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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005940
|DRA_sample_Accession=CAGE@SAMD00005940
|accession_numbers=CAGE;DRX008225;DRR009097;DRZ000522;DRZ001907
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005940
|accession_numbers=CAGE;DRX008225;DRR009097;DRZ000522;DRZ001907;DRZ011872;DRZ013257
|accession_numbers_RNASeq=sRNA-Seq;DRX037065;DRR041431;DRZ007073
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11393
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGGCC.11393
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGGCC.11393
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11393
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGGCC.11393
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGGCC.11393
|name=Endothelial Cells - Lymphatic, donor3
|name=Endothelial Cells - Lymphatic, donor3
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 101: Line 106:
|top_motifs=FOX{I1,J2}:2.28751906807;PAX6:1.92786867702;SOX5:1.84327032791;SOX{8,9,10}:1.8267403761;SOX2:1.75981887595;HBP1_HMGB_SSRP1_UBTF:1.72016221974;RXR{A,B,G}:1.69528390452;NFATC1..3:1.5299089024;IKZF2:1.23465843157;ELF1,2,4:1.18878216371;LEF1_TCF7_TCF7L1,2:1.11969382711;SREBF1,2:1.06752675013;SPZ1:1.04175074943;ADNP_IRX_SIX_ZHX:0.994167321958;ZFP161:0.95525459101;STAT1,3:0.907753442499;RBPJ:0.870535309154;PAX4:0.86512429418;AR:0.86509395345;ETS1,2:0.835039327354;GATA6:0.833861483327;FOXN1:0.805543031387;TLX1..3_NFIC{dimer}:0.771715135737;HAND1,2:0.76427531676;ALX1:0.745710105586;SOX17:0.734699982125;IKZF1:0.725512042663;bHLH_family:0.699830175749;LHX3,4:0.679010789612;FOX{D1,D2}:0.678107917209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.654671339366;TP53:0.646090001881;ARID5B:0.645349404895;SPIB:0.640989741314;TEF:0.625948191101;MED-1{core}:0.622405547845;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.614474644672;HMGA1,2:0.602337918993;NANOG:0.563170195648;BPTF:0.559026733182;PAX3,7:0.542017988503;TFAP2{A,C}:0.535261410236;TEAD1:0.51557801799;HIF1A:0.507036942464;PRDM1:0.505609306189;FOXA2:0.502563718131;POU3F1..4:0.479826180991;CDC5L:0.460496011961;PAX1,9:0.452435196618;TFAP4:0.450617995905;TFDP1:0.442971831758;GFI1B:0.43396454095;MTE{core}:0.422591011592;MYOD1:0.422467081898;EGR1..3:0.411214056781;MAZ:0.410281129782;PITX1..3:0.381413426905;NRF1:0.379794383707;SMAD1..7,9:0.369745258509;FOXQ1:0.362654929209;POU1F1:0.351981992175;STAT2,4,6:0.351261086086;GZF1:0.348826125637;SP1:0.323995115232;PAX5:0.295959508974;XCPE1{core}:0.275914198059;FOXO1,3,4:0.244375575029;TFAP2B:0.242272530326;ATF2:0.237699639397;TAL1_TCF{3,4,12}:0.230127701963;NR3C1:0.219220891736;ZNF143:0.213