712099015;POU6F1:0.808512279708;ESR1:0.804241488011;MAZ:0.77135064814;TEAD1:0.760647937071;STAT1,3:0.750914517489;IKZF1:0.750590336212;MAFB:0.730644877177;PAX4:0.72381592967;NFATC1..3:0.704512183871;AR:0.666650417867;GCM1,2:0.625886429042;GTF2I:0.621746601847;TOPORS:0.601976272969;PRDM1:0.532058938926;PPARG:0.518995406581;HLF:0.475590836081;ZIC1..3:0.448923120695;TFAP4:0.414638797847;MYBL2:0.409159169416;HOX{A6,A7,B6,B7}:0.395631224222;HOX{A5,B5}:0.384532190161;MEF2{A,B,C,D}:0.375322748277;RREB1:0.365119885222;NKX3-1:0.304115890506;HBP1_HMGB_SSRP1_UBTF:0.296569995524;SP1:0.283855944459;TP53:0.274775460265;REST:0.261527109193;GFI1B:0.233186766662;PATZ1:0.227148752469;ZNF148:0.219243002594;CREB1:0.150535866018;ATF5_CREB3:0.137704188597;TLX2:0.13740304284;NFIL3:0.133549227923;MED-1{core}:0.126596618131;BACH2:0.11596046339;NFKB1_REL_RELA:0.0970116576357;EGR1..3:0.0818827240265;NR3C1:0.073490807743;SPZ1:0.0713473500428;MYFfamily:0.0682652254897;ELK1,4_GABP{A,B1}:0.0651740118806;POU1F1:0.0601125868941;FOX{D1,D2}:0.0540559861184;SRF:0.0383112093317;PITX1..3:0.020134551151;FOS_FOS{B,L1}_JUN{B,D}:0.0103589733536;TBX4,5:0.0099933995178;ATF4:-0.0116120557816;NR1H4:-0.0185535073368;HAND1,2:-0.0258959064172;PAX8:-0.0282979526959;HOX{A4,D4}:-0.03091029548;RFX1:-0.0424842875977;IRF1,2:-0.0474005399001;CEBPA,B_DDIT3:-0.0530298891703;NFE2:-0.0672349944186;PAX5:-0.0882339293407;HNF1A:-0.107201722534;STAT5{A,B}:-0.112892559858;MZF1:-0.121970808633;SOX17:-0.124512593886;JUN:-0.132947645252;BPTF:-0.137135341271;NFE2L2:-0.143148994476;RUNX1..3:-0.161255528143;TFDP1:-0.161364117645;LHX3,4:-0.168620219129;NKX3-2:-0.170631684393;FOSL2:-0.175143447702;MYB:-0.182318144896;YY1:-0.199672258013;ATF2:-0.224769083425;ONECUT1,2:-0.270566929463;ZBTB6:-0.272158737132;PAX3,7:-0.274488508707;RORA:-0.27538379331;PBX1:-0.300718930118;CDC5L:-0.301455457514;ZFP161:-0.3134880019;PAX2:-0.322220511516;GFI1:-0.328652048361;KLF4:-0.338331060737;HSF1,2:-0.34037978708;NKX2-3_NKX2-5:-0.350032298911;ZNF143:-0.383326020636;bHLH_family:-0.410212070425;VSX1,2:-0.432182396206;GATA4:-0.438956945476;SREBF1,2:-0.460612826671;NHLH1,2:-0.461202079198;ZNF384:-0.464989509945;FOXP1:-0.472955943468;SOX{8,9,10}:-0.495224876191;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.510307358075;GZF1:-0.525270239425;LEF1_TCF7_TCF7L1,2:-0.547102896794;FOXN1:-0.565263587545;POU5F1:-0.576494500208;IKZF2:-0.606528994248;PRRX1,2:-0.622172271375;NRF1:-0.625549817762;ETS1,2:-0.651898902413;TEF:-0.656455176071;NKX2-2,8:-0.660515669203;SNAI1..3:-0.663632341471;LMO2:-0.664566551883;SPI1:-0.705338627339;T:-0.706846886057;BREu{core}:-0.707981314488;IRF7:-0.710888464152;POU2F1..3:-0.723627534882;NR5A1,2:-0.736058223045;E2F1..5:-0.737349862573;HNF4A_NR2F1,2:-0.738030453479;ESRRA:-0.743651991322;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.7436552353;ELF1,2,4:-0.750179346801;NFE2L1:-0.76102426341;NFY{A,B,C}:-0.785953262428;CDX1,2,4:-0.795372452985;FOXM1:-