FF:11305-117B9: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{f5samples
|id=FF:11305-117B9
|name=CD14+ Monocytes, donor2
|sample_id=11305
|rna_tube_id=117B9
|rna_box=117
|rna_position=B9
|sample_cell_lot=N/A
|sample_cell_catalo...") |
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005394 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005394 | |||
|accession_numbers=CAGE;DRX008127;DRR008999;DRZ000424;DRZ001809;DRZ011774;DRZ013159 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037117;DRR041483;DRZ007125 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397 | |||
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000024 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.91!815.61!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.61!405.50!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.42!260.71!ZNF385A;;chr14:35873947..35873965,-!p1@NFKBIA!2.22!9737.03!NFKBIA;;chr11:47399947..47399961,-!p3@SPI1!2.22!164.85!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.19!153.82!IRF8;;chr3:101546827..101546847,+!p2@NFKBIZ!2.16!199.34!NFKBIZ;;chr2:145271342..145271377,-!p5@ZEB2!2.14!136.77!ZEB2;;chr2:145277640..145277771,-!p1@ZEB2!2.13!1656.70!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!2.11!170.06!THAP2;;chr20:39317868..39317884,-!p1@MAFB!2.08!1332.82!MAFB;;chr11:47400062..47400077,-!p2@SPI1!2.01!102.48!SPI1;;chr19:45971246..45971265,+!p1@FOSB!1.98!1638.65!FOSB;;chr6:106534192..106534224,+!p1@PRDM1!1.93!228.82!PRDM1;;chr14:35872453..35872485,-!p2@NFKBIA!1.93!198.34!NFKBIA;;chr1:25256756..25256774,-!p1@RUNX3!1.91!145.19!RUNX3;;chr11:47399996..47400014,-!p4@SPI1!1.91!79.82!SPI1;;chr8:123793988..123794016,+!p1@ZHX2!1.89!131.16!ZHX2;;chr2:145275162..145275202,-!p2@ZEB2!1.86!397.08!ZEB2;;chr7:17338324..17338341,+!p3@AHR!1.86!229.02!AHR;;chr3:101568349..101568365,+!p1@NFKBIZ!1.84!3280.31!NFKBIZ;;chr4:103422499..103422632,+!p1@NFKB1!1.83!1314.17!NFKB1;;chr2:157189180..157189290,-!p1@NR4A2!1.80!308.04!NR4A2;;chr6:12011943..12012015,+!p2@HIVEP1!1.79!187.51!HIVEP1;;chr12:72056749..72056767,+!p6@THAP2!1.79!67.18!THAP2;;chr14:35872962..35873025,-!p3@NFKBIA!1.78!142.99!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!1.76!302.82!MXD1;;chr2:61108695..61108753,+!p1@REL!1.75!363.79!REL;;chr2:192015701..192015743,-!p1@STAT4!1.74!72.80!STAT4;;chr12:72056773..72056796,+!p3@THAP2!1.74!69.79!THAP2;;chr14:35874077..35874091,-!p8@NFKBIA!1.74!54.15!NFKBIA;;chr3:39195075..39195088,-!p1@CSRNP1!1.73!314.85!CSRNP1;;chr19:45252008..45252024,+!p2@BCL3!1.73!165.85!BCL3;;chr6:106534230..106534254,+!p2@PRDM1!1.73!128.95!PRDM1;;chrX:153305787..153305807,-!p3@MECP2!1.73!53.14!MECP2;;chr10:104155480..104155534,+!p2@NFKB2!1.72!320.47!NFKB2;;chr7:50344289..50344323,+!p1@IKZF1!1.72!51.94!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.72!51.74!SPI1;;chr10:3827371..3827386,-!p2@KLF6!1.71!403.90!KLF6;;chr8:81397876..81397898,+!p5@ZBTB10!1.71!58.36!ZBTB10;;chr12:54778351..54778378,-!p6@ZNF385A!1.69!48.53!ZNF385A;;chr10:104154246..104154347,+!p3@NFKB2!1.68!272.14!NFKB2;;chr14:35872926..35872951,-!p4@NFKBIA!1.68!65.78!NFKBIA;;chr19:36391434..36391450,-!p1@NFKBID!1.66!86.23!NFKBID;;chr6:15246200..15246214,+!p2@JARID2!1.64!115.11!JARID2;;chr7:115670804..115670825,-!p1@TFEC!1.64!43.12!TFEC;;chr3:39195037..39195069,-!p2@CSRNP1!1.63!246.67!CSRNP1;;chr8:123794038..123794056,+!p5@ZHX2!1.61!39.91!ZHX2;;chr9:102584262..102584276,+!p1@NR4A3!1.60!84.63!NR4A3;;chr5:131826457..131826514,-!p1@IRF1!1.59!1418.65!IRF1;;chr2:185463247..185463263,+!p1@ZNF804A!1.59!65.18!ZNF804A;;chr8:81397820..81397836,+!p2@ZBTB10!1.59!47.13!ZBTB10;;chr16:31885093..31885165,+!p1@ZNF267!1.58!539.87!ZNF267;;chr7:149470641..149470694,-!p1@ZNF467!1.58!161.44!ZNF467;;chr4:83822199..83822239,+!p2@THAP9!1.57!42.92!THAP9;;chr8:81397846..81397860,+!p3@ZBTB10!1.56!44.12!ZBTB10;;chr7:50343634..50343717,+!p2@IKZF1!1.56!35.50!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.56!34.89!PLEK;;chr6:144385698..144385742,-!p2@PLAGL1!1.55!41.51!PLAGL1;;chrY:2803415..2803468,+!p1@ZFY!1.54!33.49!ZFY;;chr11:47400045..47400060,-!p6@SPI1!1.53!33.09!SPI1;;chr9:110252035..110252057,-!p1@KLF4!1.52!492.54!KLF4;;chr9:102584241..102584261,+!p4@NR4A3!1.52!49.13!NR4A3;;chr14:35872494..35872511,-!p5@NFKBIA!1.52!42.31!NFKBIA;;chr10:104154415..104154434,+!p5@NFKB2!1.52!32.49!NFKB2;;chr1:151030536..151030549,+!p8@MLLT11!1.52!32.09!MLLT11;;chr19:45250948..45250998,+!p3@BCL3!1.50!75.40!BCL3;;chr9:102584128..102584144,+!p3@NR4A3!1.50!57.36!NR4A3;;chr14:35872542..35872553,-!p10@NFKBIA!1.48!29.48!NFKBIA;;chr9:129567282..129567353,+!p1@ZBTB43!1.46!349.35!ZBTB43;;chr5:142782823..142782854,-!p3@NR3C1!1.45!38.10!NR3C1;;chr6:15246261..15246312,+!p1@JARID2!1.43!599.03!JARID2;;chr2:61108808..61108821,+!p3@REL!1.43!32.89!REL;;chr1:25256439..25256476,-!p3@RUNX3!1.43!25.67!RUNX3;;chr11:47399920..47399931,-!p7@SPI1!1.42!25.47!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!1.41!237.24!NFKBIE;;chr10:51572408..51572454,+!p3@NCOA4!1.41!139.98!NCOA4;;chr16:69600058..69600065,+!p9@NFAT5!1.41!24.67!NFAT5;;chr9:102584159..102584174,+!p2@NR4A3!1.40!43.32!NR4A3;;chr14:35872414..35872425,-!p7@NFKBIA!1.40!27.07!NFKBIA;;chr2:97202480..97202499,+!p1@ARID5A!1.39!228.22!ARID5A;;chr2:28618532..28618610,+!p4@FOSL2!1.39!39.51!FOSL2;;chr17:38497662..38497713,+!p4@RARA!1.38!26.67!RARA;;chrY:21906594..21906622,-!p1@KDM5D!1.38!23.26!KDM5D;;chr2:145271880..145271915,-!p42@ZEB2!1.38!23.06!ZEB2;;chr6:391743..391759,+!p1@IRF4!1.38!23.06!IRF4;;chr17:45810594..45810608,+!p1@TBX21!1.38!22.86!TBX21;;chr7:17338266..17338282,+!p1@AHR!1.37!233.63!AHR;;chr9:110250697..110250738,-!p2@KLF4!1.37!26.07!KLF4;;chr1:157108130..157108173,-!p1@ETV3!1.36!152.81!ETV3;;chrX:129244454..129244488,-!p1@ELF4!1.36!152.41!ELF4;;chr9:117150254..117150271,-!p1@AKNA!1.36!59.16!AKNA;;chr13:41593392..41593403,-!p7@ELF1!1.36!22.06!ELF1;;chr1:212782094..212782109,+!p1@ATF3!1.35!558.12!ATF3;;chr3:150126904..150126958,+!p7@TSC22D2!1.35!37.30!TSC22D2;;chr20:50159198..50159299,-!p1@NFATC2!1.35!30.68!NFATC2;;chr3:39195139..39195150,-!p3@CSRNP1!1.35!27.27!CSRNP1;;chr14:75745