410411994;CUX2:0.189908668043;TGIF1:0.181072220529;GATA4:0.165568128895;MYB:0.139866288253;YY1:0.128679367945;NFY{A,B,C}:0.122167479499;T:0.121759431583;PBX1:0.118411139281;FOXD3:0.111024999079;PAX2:0.109944882392;PAX8:0.10203393874;NHLH1,2:0.101864313775;GCM1,2:0.0921091180738;SPI1:0.0894161956704;TLX2:0.0654066009396;HOXA9_MEIS1:0.0642832430038;ZBTB6:0.0618654230651;NFKB1_REL_RELA:0.0321079859193;HIC1:0.0235800792316;IRF1,2:0.0214171313383;EVI1:0.0203851579434;E2F1..5:0.00941154562971;EN1,2:0.00901546881738;SRF:-0.000206495698527;MZF1:-0.0133231050928;NFE2L2:-0.0184326942371;ZNF238:-0.0197584658572;NFE2:-0.022582813922;NKX2-3_NKX2-5:-0.0247607969831;FOSL2:-0.0426056428274;XBP1:-0.0433253072246;BACH2:-0.0567380896156;RORA:-0.0579111328258;MEF2{A,B,C,D}:-0.0614874931605;GTF2I:-0.0722469701928;MYFfamily:-0.0810341246924;FOS_FOS{B,L1}_JUN{B,D}:-0.130813566022;FOX{F1,F2,J1}:-0.14085494561;GFI1:-0.148638289801;PDX1:-0.151252560646;ATF6:-0.156580743492;DMAP1_NCOR{1,2}_SMARC:-0.159555381593;PATZ1:-0.164160324413;HNF1A:-0.166181869893;CREB1:-0.170396543425;LMO2:-0.176195241506;NFIX:-0.182138220421;REST:-0.187470334068;AHR_ARNT_ARNT2:-0.18982047013;ZIC1..3:-0.201038280626;ZBTB16:-0.204289555159;CRX:-0.207854293035;NKX2-2,8:-0.236989104676;HNF4A_NR2F1,2:-0.249077530268;UFEwm:-0.266282557848;NKX3-2:-0.280490350562;IRF7:-0.280629019844;ATF4:-0.287401004003;FOXP1:-0.306311807565;ZNF148:-0.31529124443;HLF:-0.31945635154;NANOG{mouse}:-0.324609896988;NR5A1,2:-0.331270476824;POU6F1:-0.343360555189;FOXL1:-0.362820926196;NKX2-1,4:-0.364336474353;ONECUT1,2:-0.369579510271;FOXM1:-0.382361207068;EP300:-0.384594288797;PRRX1,2:-0.406929183339;RFX1:-0.42505487194;JUN:-0.432208922641;ESRRA:-0.441714424303;HSF1,2:-0.443366771091;TBP:-0.449443834705;ELK1,4_GABP{A,B1}:-0.465162968768;OCT4_SOX2{dimer}:-0.473768547094;CEBPA,B_DDIT3:-0.483274249842;HMX1:-0.487300028321;MYBL2:-0.49210776048;RFX2..5_RFXANK_RFXAP:-0.525551437044;GTF2A1,2:-0.532543457598;FOXP3:-0.548059901072;HOX{A5,B5}:-0.591998573675;ZNF384:-0.594929941248;KLF4:-0.608995587796;CDX1,2,4:-0.615223422183;ATF5_CREB3:-0.626421704572;EBF1:-0.630246296261;STAT5{A,B}:-0.638453783136;ALX4:-0.639379458027;BREu{core}:-0.643345642319;MAFB:-0.645709040844;PPARG:-0.661895178914;NR6A1:-0.668161962863;SNAI1..3:-0.679453160087;RREB1:-0.680074346015;HES1:-0.705243367401;NKX3-1:-0.736739821264;RUNX1..3:-0.741112018779;TBX4,5:-0.743274617465;TOPORS:-0.754445048516;ZEB1:-0.768545323689;NFE2L1:-0.777939354499;HOX{A6,A7,B6,B7}:-0.788774832523;AIRE:-0.817479290224;GLI1..3:-0.86040006327;TFCP2:-0.882784228231;MTF1:-0.893848074979;RXRA_VDR{dimer}:-0.93068631635;POU5F1:-0.998640059902;NR1H4:-1.00440485273;DBP:-1.0129761465;NFIL3:-1.15226203899;HOX{A4,D4}:-1.20742182423;ZNF423:-1.23624793468;ESR1:-1.27856648204;NKX6-1,2:-1.30016752483;VSX1,2:-1.44496138797;POU2F1..3:-1.48385090819