0.795494139676;FOXA2:-0.925097957839;SPIB:-0.933640087707;DMAP1_NCOR{1,2}_SMARC:-0.958137959324;ZEB1:-0.995390592147;TGIF1:-1.01709126376;ZBTB16:-1.02227149839;HOXA9_MEIS1:-1.0550093925;SOX2:-1.05944335933;RFX2..5_RFXANK_RFXAP:-1.08459918323;FOXP3:-1.12715559919;AIRE:-1.15486838492;ARID5B:-1.16314445721;NKX6-1,2:-1.16600313334;PDX1:-1.17887193526;FOXO1,3,4:-1.22476804932;CUX2:-1.24370512663;PAX6:-1.27257763636;GATA6:-1.30216774681;FOX{F1,F2,J1}:-1.41579002085;SOX5:-1.43038745495;ALX1:-1.47425809201;RBPJ:-1.48566145653;CRX:-1.5475103101;NANOG:-1.61338267249;OCT4_SOX2{dimer}:-1.66319641359;ADNP_IRX_SIX_ZHX:-1.67236647548;NFIX:-1.69392326807;FOX{I1,J2}:-1.70713609424;FOXD3:-1.71310474235;MYOD1:-2.11801870423;FOXQ1:-2.22129413855
|top_motifs=ALX4:2.97880510057;HES1:2.93321055986;ATF6:2.71491633345;HIF1A:2.62024452284;RXRA_VDR{dimer}:2.53928827162;NANOG{mouse}:1.97456240493;XBP1:1.95334735297;HMGA1,2:1.9413188449;EVI1:1.93984593443;GLI1..3:1.68451315097;PAX1,9:1.65194408836;UFEwm:1.6386502105;NR6A1:1.55719806962;TAL1_TCF{3,4,12}:1.55057223169;EBF1:1.48479013287;HMX1:1.45773084783;GTF2A1,2:1.43462232557;STAT2,4,6:1.42045236015;TBP:1.24330275644;ZNF423:1.1914713683;MTF1:1.17280544466;RXR{A,B,G}:1.16767947687;SMAD1..7,9:1.08584714656;TFCP2:1.08511031729;XCPE1{core}:1.02339619959;POU3F1..4:0.979432467129;FOXL1:0.970959957298;NKX2-1,4:0.964288443291;EN1,2:0.920002076011;DBP:0.904878152455;ZNF238:0.893480571866;TFAP2B:0.875022868675;TFAP2{A,C}:0.851788158649;MTE{core}:0.85084891624;TLX1..3_NFIC{dimer}:0.833283883168;AHR_ARNT_ARNT2:0.824894418793;EP300:0.819887885594;HIC1:0.815712099015;POU6F1:0.808512279708;ESR1:0.804241488011;MAZ:0.77135064814;TEAD1:0.760647937071;STAT1,3:0.750914517489;IKZF1:0.750590336212;MAFB:0.730644877177;PAX4:0.72381592967;NFATC1..3:0.704512183871;AR:0.666650417867;GCM1,2:0.625886429042;GTF2I:0.621746601847;TOPORS:0.601976272969;PRDM1:0.532058938926;PPARG:0.518995406581;HLF:0.475590836081;ZIC1..3:0.448923120695;TFAP4:0.414638797847;MYBL2:0.409159169416;HOX{A6,A7,B6,B7}:0.395631224222;HOX{A5,B5}:0.384532190161;MEF2{A,B,C,D}:0.375322748277;RREB1:0.365119885222;NKX3-1:0.304115890506;HBP1_HMGB_SSRP1_UBTF:0.296569995524;SP1:0.283855944459;TP53:0.274775460265;REST:0.261527109193;GFI1B:0.233186766662;PATZ1:0.227148752469;ZNF148:0.219243002594;CREB1:0.150535866018;ATF5_CREB3:0.137704188597;TLX2:0.13740304284;NFIL3:0.133549227923;MED-1{core}:0.126596618131;BACH2:0.11596046339;NFKB1_REL_RELA:0.0970116576357;EGR1..3:0.0818827240265;NR3C1:0.073490807743;SPZ1:0.0713473500428;MYFfamily:0.0682652254897;ELK1,4_GABP{A,B1}:0.0651740118806;POU1F1:0.0601125868941;FOX{D1,D2}:0.0540559861184;SRF:0.0383112093317;PITX1..3:0.020134551151;FOS_FOS{B,L1}_JUN{B,D}:0.0103589733536;TBX4,5:0.0099933995178;ATF4:-0.0116120557816;NR1H4:-0.0185535073368;HAND1,2:-0.0258959064172;PAX8:-0.0282979526959;HOX{A4,D4}:-0.03091029548;RFX1:-0.0424842875977;IRF1,2:-0.0474005399001;CEBPA,B_DDIT3:-0.0530298891703;NFE2:-0.0672349944186;PAX5:-0.0882339293407;HNF1A:-0.107201722534;STAT5{A,B}:-0.112892559858;MZF1:-0.121970808633;SOX17:-0.124512593886;JUN:-0.132947645252;BPTF:-0.137135341271;NFE2L2:-0.143148994476;RUNX1..3:-0.161255528143;TFDP1:-0.161364117645;LHX3,4:-0.168620219129;NKX3-2:-0.170631684393;FOSL2:-0.175143447702;MYB:-0.182318144896;YY1:-0.199672258013;ATF2:-0.224769083425;ONECUT1,2:-0.270566929463;ZBTB6:-0.272158737132;PAX3,7:-0.274488508707;RORA:-0.27538379331;PBX1:-0.300718930118;CDC5L:-0.301455457514;ZFP161:-0.3134880019;PAX2:-0.322220511516;GFI1:-0.328652048361;KLF4:-0.338331060737;HSF1,2:-0.34037978708;NKX2-3_NKX2-5:-0.350032298911;ZNF143:-0.383326020636;bHLH_family:-0.410212070425;VSX1,2:-0.432182396206;GATA4:-0.438956945476;SREBF1,2:-0.460612826671;NHLH1,2:-0.461202079198;ZNF384:-0.464989509945;FOXP1:-0.472955943468;SOX{8,9,10}:-0.495224876191;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.510307358075;GZF1:-0.525270239425;LEF1_TCF7_TCF7L1,2:-0.547102896794;FOXN1:-0.565263587545;POU5F1:-0.576494500208;IKZF2:-0.606528994248;PRRX1,2:-0.622172271375;NRF1:-0.625549817762;ETS1,2:-0.651898902413;TEF:-0.656455176071;NKX2-2,8:-0.660515669203;SNAI1..3:-0.663632341471;LMO2:-0.664566551883;SPI1:-0.705338627339;T:-0.706846886057;BREu{core}:-0.707981314488;IRF7:-0.710888464152;POU2F1..3:-0.723627534882;NR5A1,2:-0.736058223045;E2F1..5:-0.737349862573;HNF4A_NR2F1,2:-0.738030453479;ESRRA:-0.743651991322;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.7436552353;ELF1,2,4:-0.750179346801;NFE2L1:-0.76102426341;NFY{A,B,C}:-0.785953262428;CDX1,2,4:-0.795372452985;FOXM1:-0.795494139676;FOXA2:-0.925097957839;SPIB:-0.933640087707;DMAP1_NCOR{1,2}_SMARC:-0.958137959324;ZEB1:-0.995390592147;TGIF1:-1.01709126376;ZBTB16:-1.02227149839;HOXA9_MEIS1:-1.0550093925;SOX2:-1.05944335933;RFX2..5_RFXANK_RFXAP:-1.08459918323;FOXP3:-1.12715559919;AIRE:-1.15486838492;ARID5B:-1.16314445721;NKX6-1,2:-1.16600313334;PDX1:-1.17887193526;FOXO1,3,4:-1.22476804932;CUX2:-1.24370512663;PAX6:-1.27257763636;GATA6:-1.30216774681;FOX{F1,F2,J1}:-1.41579002085;SOX5:-1.43038745495;ALX1:-1.47425809201;RBPJ:-1.48566145653;CRX:-1.5475103101;NANOG:-1.61338267249;OCT4_SOX2{dimer}:-1.66319641359;ADNP_IRX_SIX_ZHX:-1.67236647548;NFIX:-1.69392326807;FOX{I1,J2}:-1.70713609424;FOXD3:-1.71310474235;MYOD1:-2.11801870423;FOXQ1:-2.22129413855
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11411-118E7;search_select_hide=table117:FF:11411-118E7
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Chondrocyte - re diff, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12021
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecartilage
dev stage57 years old adult
sexmale
age57
cell typechondrocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1737
catalog numberCA402RD-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004970
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12021 CAGE DRX008205 DRR009077
Accession ID Hg19

