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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005152
|DRA_sample_Accession=CAGE@SAMD00005152
|accession_numbers=CAGE;DRX008324;DRR009196;DRZ000621;DRZ002006
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005152
|accession_numbers=CAGE;DRX008324;DRR009196;DRZ000621;DRZ002006;DRZ011971;DRZ013356
|accession_numbers_RNASeq=sRNA-Seq;DRX037086;DRR041452;DRZ007094
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg38.nobarcode.ctss.bed.gz
|id=FF:11389-118C3
|id=FF:11389-118C3
|is_a=EFO:0002091;;FF:0000086
|is_a=EFO:0002091;;FF:0000086
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|library_id=CNhs12003
|library_id=CNhs12003
|library_id_phase_based=2:CNhs12003
|library_id_phase_based=2:CNhs12003
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11389
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GTTTCG.11389
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11389
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GTTTCG.11389
|name=Macrophage - monocyte derived, donor3
|name=Macrophage - monocyte derived, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 92: Line 106:
|top_motifs=SREBF1,2:2.32896586372;TLX2:2.24975398492;EN1,2:1.62732266683;FOXP3:1.44000490437;MTF1:1.34355132117;SPI1:1.19766222683;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19107443868;SPIB:1.08270896144;NANOG{mouse}:0.957096493079;TFCP2:0.934541458675;ESRRA:0.930897951517;ESR1:0.89204775161;ELF1,2,4:0.877869873672;TFAP4:0.854038675864;ETS1,2:0.831048446804;NFE2L2:0.810240309268;PPARG:0.78055113654;IRF1,2:0.779246205385;NFIL3:0.776147640967;IRF7:0.753206573213;MYOD1:0.728833219847;RXRA_VDR{dimer}:0.725278438477;DMAP1_NCOR{1,2}_SMARC:0.666675590083;IKZF2:0.663020551629;GLI1..3:0.616323788597;NR6A1:0.593891466047;PAX8:0.56718725746;HLF:0.548331619794;EBF1:0.495332230792;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.488582888671;AR:0.45816968256;SPZ1:0.444447743594;PAX2:0.405902966855;HNF4A_NR2F1,2:0.397657993885;EP300:0.375988160098;NKX3-2:0.35362230892;FOXD3:0.347255077039;HES1:0.331231773729;HMX1:0.284574395277;NKX2-2,8:0.274753058889;XCPE1{core}:0.255329056865;RUNX1..3:0.254591961767;STAT2,4,6:0.23795769523;VSX1,2:0.232111836225;FOSL2:0.216458905201;ZBTB16:0.210486315658;OCT4_SOX2{dimer}:0.209050908788;PAX6:0.185736668283;PRDM1:0.139724444548;PAX5:0.132992672019;TGIF1:0.0955175544574;TAL1_TCF{3,4,12}:0.0856257642476;TBP:0.0812688537738;NR1H4:0.077297040487;MYB:0.058923223821;SP1:0.0580124287011;POU1F1:0.0259835802251;POU5F1:0.0231859810053;NFY{A,B,C}:0.00746710071004;ARID5B:-0.0023146101077;E2F1..5:-0.00728032973677;NFE2:-0.0187057450076;KLF4:-0.0271381381949;GZF1:-0.0486595894582;ZNF143:-0.0707976136834;NFKB1_REL_RELA:-0.0719027457969;FOX{F1,F2,J1}:-0.101419574118;MYFfamily:-0.114787243965;RFX2..5_RFXANK_RFXAP:-0.120267436637;NKX2-3_NKX2-5:-0.125125693584;CEBPA,B_DDIT3:-0.127659437975;TOPORS:-0.137290588423;FOXO1,3,4:-0.140188620708;STAT1,3:-0.168197820135;GATA4:-0.173089137016;ZFP161:-0.179781828989;NRF1:-0.191255446378;FOXN1:-0.196684254764;PRRX1,2:-0.200971433461;NHLH1,2:-0.211002323666;YY1:-0.211066661798;BACH2:-0.223837236982;HBP1_HMGB_SSRP1_UBTF:-0.255112991635;SMAD1..7,9:-0.256788642539;GATA6:-0.258329981246;FOS_FOS{B,L1}_JUN{B,D}:-0.261519788072;PAX1,9:-0.263042366467;FOXP1:-0.271972122522;EGR1..3:-0.279160526195;ATF4:-0.286649392907;REST:-0.299349619405;ELK1,4_GABP{A,B1}:-0.305430806249;ALX4:-0.308911336252;NFE2L1:-0.327239617874;STAT5{A,B}:-0.327301242062;ZNF148:-0.33178606382;POU3F1..4:-0.357791252728;TFDP1:-0.383027185616;CDX1,2,4:-0.385503081593;PAX3,7:-0.399641542927;CREB1:-0.399985524232;UFEwm:-0.40550418204;HAND1,2:-0.414100468902;FOXA2:-0.416665507374;HIC1:-0.436570460933;HNF1A:-0.439648986418;NR5A1,2:-0.45930589454;NFIX:-0.475547523372;ZEB1:-0.481256214249;CRX:-0.484197303621;HSF1,2:-0.504998933324;NKX6-1,2:-0.509878532802;TFAP2{A,C}:-0.519380865405;SOX{8,9,10}:-0.525412913703;IKZF1:-0.527370730926;LMO2:-0.536432233342;LHX3,4:-0.557947902879;bHLH_family:-0.573845821488;CUX2:-0.580260272979;NR3C1:-0.58262785485;ATF5_CREB3:-0.583255804318;ALX1:-0.598253919436;PDX1:-0.607503877599;TFAP2B:-0.608054307497;ZNF423:-0.629761377599;PITX1..3:-0.634308522971;MAFB:-0.641910823115;HMGA1,2:-0.642827863105;ATF2:-0.666538388148;ZBTB6:-0.673240983056;RXR{A,B,G}:-0.674037147586;HIF1A:-0.68388541708;RORA:-0.694636402707;GFI1:-0.69866523462;HOX{A5,B5}:-0.712626791125;ONECUT1,2:-0.712648074261;TEF:-0.713450846256;RREB1:-0.732194376309;GTF2I:-0.744102580637;MAZ:-0.749411161241;MEF2{A,B,C,D}:-0.751306654592;TLX1..3_NFIC{dimer}:-0.752414825402;PAX4:-0.770729945613;FOX{D1,D2}:-0.773976951102;GFI1B:-0.774501532538;JUN:-0.811568898822;SNAI1..3:-0.822024000682;MYBL2:-0.840646771801;SRF:-0.842542607999;MTE{core}:-0.846152646773;GCM1,2:-0.854784653524;HOX{A6,A7,B6,B7}:-0.864916528124;GTF2A1,2:-0.876681570719;ADNP_IRX_SIX_ZHX:-0.877037778688;NANOG:-0.912214539538;T:-0.942707277536;ZNF238:-0.95254476181;NFATC1..3:-0.960887920453;BREu{core}:-0.964559406402;POU6F1:-1.01783915969;PATZ1:-1.02013930375;MED-1{core}:-1.03622206462;TP53:-1.03961911913;SOX2:-1.0462857249;POU2F1..3:-1.05400518657;TEAD1:-1.05481290707;ATF6:-1.08695736647;MZF1:-1.10294922165;SOX17:-1.10511314641;HOXA9_MEIS1:-1.11305368801;HOX{A4,D4}:-1.12128464694;DBP:-1.13083289517;NKX3-1:-1.13833841832;XBP1:-1.14056745484;ZIC1..3:-1.14183811248;FOX{I1,J2}:-1.1672214664;TBX4,5:-1.25926721528;RFX1:-1.31541120004;CDC5L:-1.33081197807;FOXQ1:-1.33811558424;SOX5:-1.36719937784;BPTF:-1.37545800601;EVI1:-1.44586229744;AHR_ARNT_ARNT2:-1.4620458321;AIRE:-1.51771685777;FOXM1:-1.56410471173;PBX1:-1.65129026153;LEF1_TCF7_TCF7L1,2:-1.74431749823;ZNF384:-1.91891566852;RBPJ:-1.96324874322;FOXL1:-2.14609333576;NKX2-1,4:-2.68811297328