|top_motifs=FOX{I1,J2}:2.28751906807;PAX6:1.92786867702;SOX5:1.84327032791;SOX{8,9,10}:1.8267403761;SOX2:1.75981887595;HBP1_HMGB_SSRP1_UBTF:1.72016221974;RXR{A,B,G}:1.69528390452;NFATC1..3:1.5299089024;IKZF2:1.23465843157;ELF1,2,4:1.18878216371;LEF1_TCF7_TCF7L1,2:1.11969382711;SREBF1,2:1.06752675013;SPZ1:1.04175074943;ADNP_IRX_SIX_ZHX:0.994167321958;ZFP161:0.95525459101;STAT1,3:0.907753442499;RBPJ:0.870535309154;PAX4:0.86512429418;AR:0.86509395345;ETS1,2:0.835039327354;GATA6:0.833861483327;FOXN1:0.805543031387;TLX1..3_NFIC{dimer}:0.771715135737;HAND1,2:0.76427531676;ALX1:0.745710105586;SOX17:0.734699982125;IKZF1:0.725512042663;bHLH_family:0.699830175749;LHX3,4:0.679010789612;FOX{D1,D2}:0.678107917209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.654671339366;TP53:0.646090001881;ARID5B:0.645349404895;SPIB:0.640989741314;TEF:0.625948191101;MED-1{core}:0.622405547845;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.614474644672;HMGA1,2:0.602337918993;NANOG:0.563170195648;BPTF:0.559026733182;PAX3,7:0.542017988503;TFAP2{A,C}:0.535261410236;TEAD1:0.51557801799;HIF1A:0.507036942464;PRDM1:0.505609306189;FOXA2:0.502563718131;POU3F1..4:0.479826180991;CDC5L:0.460496011961;PAX1,9:0.452435196618;TFAP4:0.450617995905;TFDP1:0.442971831758;GFI1B:0.43396454095;MTE{core}:0.422591011592;MYOD1:0.422467081898;EGR1..3:0.411214056781;MAZ:0.410281129782;PITX1..3:0.381413426905;NRF1:0.379794383707;SMAD1..7,9:0.369745258509;FOXQ1:0.362654929209;POU1F1:0.351981992175;STAT2,4,6:0.351261086086;GZF1:0.348826125637;SP1:0.323995115232;PAX5:0.295959508974;XCPE1{core}:0.275914198059;FOXO1,3,4:0.244375575029;TFAP2B:0.242272530326;ATF2:0.237699639397;TAL1_TCF{3,4,12}:0.230127701963;NR3C1:0.219220891736;ZNF143:0.213410411994;CUX2:0.189908668043;TGIF1:0.181072220529;GATA4:0.165568128895;MYB:0.139866288253;YY1:0.128679367945;NFY{A,B,C}:0.122167479499;T:0.121759431583;PBX1:0.118411139281;FOXD3:0.111024999079;PAX2:0.109944882392;PAX8:0.10203393874;NHLH1,2:0.101864313775;GCM1,2:0.0921091180738;SPI1:0.0894161956704;TLX2:0.0654066009396;HOXA9_MEIS1:0.0642832430038;ZBTB6:0.0618654230651;NFKB1_REL_RELA:0.0321079859193;HIC1:0.0235800792316;IRF1,2:0.0214171313383;EVI1:0.0203851579434;E2F1..5:0.00941154562971;EN1,2:0.00901546881738;SRF:-0.000206495698527;MZF1:-0.0133231050928;NFE2L2:-0.0184326942371;ZNF238:-0.0197584658572;NFE2:-0.022582813922;NKX2-3_NKX2-5:-0.0247607969831;FOSL2:-0.0426056428274;XBP1:-0.0433253072246;BACH2:-0.0567380896156;RORA:-0.0579111328258;MEF2{A,B,C,D}:-0.0614874931605;GTF2I:-0.0