Library idBAMCTSS
CNhs12021 DRZ000502 DRZ001887
Accession ID Hg38

Library idBAMCTSS
CNhs12021 DRZ011852 DRZ013237
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004970
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.GTGAAA sRNA-Seq DRX037220 DRR041586
Accession ID Hg19

Library idBAMCTSS
SRhi10013.GTGAAA DRZ007228


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.221
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.285
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.51
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0496
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0121
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.536
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.787
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.981
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.835
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.391
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.131
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.865
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.198
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing1.622
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.469
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.536
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.169
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00812
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.274
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.69
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.391
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal1.256
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal1.378
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.101
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal1.068
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.268
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.172
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.031
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.763
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12021

Jaspar motifP-value
MA0002.20.0561
MA0003.10.397
MA0004.10.12
MA0006.10.214
MA0007.10.964
MA0009.10.378
MA0014.10.157
MA0017.10.0625
MA0018.20.609
MA0019.10.413
MA0024.10.00148
MA0025.10.507
MA0027.10.493
MA0028.10.0629
MA0029.10.0532
MA0030.10.316
MA0031.10.282
MA0035.20.00437
MA0038.10.158
MA0039.20.113
MA0040.10.669
MA0041.10.322
MA0042.10.944
MA0043.10.562
MA0046.10.184
MA0047.20.709
MA0048.10.00634
MA0050.10.147
MA0051.10.688
MA0052.10.146
MA0055.10.212
MA0057.10.501
MA0058.10.0596
MA0059.10.162
MA0060.13.76356e-5
MA0061.10.624
MA0062.21.16525e-5
MA0065.20.442
MA0066.10.631
MA0067.10.241
MA0068.10.691
MA0069.10.0528
MA0070.10.902
MA0071.10.849
MA0072.10.693
MA0073.10.544
MA0074.10.148
MA0076.10.0448
MA0077.10.268
MA0078.10.85
MA0079.20.489
MA0080.25.72177e-7
MA0081.10.00486
MA0083.10.292
MA0084.10.279
MA0087.10.386
MA0088.10.0279
MA0090.10.0134
MA0091.10.468
MA0092.10.579
MA0093.10.132
MA0099.20.0456
MA0100.10.111
MA0101.10.713
MA0102.20.601
MA0103.10.00326
MA0104.20.00533
MA0105.10.0478
MA0106.10.962
MA0107.10.833
MA0108.28.33314e-5
MA0111.10.0331
MA0112.20.208
MA0113.10.795
MA0114.10.0905
MA0115.10.0728
MA0116.10.914
MA0117.10.981
MA0119.10.904
MA0122.10.649
MA0124.10.12
MA0125.10.218
MA0131.10.83
MA0135.10.735
MA0136.16.82553e-8
MA0137.20.112
MA0138.20.324
MA0139.10.379
MA0140.10.00131
MA0141.10.749
MA0142.10.0293
MA0143.10.466
MA0144.10.28
MA0145.10.64
MA0146.10.394
MA0147.10.0152
MA0148.10.676
MA0149.10.283
MA0150.10.0978
MA0152.10.00229
MA0153.10.951
MA0154.10.653
MA0155.10.071
MA0156.18.39588e-7
MA0157.10.627
MA0159.10.511
MA0160.10.644
MA0162.10.221
MA0163.10.163
MA0164.10.425
MA0258.10.969
MA0259.10.782



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12021

Novel motifP-value
10.253
100.524
1000.544
1010.121
1020.833
1030.759
1040.81
1050.00122
1060.245
1070.0455
1080.352
1090.711
110.622
1100.466
1110.881
1120.884
1130.122
1140.701
1150.0422
1160.0326
1170.321
1180.969
1190.353
120.423
1200.776
1210.223
1220.0537
1230.244
1240.0381
1250.758
1260.329
1270.699
1280.212
1290.298
130.714
1300.464
1310.749
1320.122
1330.432
1340.878
1350.614
1360.773
1370.448
1380.739
1390.306
140.364
1400.402
1410.408
1420.132
1430.57
1440.139
1450.428
1460.419
1470.617
1480.249
1490.00887
150.262
1500.3
1510.752
1520.0366
1530.696
1540.897
1550.892
1560.879
1570.311
1580.00743
1590.439
160.0968
1600.658
1610.658
1620.814
1630.911
1640.089
1650.815
1660.0161
1670.749
1680.325
1690.103
170.922
180.751
190.0169
20.198
200.795
210.801
220.237
230.314
240.071
250.155
260.599
270.552
280.142
290.271
30.539
300.561
310.593
323.68898e-12
330.44
340.467
350.427
360.0486
370.701
380.632
390.604
40.852
400.356
410.166
420.287
430.865
440.7
450.463
460.873
470.038
480.394
490.47
50.906
500.522
510.403
520.538
530.134
540.483
550.905
560.965
570.299
580.214
590.0213
60.213
600.447
610.59
620.374
630.719
640.329
650.458
660.0374
670.79
680.683
690.387
70.416
700.465
710.356
720.33
730.0141
740.453
750.633
760.355
770.00305
780.249
790.00263
80.756
800.159
810.762
820.705
830.0478
840.892
850.133
860.647
870.386
880.361
890.0729
90.788
900.133
910.886
920.581
930.682
940.31
950.754
960.858
970.483
980.989
990.301



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12021


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000037 (human chondrocyte sample)
0000245 (human chondrocyte re-differentiated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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