523..75745537,+!p1@FOS!1.34!2391.09!FOS;;chr10:104155659..104155676,+!p4@NFKB2!1.34!25.67!NFKB2;;chr19:45251395..45251432,+!p8@BCL3!1.34!21.06!BCL3;;chr2:145272041..145272072,-!p48@ZEB2!1.34!20.66!ZEB2;;chr6:143266297..143266356,-!p1@HIVEP2!1.33!95.66!HIVEP2;;chr22:38597987..38598021,+!p2@MAFF!1.32!117.72!MAFF;;chr3:187463179..187463201,-!p2@BCL6!1.32!80.62!BCL6;;chr15:57211634..57211657,+!p5@TCF12!1.32!30.28!TCF12;;chr21:34442439..34442455,+!p1@OLIG1!1.32!19.85!OLIG1;;chr19:45504688..45504782,+!p1@RELB!1.31!115.71!RELB;;chr14:62162285..62162296,+!p3@HIF1A!1.31!98.67!HIF1A;;chr2:208394817..208394834,+!p3@CREB1!1.31!76.41!CREB1;;chrX:106960180..106960197,-!p2@TSC22D3!1.31!72.40!TSC22D3;;chr21:36260295..36260310,-!p3@RUNX1!1.31!30.88!RUNX1;;chr10:8096631..8096660,+!p1@GATA3!1.31!23.26!GATA3;;chr2:145276113..145276149,-!p28@ZEB2!1.31!19.25!ZEB2;;chr10:3827389..3827408,-!p1@KLF6!1.30!1406.82!KLF6;;chr3:5020939..5020952,+!p2@BHLHE40!1.30!58.96!BHLHE40;;chr2:145277882..145277967,-!p3@ZEB2!1.30!32.49!ZEB2;;chr17:38498594..38498661,+!p2@RARA!1.29!61.37!RARA;;chr7:128577972..128578047,+!p1@IRF5!1.29!29.28!IRF5;;chr6:106546808..106546833,+!p3@PRDM1!1.28!22.86!PRDM1;;chr12:72056897..72056908,+!p12@THAP2!1.28!18.25!THAP2;;chr19:54041669..54041697,+!p2@ZNF331!1.28!17.85!ZNF331;;chr19:54058073..54058088,+!p1@ZNF331!1.28!17.85!ZNF331;;chr2:192015677..192015691,-!p3@STAT4!1.28!17.85!STAT4;;chr1:156470515..156470542,-!p2@MEF2D!1.27!91.25!MEF2D;;chr18:3448455..3448480,+!p5@TGIF1!1.26!31.08!TGIF1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.25!203.35!ZC3H12A;;chr21:36421535..36421610,-!p2@RUNX1!1.25!58.96!RUNX1;;chr2:8822176..8822196,+!p1@ID2!1.24!2248.50!ID2;;chr8:22550982..22550999,-!p1@EGR3!1.24!45.72!EGR3;;chr9:94186085..94186096,-!p3@NFIL3!1.24!26.87!NFIL3;;chr2:145277589..145277612,-!p12@ZEB2!1.24!16.24!ZEB2;;chr12:11802753..11802834,+!p2@ETV6!1.23!76.81!ETV6;;chr7:104654718..104654741,+!p3@MLL5!1.23!23.46!MLL5;;chr14:75746722..75746777,+!p2@FOS!1.23!20.66!FOS;;chr2:157189617..157189667,-!p4@NR4A2!1.23!16.04!NR4A2;;chr12:52445218..52445237,+!p1@NR4A1!1.22!192.32!NR4A1;;chr8:102218439..102218455,-!p3@ZNF706!1.22!15.64!ZNF706;;chr14:62162258..62162269,+!p2@HIF1A!1.21!145.39!HIF1A;;chr6:12012170..12012245,+!p1@HIVEP1!1.21!76.41!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.21!15.24!NFKB1;;chr5:142782862..142782881,-!p11@NR3C1!1.21!15.04!NR3C1;;chr15:60884706..60884743,-!p1@RORA!1.19!74.20!RORA;;chr14:64971288..64971316,-!p2@ZBTB25!1.19!44.32!ZBTB25;;chr2:231090433..231090469,+!p1@SP140!1.19!14.64!SP140;;chr3:63953435..63953499,+!p1@ATXN7!1.19!14.64!ATXN7;;chr9:117160738..117160782,-!p2@AKNA!1.18!57.96!AKNA;;chr19:42636586..42636607,-!p1@POU2F2!1.18!38.91!POU2F2;;chr3:101575889..101575903,+!p3@NFKBIZ!1.18!14.04!NFKBIZ;;chr12:57914286..57914304,-!p1@DDIT3!1.17!491.94!DDIT3;;chr9:94186101..94186122,-!p1@NFIL3!1.17!189.51!NFIL3;;chr19:33793430..33793447,-!p1@CEBPA!1.17!57.96!CEBPA;;chr21:40177892..40177903,+!p2@ETS2!1.17!55.55!ETS2;;chr15:57211660..57211687,+!p6@TCF12!1.17!22.46!TCF12;;chr2:145277632..145277638,-!p17@ZEB2!1.17!13.64!ZEB2;;chr4:106068026..106068084,+!p1@TET2!1.16!121.13!TET2;;chr18:77155922..77155939,+!p1@NFATC1!1.16!36.70!NFATC1;;chr2:61108771..61108789,+!p4@REL!1.16!20.46!REL;;chr7:106809470..106809481,+!p2@HBP1!1.16!18.85!HBP1;;chr8:53373491..53373506,-!p4@ST18!1.16!13.44!ST18;;chr19:16435625..16435682,+!p1@KLF2!1.15!419.54!KLF2;;chr4:38665769..38665801,+!p2@KLF3!1.15!117.92!KLF3;;chr2:208031542..208031595,-!p2@KLF7!1.15!92.25!KLF7;;chr4:83822246..83822277,+!p5@THAP9!1.15!13.24!THAP9;;chr3:5021113..5021180,+!p1@BHLHE40!1.14!878.59!BHLHE40;;chr17:38498402..38498445,+!p3@RARA!1.14!45.92!RARA;;chr20:56195474..56195506,-!p1@ZBP1!1.14!12.83!ZBP1;;chr2:61108878..61108891,+!p5@REL!1.14!12.83!REL;;chr10:8096772..8096787,+!p2@GATA3!1.13!14.84!GATA3;;chr2:97203110..97203159,+!p4@ARID5A!1.13!12.43!ARID5A;;chr7:104654690..104654704,+!p2@MLL5!1.12!24.47!MLL5;;chr2:145274981..145274994,-!p9@ZEB2!1.12!17.65!ZEB2;;chrX:153305741..153305753,-!p4@MECP2!1.12!12.03!MECP2;;chr10:114709999..114710031,+!p1@TCF7L2!1.11!281.56!TCF7L2;;chr4:140098339..140098392,-!p1@ELF2!1.11!97.26!ELF2;;chr6:91006518..91006570,-!p1@BACH2!1.11!27.68!BACH2;;chr10:3824332..3824425,-!p4@KLF6!1.11!19.05!KLF6;;chr19:12902289..12902307,+!p1@JUNB!1.10!2656.81!JUNB;;chr12:96588219..96588263,+!p2@ELK3!1.10!82.82!ELK3;;chr13:41593425..41593480,-!p1@ELF1!1.10!74.60!ELF1;;chr2:60780607..60780624,-!p2@BCL11A!1.10!35.70!BCL11A;;chr3:187463248..187463264,-!p1@BCL6!1.09!243.86!BCL6;;chr1:59249688..59249703,-!p3@JUN!1.09!68.59!JUN;;chr3:23986824..23986848,+!p2@NR1D2!1.09!63.37!NR1D2;;chr10:35416142..35416169,+!p3@CREM!1.09!29.88!CREM;;chr20:48807456..48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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002397;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 67: | Line 43: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11305-117B9 | |||
|is_a=EFO:0002091;;FF:0000024 | |||
|is_obsolete= | |||
|library_id=CNhs11954 | |||
|library_id_phase_based=2:CNhs11954 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11305 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.CTTGTA.11305 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11305 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.CTTGTA.11305 | |||
|name=CD14+ Monocytes, donor2 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11954,LSID836,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10008,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.331841044351357,0.0231466048229689,0,0.343067067616665,0.146465690858417,0.182749037530279,0.0793782434714987,0.1035382099117,0.968803515302196,0,0,0,0,0,0,0,0,0,0.0793782434714987,0.255797633122121,0.0793782434714987,0,-0.00685731949001103,0,0,0.0396891217357494,0.266156323774105,0,0.349959490395233,0,0.305845445509854,0.781894099450758,0,0,0,0.415700279352964,0,0,0,0.80717635581456,0,0.204563101265448,0,0,0.0049106430650053,0.5059620173793,0,0,0,0.127898816561061,0,0.204563101265448,0,0.015474100622915,0,0,0,0.204563101265448,0,0,0,0.204628358819431,0,0.343067067616665,0.204277092848939,0,0.779135345130285,0,0,0,0,0.716957191770421,0,0,0,1.22121770193126,0,0,0.820545902295822,0,0,0,0,0.141970672368473,0,0.146465690858417,0.0396891217357494,0,0,-0.35869052606925,0.150810360031018,0,0.000455793401022392,0.189924622009553,0.378175673818024,0.0396891217357494,0,0.66979152604116,0,0.601879426839838,0.694585072738188,0,0,0.0793782434714987,0,0,0.61320987065518,0.146465690858417,0,0,0,0,0,0.146465690858417,0.0254425875766036,0,0,0,0.0315252226385994,0.301620720062036,0,0,0.0793782434714987,0.175765787971049,0.0793782434714987,0,0.299594922114646,0,0,0 | |||