722469701928;MYFfamily:-0.0810341246924;FOS_FOS{B,L1}_JUN{B,D}:-0.130813566022;FOX{F1,F2,J1}:-0.14085494561;GFI1:-0.148638289801;PDX1:-0.151252560646;ATF6:-0.156580743492;DMAP1_NCOR{1,2}_SMARC:-0.159555381593;PATZ1:-0.164160324413;HNF1A:-0.166181869893;CREB1:-0.170396543425;LMO2:-0.176195241506;NFIX:-0.182138220421;REST:-0.187470334068;AHR_ARNT_ARNT2:-0.18982047013;ZIC1..3:-0.201038280626;ZBTB16:-0.204289555159;CRX:-0.207854293035;NKX2-2,8:-0.236989104676;HNF4A_NR2F1,2:-0.249077530268;UFEwm:-0.266282557848;NKX3-2:-0.280490350562;IRF7:-0.280629019844;ATF4:-0.287401004003;FOXP1:-0.306311807565;ZNF148:-0.31529124443;HLF:-0.31945635154;NANOG{mouse}:-0.324609896988;NR5A1,2:-0.331270476824;POU6F1:-0.343360555189;FOXL1:-0.362820926196;NKX2-1,4:-0.364336474353;ONECUT1,2:-0.369579510271;FOXM1:-0.382361207068;EP300:-0.384594288797;PRRX1,2:-0.406929183339;RFX1:-0.42505487194;JUN:-0.432208922641;ESRRA:-0.441714424303;HSF1,2:-0.443366771091;TBP:-0.449443834705;ELK1,4_GABP{A,B1}:-0.465162968768;OCT4_SOX2{dimer}:-0.473768547094;CEBPA,B_DDIT3:-0.483274249842;HMX1:-0.487300028321;MYBL2:-0.49210776048;RFX2..5_RFXANK_RFXAP:-0.525551437044;GTF2A1,2:-0.532543457598;FOXP3:-0.548059901072;HOX{A5,B5}:-0.591998573675;ZNF384:-0.594929941248;KLF4:-0.608995587796;CDX1,2,4:-0.615223422183;ATF5_CREB3:-0.626421704572;EBF1:-0.630246296261;STAT5{A,B}:-0.638453783136;ALX4:-0.639379458027;BREu{core}:-0.643345642319;MAFB:-0.645709040844;PPARG:-0.661895178914;NR6A1:-0.668161962863;SNAI1..3:-0.679453160087;RREB1:-0.680074346015;HES1:-0.705243367401;NKX3-1:-0.736739821264;RUNX1..3:-0.741112018779;TBX4,5:-0.743274617465;TOPORS:-0.754445048516;ZEB1:-0.768545323689;NFE2L1:-0.777939354499;HOX{A6,A7,B6,B7}:-0.788774832523;AIRE:-0.817479290224;GLI1..3:-0.86040006327;TFCP2:-0.882784228231;MTF1:-0.893848074979;RXRA_VDR{dimer}:-0.93068631635;POU5F1:-0.998640059902;NR1H4:-1.00440485273;DBP:-1.0129761465;NFIL3:-1.15226203899;HOX{A4,D4}:-1.20742182423;ZNF423:-1.23624793468;ESR1:-1.27856648204;NKX6-1,2:-1.30016752483;VSX1,2:-1.44496138797;POU2F1..3:-1.48385090819
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11393-118C7;search_select_hide=table117:FF:11393-118C7
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Endothelial Cells - Lymphatic, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11906
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecapillary
dev stagefetus
sexunknown
agefetal
cell typeendothelial cell, lymphatic
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3676
catalog numberSC2015
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005940
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11906 CAGE DRX008225 DRR009097
Accession ID Hg19