|top_motifs=SREBF1,2:2.32896586372;TLX2:2.24975398492;EN1,2:1.62732266683;FOXP3:1.44000490437;MTF1:1.34355132117;SPI1:1.19766222683;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19107443868;SPIB:1.08270896144;NANOG{mouse}:0.957096493079;TFCP2:0.934541458675;ESRRA:0.930897951517;ESR1:0.89204775161;ELF1,2,4:0.877869873672;TFAP4:0.854038675864;ETS1,2:0.831048446804;NFE2L2:0.810240309268;PPARG:0.78055113654;IRF1,2:0.779246205385;NFIL3:0.776147640967;IRF7:0.753206573213;MYOD1:0.728833219847;RXRA_VDR{dimer}:0.725278438477;DMAP1_NCOR{1,2}_SMARC:0.666675590083;IKZF2:0.663020551629;GLI1..3:0.616323788597;NR6A1:0.593891466047;PAX8:0.56718725746;HLF:0.548331619794;EBF1:0.495332230792;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.488582888671;AR:0.45816968256;SPZ1:0.444447743594;PAX2:0.405902966855;HNF4A_NR2F1,2:0.397657993885;EP300:0.375988160098;NKX3-2:0.35362230892;FOXD3:0.347255077039;HES1:0.331231773729;HMX1:0.284574395277;NKX2-2,8:0.274753058889;XCPE1{core}:0.255329056865;RUNX1..3:0.254591961767;STAT2,4,6:0.23795769523;VSX1,2:0.232111836225;FOSL2:0.216458905201;ZBTB16:0.210486315658;OCT4_SOX2{dimer}:0.209050908788;PAX6:0.185736668283;PRDM1:0.139724444548;PAX5:0.132992672019;TGIF1:0.0955175544574;TAL1_TCF{3,4,12}:0.0856257642476;TBP:0.0812688537738;NR1H4:0.077297040487;MYB:0.058923223821;SP1:0.0580124287011;POU1F1:0.0259835802251;POU5F1:0.0231859810053;NFY{A,B,C}:0.00746710071004;ARID5B:-0.0023146101077;E2F1..5:-0.00728032973677;NFE2:-0.0187057450076;KLF4:-0.0271381381949;GZF1:-0.0486595894582;ZNF143:-0.0707976136834;NFKB1_REL_RELA:-0.0719027457969;FOX{F1,F2,J1}:-0.101419574118;MYFfamily:-0.114787243965;RFX2..5_RFXANK_RFXAP:-0.120267436637;NKX2-3_NKX2-5:-0.125125693584;CEBPA,B_DDIT3:-0.127659437975;TOPORS:-0.137290588423;FOXO1,3,4:-0.140188620708;STAT1,3:-0.168197820135;GATA4:-0.173089137016;ZFP161:-0.179781828989;NRF1:-0.191255446378;FOXN1:-0.196684254764;PRRX1,2:-0.200971433461;NHLH1,2:-0.211002323666;YY1:-0.211066661798;BACH2:-0.223837236982;HBP1_HMGB_SSRP1_UBTF:-0.255112991635;SMAD1..7,9:-0.256788642539;GATA6:-0.258329981246;FOS_FOS{B,L1}_JUN{B,D}:-0.261519788072;PAX1,9:-0.263042366467;FOXP1:-0.271972122522;EGR1..3:-0.279160526195;ATF4:-0.286649392907;REST:-0.299349619405;ELK1,4_GABP{A,B1}:-0.305430806249;ALX4:-0.308911336252;NFE2L1:-0.327239617874;STAT5{A,B}:-0.327301242062;ZNF148:-0.33178606382;POU3F1..4:-0.357791252728;TFDP1:-0.383027185616;CDX1,2,4:-0.385503081593;PAX3,7:-0.399641542927;CREB1:-0.399985524232;UFEwm:-0.40550418204;HAND1,2:-0.414100468902;FOXA2:-0.416665507374;HIC1:-0.436570460933;HNF1A:-0.439648986418;NR5A1,2:-0.45930589454;NFIX:-0.475547523372;ZEB1:-0.481256214249;CRX:-0.484197303621;HSF1,2:-0.504998933324;NKX6-1,2:-0.509878532802;TFAP2{A,C}:-0.519380865405;SOX{8,9,10}:-0.525412913703;IKZF1:-0.527370730926;LMO2:-0.536432233342;LHX3,4:-0.557947902879;bHLH_family:-0.573845821488;CUX2:-0.580260272979;NR3C1:-0.58262785485;ATF5_CREB3:-0.583255804318;ALX1:-0.598253919436;PDX1:-0.607503877599;TFAP2B:-0.608054307497;ZNF423:-0.629761377599;PITX1..3:-0.634308522971;MAFB:-0.641910823115;HMGA1,2:-0.642827863105;ATF2:-0.666538388148;ZBTB6:-0.673240983056;RXR{A,B,G}:-0.674037147586;HIF1A:-0.68388541708;RORA:-0.694636402707;GFI1:-0.69866523462;HOX{A5,B5}:-0.712626791125;ONECUT1,2:-0.712648074261;TEF:-0.713450846256;RREB1:-0.732194376309;GTF2I:-0.744102580637;MAZ:-0.749411161241;MEF2{A,B,C,D}:-0.751306654592;TLX1..3_NFIC{dimer}:-0.752414825402;PAX4:-0.770729945613;FOX{D1,D2}:-0.773976951102;GFI1B:-0.774501532538;JUN:-0.811568898822;SNAI1..3:-0.822024000682;MYBL2:-0.840646771801;SRF:-0.842542607999;MTE{core}:-0.846152646773;GCM1,2:-0.854784653524;HOX{A6,A7,B6,B7}:-0.864916528124;GTF2A1,2:-0.876681570719;ADNP_IRX_SIX_ZHX:-0.877037778688;NANOG:-0.912214539538;T:-0.942707277536;ZNF238:-0.95254476181;NFATC1..3:-0.960887920453;BREu{core}:-0.964559406402;POU6F1:-1.01783915969;PATZ1:-1.02013930375;MED-1{core}:-1.03622206462;TP53:-1.03961911913;SOX2:-1.0462857249;POU2F1..3:-1.05400518657;TEAD1:-1.05481290707;ATF6:-1.08695736647;MZF1:-1.10294922165;SOX17:-1.10511314641;HOXA9_MEIS1:-1.11305368801;HOX{A4,D4}:-1.12128464694;DBP:-1.13083289517;NKX3-1:-1.13833841832;XBP1:-1.14056745484;ZIC1..3:-1.14183811248;FOX{I1,J2}:-1.1672214664;TBX4,5:-1.25926721528;RFX1:-1.31541120004;CDC5L:-1.33081197807;FOXQ1:-1.33811558424;SOX5:-1.36719937784;BPTF:-1.37545800601;EVI1:-1.44586229744;AHR_ARNT_ARNT2:-1.4620458321;AIRE:-1.51771685777;FOXM1:-1.56410471173;PBX1:-1.65129026153;LEF1_TCF7_TCF7L1,2:-1.74431749823;ZNF384:-1.91891566852;RBPJ:-1.96324874322;FOXL1:-2.14609333576;NKX2-1,4:-2.68811297328
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11389-118C3;search_select_hide=table117:FF:11389-118C3
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Macrophage - monocyte derived, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12003
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage57 years old adult
sexfemale
age57
cell typemacrophage
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberMac724
catalog number3H100-80-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005152
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12003 CAGE DRX008324 DRR009196
Accession ID Hg19