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| |||
|rna_box=117 | |||
|rna_catalog_number=3H100-30-10 | |||
|rna_concentration=1.5 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=Mon726 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=B9 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=117B9 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10008.CTTGTA | |||
|sample_age=57 | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=monocyte | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=3HBiomedical | |||
|sample_description= | |||
|sample_dev_stage=57 years old adult | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=C | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.41287427923216e-246!GO:0043227;membrane-bound organelle;2.62949663485785e-136!GO:0043231;intracellular membrane-bound organelle;5.1017026666545e-136!GO:0043226;organelle;2.28042370569053e-128!GO:0043229;intracellular organelle;1.451422155989e-127!GO:0005737;cytoplasm;4.26431475453605e-125!GO:0044444;cytoplasmic part;8.65751287784496e-77!GO:0044422;organelle part;4.07925750208468e-76!GO:0005515;protein binding;2.04292720728254e-75!GO:0043170;macromolecule metabolic process;1.29066587793988e-74!GO:0044446;intracellular organelle part;1.29066587793988e-74!GO:0044237;cellular metabolic process;2.5028442017156e-74!GO:0044238;primary metabolic process;4.56888542830936e-74!GO:0005634;nucleus;1.52942197927128e-65!GO:0032991;macromolecular complex;4.07922859671534e-58!GO:0003723;RNA binding;1.59717779401635e-55!GO:0044428;nuclear part;3.31638008460869e-54!GO:0019538;protein metabolic process;5.55891657727426e-49!GO:0043283;biopolymer metabolic process;9.73189968488613e-49!GO:0030529;ribonucleoprotein complex;1.34031320948109e-46!GO:0044267;cellular protein metabolic process;1.03871835906884e-45!GO:0044260;cellular macromolecule metabolic process;2.0799350754667e-45!GO:0033036;macromolecule localization;7.96667670134446e-43!GO:0043233;organelle lumen;1.61948616045595e-42!GO:0031974;membrane-enclosed lumen;1.61948616045595e-42!GO:0015031;protein transport;1.9410407564564e-41!GO:0045184;establishment of protein localization;9.47008509803447e-41!GO:0010467;gene expression;1.27792563188103e-40!GO:0008104;protein localization;2.24239867893169e-39!GO:0006412;translation;2.16592066191457e-37!GO:0031981;nuclear lumen;2.30928248413604e-34!GO:0016071;mRNA metabolic process;3.17209035655839e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.38578181379404e-33!GO:0031090;organelle membrane;9.31020699692798e-33!GO:0006915;apoptosis;1.98739471545774e-31!GO:0012501;programmed cell death;2.0189271252874e-31!GO:0016043;cellular component organization and biogenesis;2.13050468440953e-31!GO:0006396;RNA processing;2.55303608223222e-31!GO:0005829;cytosol;1.57101530728151e-30!GO:0043234;protein complex;1.74935115612354e-30!GO:0008219;cell death;6.47458393153093e-30!GO:0016265;death;6.47458393153093e-30!GO:0046907;intracellular transport;1.3840277917485e-28!GO:0008380;RNA splicing;1.40699988801528e-28!GO:0009059;macromolecule biosynthetic process;2.50641163424933e-28!GO:0006886;intracellular protein transport;4.90552781487729e-27!GO:0006397;mRNA processing;1.04514735206162e-26!GO:0005739;mitochondrion;2.40928941091613e-26!GO:0009058;biosynthetic process;3.63296002744888e-25!GO:0031967;organelle envelope;3.66286420330344e-25!GO:0031975;envelope;5.69171687928601e-25!GO:0000166;nucleotide binding;2.98072110065033e-24!GO:0005654;nucleoplasm;4.00611670223861e-24!GO:0044249;cellular biosynthetic process;4.30658411666922e-24!GO:0005840;ribosome;1.11069420013704e-23!GO:0043412;biopolymer modification;2.19147019197937e-23!GO:0065003;macromolecular complex assembly;3.31871891413481e-23!GO:0008134;transcription factor binding;2.51092768431312e-22!GO:0003676;nucleic acid binding;6.17968252816535e-22!GO:0051649;establishment of cellular localization;6.17968252816535e-22!GO:0051641;cellular localization;1.39657711368593e-21!GO:0005681;spliceosome;2.73820201749423e-21!GO:0050794;regulation of cellular process;2.76470798847711e-21!GO:0006464;protein modification process;2.78985172588788e-21!GO:0003735;structural constituent of ribosome;4.08471233637832e-21!GO:0016070;RNA metabolic process;5.26570919527405e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.71555323665489e-21!GO:0033279;ribosomal subunit;6.25387617028926e-21!GO:0044451;nucleoplasm part;8.89985704619498e-21!GO:0042981;regulation of apoptosis;8.9662895805114e-21!GO:0043687;post-translational protein modification;1.25455854818305e-20!GO:0043067;regulation of programmed cell death;1.80063296647036e-20!GO:0022607;cellular component assembly;1.98720511921748e-20!GO:0044429;mitochondrial part;7.37978917836227e-20!GO:0006512;ubiquitin cycle;9.2054349694161e-20!GO:0048523;negative regulation of cellular process;1.33264412068429e-18!GO:0006996;organelle organization and biogenesis;2.79832180929084e-18!GO:0044445;cytosolic part;2.96448818621876e-18!GO:0032553;ribonucleotide binding;3.97995282504958e-18!GO:0032555;purine ribonucleotide binding;3.97995282504958e-18!GO:0007243;protein kinase cascade;4.80069987720709e-18!GO:0007242;intracellular signaling cascade;2.0592768313091e-17!GO:0044265;cellular macromolecule catabolic process;2.14584011605706e-17!GO:0050789;regulation of biological process;2.85145965854655e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.8889263933365e-17!GO:0017076;purine