Library idBAMCTSS
CNhs11906 DRZ000522 DRZ001907
Accession ID Hg38

Library idBAMCTSS
CNhs11906 DRZ011872 DRZ013257
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005940
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.GTGGCC sRNA-Seq DRX037065 DRR041431
Accession ID Hg19

Library idBAMCTSS
SRhi10005.GTGGCC DRZ007073


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.021
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.132
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.52
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.114
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.154
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0212
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0342
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.551
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0183
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.168
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0811
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.223
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.524
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.147
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11906

Jaspar motifP-value
MA0002.20.00264
MA0003.10.305
MA0004.10.797
MA0006.10.451
MA0007.10.619
MA0009.10.641
MA0014.10.922
MA0017.10.036
MA0018.20.0222
MA0019.10.0303
MA0024.10.776
MA0025.10.468
MA0027.10.675
MA0028.10.864
MA0029.10.819
MA0030.10.144
MA0031.10.0241
MA0035.20.315
MA0038.10.269
MA0039.20.688
MA0040.10.274
MA0041.10.0814
MA0042.10.176
MA0043.10.0143
MA0046.10.938
MA0047.20.00525
MA0048.10.871
MA0050.10.808
MA0051.10.135
MA0052.10.785
MA0055.10.865
MA0057.10.191
MA0058.10.405
MA0059.10.22
MA0060.10.234
MA0061.10.174
MA0062.20.817
MA0065.20.00188
MA0066.10.0648
MA0067.10.806
MA0068.10.319
MA0069.10.0427
MA0070.10.921
MA0071.10.384
MA0072.10.403
MA0073.10.811
MA0074.10.765
MA0076.10.73
MA0077.14.68116e-8
MA0078.10.012
MA0079.20.671
MA0080.22.16792e-4
MA0081.10.0805
MA0083.10.857
MA0084.10.1
MA0087.10.0359
MA0088.10.637
MA0090.10.104
MA0091.10.453
MA0092.10.596
MA0093.10.697
MA0099.20.527
MA0100.10.677
MA0101.10.0626
MA0102.20.0194
MA0103.10.00734
MA0104.20.162
MA0105.10.0103
MA0106.10.109
MA0107.10.116
MA0108.20.0794
MA0111.10.649
MA0112.24.84369e-4
MA0113.10.853
MA0114.10.0182
MA0115.10.00994
MA0116.19.2125e-5
MA0117.10.37
MA0119.10.799
MA0122.10.266
MA0124.10.435
MA0125.10.974
MA0131.10.0924
MA0135.10.351
MA0136.10.0179
MA0137.20.7
MA0138.20.296
MA0139.10.854
MA0140.10.124
MA0141.10.128
MA0142.10.363
MA0143.10.593
MA0144.10.525
MA0145.10.953
MA0146.10.0333
MA0147.10.135
MA0148.10.00198
MA0149.10.74
MA0150.10.576
MA0152.10.992
MA0153.10.797
MA0154.10.0092
MA0155.10.614
MA0156.13.07113e-4
MA0157.10.0956
MA0159.10.658
MA0160.10.0962
MA0162.10.511
MA0163.11.62069e-4
MA0164.10.221
MA0258.10.019
MA0259.10.395



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11906

Novel motifP-value
10.232
100.0673
1000.728
1010.389
1020.422
1030.807
1040.765
1050.0873
1060.11
1070.412
1080.61
1090.0777
110.0894
1100.88
1110.677
1120.288
1130.856
1140.491
1150.118
1160.00262
1170.628
1180.324
1190.428
120.506
1200.15
1210.44
1220.401
1230.108
1240.0265
1250.503
1260.571
1270.0939
1280.0974
1290.875
130.585
1300.863
1310.303
1320.675
1330.999
1340.985
1350.215
1360.455
1370.656
1380.82
1390.296
140.514
1400.0342
1410.739
1420.0176
1430.324
1440.0908
1450.725
1460.837
1470.26
1480.0108
1490.324
150.214
1500.893
1510.401
1520.458
1530.387
1540.588
1550.22
1560.058
1570.376
1580.978
1590.786
160.0793
1600.298
1610.0134
1620.438
1630.358
1640.494
1650.845
1660.356
1670.104
1680.753
1690.286
170.451
180.0173
190.565
20.453
200.471
210.357
220.296
230.924
240.765
250.217
260.00897
270.368
280.905
290.392
30.207
300.632
310.48
320.0226
330.913
340.877
350.381
360.144
370.46
380.994
390.256
40.211
400.629
410.236
420.488
430.0865
440.0211
450.966
460.0648
470.062
480.259
490.11
50.653
500.658
510.365
520.251
530.59
540.335
550.819
560.232
570.571
580.0891
590.0864
60.108
600.0711
610.328
620.0325
630.229
640.0277
650.292
660.579
670.336
680.956
690.294
70.213
700.00288
710.091
720.895
730.622
740.539
750.552
760.864
770.0239
780.383
790.632
80.0861
800.717
810.184
820.327
830.851
840.206
850.118
860.887
870.328
880.228
890.237
90.431
900.339
910.596
920.541
930.845
940.125
950.474
960.413
970.392
980.0577
990.768



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11906


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000049 (human lymphatic endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)

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