Library idBAMCTSS
CNhs12003 DRZ000621 DRZ002006
Accession ID Hg38

Library idBAMCTSS
CNhs12003 DRZ011971 DRZ013356
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005152
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GTTTCG sRNA-Seq DRX037086 DRR041452
Accession ID Hg19

Library idBAMCTSS
SRhi10006.GTTTCG DRZ007094


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0579
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0663
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.181
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0602
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.749
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0274
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0.76
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0196
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-8.163487e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.136
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.737
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0602
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.162
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.266
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.113
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.584
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.31
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0687
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0202
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.14
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.743
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.976
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.489
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.396
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0.113
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.255
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.113
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.421
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.786
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12003

Jaspar motifP-value
MA0002.20.00129
MA0003.10.105
MA0004.10.321
MA0006.10.328
MA0007.10.027
MA0009.10.674
MA0014.10.0631
MA0017.12.64892e-4
MA0018.20.00324
MA0019.10.453
MA0024.10.247
MA0025.10.992
MA0027.10.828
MA0028.10.906
MA0029.10.882
MA0030.10.00235
MA0031.10.0417
MA0035.20.655
MA0038.10.445
MA0039.20.0163
MA0040.10.88
MA0041.10.288
MA0042.10.562
MA0043.10.0488
MA0046.10.463
MA0047.20.62
MA0048.10.319
MA0050.13.85709e-4
MA0051.10.0213
MA0052.10.263
MA0055.10.961
MA0057.10.311
MA0058.10.0307
MA0059.10.167
MA0060.10.0165
MA0061.10.209
MA0062.20.00302
MA0065.20.00292
MA0066.10.163
MA0067.10.483
MA0068.10.00443
MA0069.10.19
MA0070.10.56
MA0071.10.0982
MA0072.10.778
MA0073.10.138
MA0074.10.0907
MA0076.10.957
MA0077.10.669
MA0078.10.617
MA0079.20.0579
MA0080.29.78276e-17
MA0081.14.45831e-4
MA0083.10.0318
MA0084.10.0253
MA0087.10.681
MA0088.10.144
MA0090.10.0142
MA0091.10.132
MA0092.10.171
MA0093.10.194
MA0099.20.1
MA0100.10.711
MA0101.10.774
MA0102.20.217
MA0103.10.709
MA0104.20.663
MA0105.10.14
MA0106.10.502
MA0107.10.581
MA0108.20.00646
MA0111.10.23
MA0112.27.7328e-4
MA0113.10.356
MA0114.10.00365
MA0115.10.256
MA0116.10.00167
MA0117.10.824
MA0119.10.753
MA0122.10.46
MA0124.10.312
MA0125.10.614
MA0131.10.253
MA0135.10.0614
MA0136.15.15171e-12
MA0137.20.269
MA0138.20.72
MA0139.10.942
MA0140.10.421
MA0141.10.00407
MA0142.10.579
MA0143.10.249
MA0144.10.0483
MA0145.10.0776
MA0146.10.00443
MA0147.10.951
MA0148.10.252
MA0149.10.124
MA0150.10.0611
MA0152.10.143
MA0153.10.00598
MA0154.10.0112
MA0155.10.712
MA0156.12.43781e-7
MA0157.10.318
MA0159.10.0197
MA0160.10.00348
MA0162.10.967
MA0163.10.00916
MA0164.10.775
MA0258.10.0104
MA0259.10.307



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12003

Novel motifP-value
10.114
100.0414
1000.865
1010.28
1020.25
1030.16
1040.491
1050.808
1060.0768
1070.332
1080.759
1090.0057
110.0901
1100.226
1110.0302
1120.111
1130.416
1140.0617
1150.712
1160.514
1170.0415
1180.245
1190.188
120.5
1200.538
1210.594
1220.553
1230.72
1240.631
1250.0604
1260.189
1270.0863
1280.093
1290.541
130.0238
1300.802
1310.695
1320.63
1330.925
1340.561
1350.162
1360.159
1370.0169
1380.288
1390.144
140.387
1400.401
1410.516
1420.373
1430.469
1440.376
1450.681
1460.977
1470.135
1480.0633
1490.405
150.137
1500.42
1510.724
1520.0227
1530.217
1540.979
1550.142
1560.421
1570.785
1580.995
1590.367
160.127
1600.542
1610.666
1620.781
1630.679
1640.137
1650.386
1660.599
1670.565
1680.7
1690.00491
170.166
180.31
190.15
20.809
200.867
210.141
220.0991
230.368
240.0166
250.575
260.0159
270.121
280.557
290.127
30.0545
300.831
310.737
320.729
330.382
340.178
350.917
360.386
370.147
380.0744
390.973
40.689
400.117
410.172
420.772
430.107
440.0034
450.722
460.187
470.394
480.24
490.311
50.761
500.922
510.567
520.283
530.353
540.373
550.164
560.701
570.9
580.162
590.0751
60.105
600.119
610.217
620.0935
630.537
640.252
650.0562
660.946
670.292
680.993
690.466
70.275
700.086
710.0564
720.332
730.00288
740.706
750.0327
760.616
770.178
780.0669
790.199
80.12
800.378
810.258
820.394
830.95
840.476
850.0249
860.0951
870.00767
880.262
890.113
90.16
900.115
910.724
920.247
930.89
940.249
950.0272
960.247
970.955
980.501
990.886



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12003


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000086 (human macrophage sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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