nucleotide binding;4.72579126802119e-17!GO:0016192;vesicle-mediated transport;6.7640378165323e-17!GO:0048519;negative regulation of biological process;3.38513403340017e-16!GO:0006793;phosphorus metabolic process;3.78095434756476e-16!GO:0006796;phosphate metabolic process;3.78095434756476e-16!GO:0006259;DNA metabolic process;5.75893468258677e-16!GO:0019941;modification-dependent protein catabolic process;7.14538964876098e-16!GO:0043632;modification-dependent macromolecule catabolic process;7.14538964876098e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.08622476267011e-16!GO:0006511;ubiquitin-dependent protein catabolic process;8.08622476267011e-16!GO:0044257;cellular protein catabolic process;1.06377976481148e-15!GO:0006605;protein targeting;1.61577499868758e-15!GO:0016462;pyrophosphatase activity;2.53592062882267e-15!GO:0006913;nucleocytoplasmic transport;2.62595474147694e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.73661002700158e-15!GO:0017111;nucleoside-triphosphatase activity;3.12559199232025e-15!GO:0005740;mitochondrial envelope;3.12559199232025e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;3.42790332625262e-15!GO:0051169;nuclear transport;6.2256773137512e-15!GO:0016604;nuclear body;6.59462333571403e-15!GO:0031966;mitochondrial membrane;8.60517517425566e-15!GO:0002376;immune system process;1.01461985987422e-14!GO:0043285;biopolymer catabolic process;1.31550653301679e-14!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.67171576038206e-14!GO:0022618;protein-RNA complex assembly;2.63468059081771e-14!GO:0065007;biological regulation;2.67145609341329e-14!GO:0006119;oxidative phosphorylation;2.70401792399671e-14!GO:0006366;transcription from RNA polymerase II promoter;2.81800044643136e-14!GO:0005524;ATP binding;3.31871232003321e-14!GO:0016310;phosphorylation;3.83883048043946e-14!GO:0016874;ligase activity;5.16998810938847e-14!GO:0003712;transcription cofactor activity;6.87867676448529e-14!GO:0032559;adenyl ribonucleotide binding;7.79549705098608e-14!GO:0048770;pigment granule;1.25106213494555e-13!GO:0042470;melanosome;1.25106213494555e-13!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.55392906513923e-13!GO:0019866;organelle inner membrane;1.60053909735042e-13!GO:0065009;regulation of a molecular function;2.5277752909893e-13!GO:0016607;nuclear speck;3.94014435091243e-13!GO:0005773;vacuole;4.1694771892635e-13!GO:0005794;Golgi apparatus;4.2065790370099e-13!GO:0012505;endomembrane system;7.85315748356294e-13!GO:0009057;macromolecule catabolic process;8.70298854576704e-13!GO:0030554;adenyl nucleotide binding;1.03903917088571e-12!GO:0051246;regulation of protein metabolic process;1.03903917088571e-12!GO:0008135;translation factor activity, nucleic acid binding;1.18195512567924e-12!GO:0005768;endosome;1.84757974712787e-12!GO:0044248;cellular catabolic process;2.58830777196399e-12!GO:0043069;negative regulation of programmed cell death;2.92505169727693e-12!GO:0019222;regulation of metabolic process;3.04809169163568e-12!GO:0043066;negative regulation of apoptosis;3.62421393783836e-12!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.48606614188081e-12!GO:0000323;lytic vacuole;7.61342527856471e-12!GO:0005764;lysosome;7.61342527856471e-12!GO:0030163;protein catabolic process;1.15235194509569e-11!GO:0007049;cell cycle;2.82344278492302e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.38517640146742e-11!GO:0031324;negative regulation of cellular metabolic process;5.71332598197154e-11!GO:0015935;small ribosomal subunit;5.73700402921e-11!GO:0015934;large ribosomal subunit;5.886792488011e-11!GO:0005743;mitochondrial inner membrane;6.63510945383594e-11!GO:0006916;anti-apoptosis;9.37734476099611e-11!GO:0006955;immune response;1.53083255124672e-10!GO:0005635;nuclear envelope;1.62267061928555e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.92212182002725e-10!GO:0008639;small protein conjugating enzyme activity;2.24685685034128e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.47265289420748e-10!GO:0048522;positive regulation of cellular process;2.47265289420748e-10!GO:0016564;transcription repressor activity;2.55605105898364e-10!GO:0017038;protein import;2.89696164130292e-10!GO:0004842;ubiquitin-protein ligase activity;3.35836251943005e-10!GO:0003743;translation initiation factor activity;3.41661994173492e-10!GO:0005730;nucleolus;4.28169368477499e-10!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.40298076494263e-10!GO:0019899;enzyme binding;5.49973389272434e-10!GO:0006413;translational initiation;5.80611104963622e-10!GO:0019787;small conjugating protein ligase activity;1.04008858729012e-09!GO:0009892;negative regulation of metabolic process;1.12944274495441e-09!GO:0006323;DNA packaging;1.18711916133034e-09!GO:0043228;non-membrane-bound organelle;1.20206417420064e-09!GO:0043232;intracellular non-membrane-bound organelle;1.20206417420064e-09!GO:0050790;regulation of catalytic activity;1.26522413204647e-09!GO:0006446;regulation of translational initiation;1.35735662381021e-09!GO:0007264;small GTPase mediated signal transduction;1.3687119280698e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.57762007761428e-09!GO:0031965;nuclear membrane;1.72668744048739e-09!GO:0044455;mitochondrial membrane part;1.73122331146033e-09!GO:0006457;protein folding;1.76180699278268e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.90399636832968e-09!GO:0000375;RNA splicing, via transesterification reactions;1.90399636832968e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.90399636832968e-09!GO:0009967;positive regulation of signal transduction;2.22306698662274e-09!GO:0031323;regulation of cellular metabolic process;2.23755003369013e-09!GO:0006606;protein import into nucleus;2.40111182337067e-09!GO:0048518;positive regulation of biological process;2.60167108147196e-09!GO:0051170;nuclear import;2.63353533525725e-09!GO:0016568;chromatin modification;2.63353533525725e-09!GO:0051726;regulation of cell cycle;2.77693489322229e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.56096430786532e-09!GO:0006417;regulation of translation;4.03836338315641e-09!GO:0000074;regulation of progression through cell cycle;4.14139709325953e-09!GO:0045786;negative regulation of progression through cell cycle;6.47104690061863e-09!GO:0009966;regulation of signal transduction;6.91175478880953e-09!GO:0016481;negative regulation of transcription;8.99188220645478e-09!GO:0048193;Golgi vesicle transport;9.57353162773092e-09!GO:0044453;nuclear membrane part;9.65313797851042e-09!GO:0043065;positive regulation of apoptosis;9.93706317856166e-09!GO:0016563;transcription activator activity;1.27755115280457e-08!GO:0043068;positive regulation of programmed cell death;1.36258855644884e-08!GO:0042623;ATPase activity, coupled;1.53586880130333e-08!GO:0006950;response to stress;1.58914294748444e-08!GO:0004386;helicase activity;1.66600484996222e-08!GO:0009615;response to virus;2.01591142331577e-08!GO:0003713;transcription coactivator activity;2.10059892713815e-08!GO:0051276;chromosome organization and biogenesis;2.50270314140601e-08!GO:0005746;mitochondrial respiratory chain;2.66799930651849e-08!GO:0019829;cation-transporting ATPase activity;2.94034125052153e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.42410606521216e-08!GO:0008047;enzyme activator activity;3.4774208047057e-08!GO:0016787;hydrolase activity;3.66504184251063e-08!GO:0016887;ATPase activity;3.76927190518583e-08!GO:0005783;endoplasmic reticulum;4.22519357191934e-08!GO:0016740;transferase activity;4.64532560107075e-08!GO:0004674;protein serine/threonine kinase activity;4.68783239481038e-08!GO:0030695;GTPase regulator activity;4.80165452165612e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.35258696587195e-08!GO:0006917;induction of apoptosis;7.48602102748752e-08!GO:0010468;regulation of gene expression;8.37652854961685e-08!GO:0050657;nucleic acid transport;8.46838637299568e-08!GO:0051236;establishment of RNA localization;8.46838637299568e-08!GO:0050658;RNA transport;8.46838637299568e-08!GO:0008026;ATP-dependent helicase activity;9.41983003886365e-08!GO:0009889;regulation of biosynthetic process;9.8183478214705e-08!GO:0006403;RNA localization;1.22259485998798e-07!GO:0012502;induction of programmed cell death;1.28793857282464e-07!GO:0016881;acid-amino acid ligase activity;1.33623884394918e-07!GO:0031326;regulation of cellular biosynthetic process;1.36975778460213e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.42521060848836e-07!GO:0050136;NADH dehydrogenase (quinone) activity;1.4938691157717e-07!GO:0003954;NADH dehydrogenase activity;1.4938691157717e-07!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.4938691157717e-07!GO:0048468;cell development;1.61205485276613e-07!GO:0051186;cofactor metabolic process;1.6851493288082e-07!GO:0044440;endosomal part;2.35612205969322e-07!GO:0010008;endosome membrane;2.35612205969322e-07!GO:0015986;ATP synthesis coupled proton transport;2.58238685671375e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.58238685671375e-07!GO:0045321;leukocyte activation;2.80195971742229e-07!GO:0006461;protein complex assembly;2.98904144415999e-07!GO:0005770;late endosome;3.11754695223776e-07!GO:0003714;transcription corepressor activity;3.27234040093744e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.52595371955964e-07!GO:0044432;endoplasmic reticulum part;3.96802818952457e-07!GO:0006974;response to DNA damage stimulus;4.0831530444124e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.10932488857686e-07!GO:0051082;unfolded protein binding;4.13597919309122e-07!GO:0022402;cell cycle process;4.1465007370225e-07!GO:0006350;transcription;5.58427425562039e-07!GO:0007265;Ras protein signal transduction;6.11110663740683e-07!GO:0005643;nuclear pore;6.31309565143347e-07!GO:0009056;catabolic process;6.80980134823726e-07!GO:0009260;ribonucleotide biosynthetic process;6.95518432441452e-07!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.17091937439018e-07!GO:0006164;purine nucleotide biosynthetic process;7.31993554956324e-07!GO:0005793;ER-Golgi intermediate compartment;7.31993554956324e-07!GO:0009259;ribonucleotide metabolic process;8.70955512253561e-07!GO:0006732;coenzyme metabolic process;8.87578868749048e-07!GO:0016301;kinase activity;1.00636104221023e-06!GO:0009150;purine ribonucleotide metabolic process;1.03779004286114e-06!GO:0005525;GTP binding;1.05065022644117e-06!GO:0003924;GTPase activity;1.09529653128697e-06!GO:0016773;phosphotransferase activity, alcohol group as acceptor;1.19684984628939e-06!GO:0032446;protein modification by small protein conjugation;1.26583409926093e-06!GO:0005083;small GTPase regulator activity;1.30025533906235e-06!GO:0042775;organelle ATP synthesis coupled electron transport;1.30025533906235e-06!GO:0042773;ATP synthesis coupled electron transport;1.30025533906235e-06!GO:0005774;vacuolar membrane;1.32481733876785e-06!GO:0005096;GTPase activator activity;1.42965876403157e-06!GO:0051028;mRNA transport;1.55279498757918e-06!GO:0008565;protein transporter activity;1.58492603614162e-06!GO:0042110;T cell activation;1.59769471371196e-06!GO:0006163;purine nucleotide metabolic process;1.78666792300857e-06!GO:0031980;mitochondrial lumen;1.85863192948643e-06!GO:0005759;mitochondrial matrix;1.85863192948643e-06!GO:0030964;NADH dehydrogenase complex (quinone);2.22128802302945e-06!GO:0045271;respiratory chain complex I;2.22128802302945e-06!GO:0005747;mitochondrial respiratory chain complex I;2.22128802302945e-06!GO:0016567;protein ubiquitination;2.26285626592437e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.05761701591142e-06!GO:0046649;lymphocyte activation;3.12944265072283e-06!GO:0006754;ATP biosynthetic process;3.27740621546361e-06!GO:0006753;nucleoside phosphate metabolic process;3.27740621546361e-06!GO:0031252;leading edge;3.58249304857436e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.80455620453352e-06!GO:0016197;endosome transport;4.17239191137894e-06!GO:0051336;regulation of hydrolase activity;5.36959917719577e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.41921627637562e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.75115966866942e-06!GO:0015078;hydrogen ion transmembrane transporter activity;5.87490436693211e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.93581647068523e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.30274089215901e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.30274089215901e-06!GO:0044437;vacuolar part;6.31163296763818e-06!GO:0005789;endoplasmic reticulum membrane;6.64122276034335e-06!GO:0008632;apoptotic program;6.70430050912737e-06!GO:0005765;lysosomal membrane;7.59452186585951e-06!GO:0016044;membrane organization and biogenesis;8.22719043659306e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.36477838744603e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.36477838744603e-06!GO:0060090;molecular adaptor activity;1.13422666089713e-05!GO:0048475;coated membrane;1.51203985102006e-05!GO:0030117;membrane coat;1.51203985102006e-05!GO:0030097;hemopoiesis;1.65334848366587e-05!GO:0030120;vesicle coat;1.65619886720081e-05!GO:0030662;coated vesicle membrane;1.65619886720081e-05!GO:0046930;pore complex;1.67011901162637e-05!GO:0003697;single-stranded DNA binding;1.68145793522197e-05!GO:0006401;RNA catabolic process;1.68290628654737e-05!GO:0043566;structure-specific DNA binding;1.79129190695445e-05!GO:0006281;DNA repair;1.81322298039694e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.94599040145739e-05!GO:0032561;guanyl ribonucleotide binding;2.01086707358906e-05!GO:0019001;guanyl nucleotide binding;2.01086707358906e-05!GO:0045892;negative regulation of transcription, DNA-dependent;2.27362948977756e-05!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.3775286686869e-05!GO:0006402;mRNA catabolic process;2.61673207075086e-05!GO:0046034;ATP metabolic process;2.70420058631901e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.75956313772887e-05!GO:0006468;protein amino acid phosphorylation;2.84148745526435e-05!GO:0009893;positive regulation of metabolic process;3.03792794200163e-05!GO:0051338;regulation of transferase activity;3.05332651039634e-05!GO:0065002;intracellular protein transport across a membrane;3.12288482386756e-05!GO:0005057;receptor signaling protein activity;3.17976510534465e-05!GO:0001775;cell activation;3.57176357799265e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.65068137512462e-05!GO:0009144;purine nucleoside triphosphate metabolic process;3.65068137512462e-05!GO:0051188;cofactor biosynthetic process;3.7403071396857e-05!GO:0065004;protein-DNA complex assembly;3.90316247625746e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.02569994559798e-05!GO:0045449;regulation of transcription;4.16783365090761e-05!GO:0005769;early endosome;4.54670217352729e-05!GO:0007050;cell cycle arrest;4.97059017775121e-05!GO:0009607;response to biotic stimulus;5.22637400473069e-05!GO:0001816;cytokine production;5.86010614681276e-05!GO:0006333;chromatin assembly or disassembly;5.86010614681276e-05!GO:0051168;nuclear export;5.90047022379839e-05!GO:0006351;transcription, DNA-dependent;6.50097745690913e-05!GO:0009141;nucleoside triphosphate metabolic process;6.52124499615077e-05!GO:0032774;RNA biosynthetic process;6.63937646214572e-05!GO:0043549;regulation of kinase activity;6.70088156068038e-05!GO:0044431;Golgi apparatus part;6.7505272999724e-05!GO:0030532;small nuclear ribonucleoprotein complex;7.14573000030357e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.4455622766354e-05!GO:0009108;coenzyme biosynthetic process;7.72074259704505e-05!GO:0031982;vesicle;7.931648404398e-05!GO:0009060;aerobic respiration;8.3134477889223e-05!GO:0009055;electron carrier activity;8.59675795602641e-05!GO:0030036;actin cytoskeleton organization and biogenesis;9.09112568410427e-05!GO:0008234;cysteine-type peptidase activity;9.29185028036182e-05!GO:0006752;group transfer coenzyme metabolic process;0.000100737737269526!GO:0045941;positive regulation of transcription;0.000107068033754945!GO:0000151;ubiquitin ligase complex;0.000107498543737153!GO:0042254;ribosome biogenesis and assembly;0.000109194634783802!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000116461025283245!GO:0006888;ER to Golgi vesicle-mediated transport;0.000116608805915982!GO:0008654;phospholipid biosynthetic process;0.00012157107729965!GO:0045859;regulation of protein kinase activity;0.000145379978929847!GO:0002520;immune system development;0.000145869858477451!GO:0031902;late endosome membrane;0.000149341239886297!GO:0046822;regulation of nucleocytoplasmic transport;0.000152838114971478!GO:0045259;proton-transporting ATP synthase complex;0.000155029733902705!GO:0005070;SH3/SH2 adaptor activity;0.000161275641201003!GO:0046983;protein dimerization activity;0.000162294433693289!GO:0030099;myeloid cell differentiation;0.00017190661825373!GO:0005839;proteasome core complex (sensu Eukaryota);0.000181713339567393!GO:0006897;endocytosis;0.000182597597811299!GO:0010324;membrane invagination;0.000182597597811299!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0001921894878736!GO:0005694;chromosome;0.000208985220717816!GO:0002757;immune response-activating signal transduction;0.000210972279021963!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000212144635176738!GO:0015399;primary active transmembrane transporter activity;0.000212144635176738!GO:0009719;response to endogenous stimulus;0.000230976983183077!GO:0003724;RNA helicase activity;0.000237577551368985!GO:0001726;ruffle;0.000264862220554088!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000279741329371899!GO:0051090;regulation of transcription factor activity;0.000287727950217892!GO:0006613;cotranslational protein targeting to membrane;0.000298081945507705!GO:0005813;centrosome;0.000308573745497973!GO:0051223;regulation of protein transport;0.000334468870775945!GO:0001819;positive regulation of cytokine production;0.00033615731378326!GO:0046519;sphingoid metabolic process;0.000350439048869758!GO:0045893;positive regulation of transcription, DNA-dependent;0.000350439048869758!GO:0043087;regulation of GTPase activity;0.000351963896657687!GO:0005667;transcription factor complex;0.000357061078614116!GO:0031410;cytoplasmic vesicle;0.0003659018771271!GO:0031325;positive regulation of cellular metabolic process;0.000406604003347681!GO:0006643;membrane lipid metabolic process;0.000417288025043963!GO:0000785;chromatin;0.000421139117734135!GO:0045637;regulation of myeloid cell differentiation;0.000429590655058111!GO:0007034;vacuolar transport;0.000452690035149785!GO:0000245;spliceosome assembly;0.000459167477910702!GO:0022415;viral reproductive process;0.00046302091284288!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000466968137486735!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.000505381215583903!GO:0048534;hemopoietic or lymphoid organ development;0.000510942854073433!GO:0005637;nuclear inner membrane;0.000521321051160875!GO:0004298;threonine endopeptidase activity;0.000533205707476161!GO:0005885;Arp2/3 protein complex;0.000535554574744209!GO:0002764;immune response-regulating signal transduction;0.000561352918585429!GO:0043623;cellular protein complex assembly;0.000561522421766503!GO:0042802;identical protein binding;0.000568655647307933!GO:0019904;protein domain specific binding;0.000569662945659402!GO:0007005;mitochondrion organization and biogenesis;0.000585992482133883!GO:0006672;ceramide metabolic process;0.000638095260382993!GO:0003729;mRNA binding;0.00064404633786054!GO:0002521;leukocyte differentiation;0.000648772955762315!GO:0006919;caspase activation;0.000648772955762315!GO:0031988;membrane-bound vesicle;0.000704675707234649!GO:0032940;secretion by cell;0.000705427981280543!GO:0005798;Golgi-associated vesicle;0.000714504276703191!GO:0051427;hormone receptor binding;0.000802949347943167!GO:0004672;protein kinase activity;0.000836805834974778!GO:0006355;regulation of transcription, DNA-dependent;0.000859751491466121!GO:0043492;ATPase activity, coupled to movement of substances;0.000890512202539781!GO:0005099;Ras GTPase activator activity;0.000892984126552559!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.000945268478984677!GO:0045333;cellular respiration;0.000966656692141897!GO:0030029;actin filament-based process;0.000986211045180228!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0009999640200947!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00100202862036478!GO:0007041;lysosomal transport;0.00102759516172335!GO:0000139;Golgi membrane;0.00104020433235941!GO:0005815;microtubule organizing center;0.00106732126266672!GO:0033157;regulation of intracellular protein transport;0.00108050172596418!GO:0042306;regulation of protein import into nucleus;0.00108050172596418!GO:0005741;mitochondrial outer membrane;0.00109386583128336!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00115021806600254!GO:0001817;regulation of cytokine production;0.00125217561177336!GO:0035257;nuclear hormone receptor binding;0.00126955509274104!GO:0046578;regulation of Ras protein signal transduction;0.00129445653591512!GO:0051251;positive regulation of lymphocyte activation;0.00129610525344045!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00129610525344045!GO:0043280;positive regulation of caspase activity;0.00132495997893383!GO:0043281;regulation of caspase activity;0.0013555486861656!GO:0008270;zinc ion binding;0.00138093608904725!GO:0016363;nuclear matrix;0.00156001925238958!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00161090708973501!GO:0043085;positive regulation of catalytic activity;0.00162880202537276!GO:0006399;tRNA metabolic process;0.0016835416601471!GO:0016023;cytoplasmic membrane-bound vesicle;0.00169625125057995!GO:0006650;glycerophospholipid metabolic process;0.00172477256946509!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00172540261214671!GO:0030658;transport vesicle membrane;0.00173708997330963!GO:0044427;chromosomal part;0.00174165875556344!GO:0000278;mitotic cell cycle;0.00181002293134913!GO:0051056;regulation of small GTPase mediated signal transduction;0.00188410897330082!GO:0008186;RNA-dependent ATPase activity;0.00189395311533461!GO:0005761;mitochondrial ribosome;0.00190804465587452!GO:0000313;organellar ribosome;0.00190804465587452!GO:0045646;regulation of erythrocyte differentiation;0.00196226836181821!GO:0032318;regulation of Ras GTPase activity;0.00196285158471079!GO:0016779;nucleotidyltransferase activity;0.00200192139138109!GO:0006099;tricarboxylic acid cycle;0.00204626628480803!GO:0046356;acetyl-CoA catabolic process;0.00204626628480803!GO:0018193;peptidyl-amino acid modification;0.00224370003131501!GO:0046467;membrane lipid biosynthetic process;0.00225943506271259!GO:0030217;T cell differentiation;0.00225943506271259!GO:0006607;NLS-bearing substrate import into nucleus;0.00232808676094069!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00233151196824256!GO:0006612;protein targeting to membrane;0.00237234250724469!GO:0016072;rRNA metabolic process;0.00240302623946361!GO:0051348;negative regulation of transferase activity;0.00248329422229363!GO:0007040;lysosome organization and biogenesis;0.00249071283285707!GO:0033116;ER-Golgi intermediate compartment membrane;0.00252015934849672!GO:0009117;nucleotide metabolic process;0.00254222177805705!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00255122872332255!GO:0002274;myeloid leukocyte activation;0.00262032527849719!GO:0016791;phosphoric monoester hydrolase activity;0.00268176511526319!GO:0031901;early endosome membrane;0.00270817193529805!GO:0033673;negative regulation of kinase activity;0.00272361142371791!GO:0006469;negative regulation of protein kinase activity;0.00272361142371791!GO:0030258;lipid modification;0.0027879426807999!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00287265617537658!GO:0004812;aminoacyl-tRNA ligase activity;0.00287265617537658!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00287265617537658!GO:0030384;phosphoinositide metabolic process;0.00289909100721556!GO:0042990;regulation of transcription factor import into nucleus;0.00300187762663627!GO:0042991;transcription factor import into nucleus;0.00300187762663627!GO:0006352;transcription initiation;0.00304437178409083!GO:0006364;rRNA processing;0.00305475468280993!GO:0031968;organelle outer membrane;0.00307090942697909!GO:0051789;response to protein stimulus;0.00313462691803806!GO:0006986;response to unfolded protein;0.00313462691803806!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00349273364335638!GO:0006818;hydrogen transport;0.00356279226364612!GO:0030660;Golgi-associated vesicle membrane;0.0037297573639066!GO:0019867;outer membrane;0.00377562456666998!GO:0019901;protein kinase binding;0.00385091873063983!GO:0007259;JAK-STAT cascade;0.0039275180091112!GO:0008287;protein serine/threonine phosphatase complex;0.00420884969386044!GO:0030218;erythrocyte differentiation;0.0043035939491418!GO:0019882;antigen processing and presentation;0.00439606947554663!GO:0015992;proton transport;0.00445653518262813!GO:0007033;vacuole organization and biogenesis;0.00449090487060366!GO:0004004;ATP-dependent RNA helicase activity;0.00451456199495186!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.00451456199495186!GO:0043038;amino acid activation;0.00467755735647104!GO:0006418;tRNA aminoacylation for protein translation;0.00467755735647104!GO:0043039;tRNA aminoacylation;0.00467755735647104!GO:0017091;AU-rich element binding;0.00473552197674043!GO:0050779;RNA destabilization;0.00473552197674043!GO:0000289;poly(A) tail shortening;0.00473552197674043!GO:0004428;inositol or phosphatidylinositol kinase activity;0.00480499409307333!GO:0051092;activation of NF-kappaB transcription factor;0.00486836740823323!GO:0048471;perinuclear region of cytoplasm;0.00486836740823323!GO:0022890;inorganic cation transmembrane transporter activity;0.00487897074066915!GO:0015631;tubulin binding;0.00488758375279274!GO:0051252;regulation of RNA metabolic process;0.00504699922343284!GO:0004722;protein serine/threonine phosphatase activity;0.00513057063962495!GO:0051059;NF-kappaB binding;0.00514688351375742!GO:0043433;negative regulation of transcription factor activity;0.00521876413046799!GO:0006260;DNA replication;0.00524285752249697!GO:0006084;acetyl-CoA metabolic process;0.00541743728051264!GO:0016251;general RNA polymerase II transcription factor activity;0.00544029746574707!GO:0043021;ribonucleoprotein binding;0.00548884923563803!GO:0002440;production of molecular mediator of immune response;0.00585849481896363!GO:0051345;positive regulation of hydrolase activity;0.00604947520858969!GO:0016311;dephosphorylation;0.00606422650786491!GO:0005048;signal sequence binding;0.00609028686564999!GO:0045746;negative regulation of Notch signaling pathway;0.00611696222047536!GO:0051707;response to other organism;0.00637060522675472!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00638717066502767!GO:0003725;double-stranded RNA binding;0.0064082876442679!GO:0031625;ubiquitin protein ligase binding;0.00641709037336162!GO:0032386;regulation of intracellular transport;0.00645250048096044!GO:0006611;protein export from nucleus;0.00649432173891532!GO:0006891;intra-Golgi vesicle-mediated transport;0.00652151202410393!GO:0051187;cofactor catabolic process;0.0065876518512338!GO:0043488;regulation of mRNA stability;0.0066428005486245!GO:0043487;regulation of RNA stability;0.0066428005486245!GO:0030149;sphingolipid catabolic process;0.00674502113640598!GO:0004185;serine carboxypeptidase activity;0.00674502113640598!GO:0043621;protein self-association;0.00674600022140213!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00676542219871739!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00676542219871739!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00676542219871739!GO:0000118;histone deacetylase complex;0.00686130192947872!GO:0004177;aminopeptidase activity;0.00689158289421072!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00690439218794973!GO:0003690;double-stranded DNA binding;0.00690439218794973!GO:0030118;clathrin coat;0.00698427384645095!GO:0019210;kinase inhibitor activity;0.00699353221745766!GO:0019843;rRNA binding;0.00710154935874006!GO:0045045;secretory pathway;0.00712338231584249!GO:0019783;small conjugating protein-specific protease activity;0.00712338231584249!GO:0042613;MHC class II protein complex;0.0072255097991089!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00722628282798511!GO:0000082;G1/S transition of mitotic cell cycle;0.00725352897160605!GO:0004860;protein kinase inhibitor activity;0.00729268124079759!GO:0044262;cellular carbohydrate metabolic process;0.00745217747626342!GO:0030176;integral to endoplasmic reticulum membrane;0.00752875681103079!GO:0008624;induction of apoptosis by extracellular signals;0.00768248074690089!GO:0050851;antigen receptor-mediated signaling pathway;0.00769300925436759!GO:0051329;interphase of mitotic cell cycle;0.00774000677926167!GO:0046474;glycerophospholipid biosynthetic process;0.00822772699405376!GO:0000209;protein polyubiquitination;0.00826511147874368!GO:0009109;coenzyme catabolic process;0.00827072129389215!GO:0008139;nuclear localization sequence binding;0.00867351853354638!GO:0045792;negative regulation of cell size;0.00867351853354638!GO:0042101;T cell receptor complex;0.0089103275713957!GO:0051325;interphase;0.00904427007018025!GO:0051098;regulation of binding;0.00926333437899894!GO:0004843;ubiquitin-specific protease activity;0.00961675608052082!GO:0008017;microtubule binding;0.00979289634676358!GO:0008637;apoptotic mitochondrial changes;0.00984162484042279!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0100853194002328!GO:0000165;MAPKKK cascade;0.0101736031898003!GO:0004197;cysteine-type endopeptidase activity;0.0104976247128373!GO:0050870;positive regulation of T cell activation;0.0107229043552175!GO:0015630;microtubule cytoskeleton;0.0107366626922728!GO:0006984;ER-nuclear signaling pathway;0.0108520396881273!GO:0046966;thyroid hormone receptor binding;0.0109160727111016!GO:0001772;immunological synapse;0.0109352285850674!GO:0030308;negative regulation of cell growth;0.011034541658786!GO:0019900;kinase binding;0.011146008642146!GO:0002252;immune effector process;0.0112930016706373!GO:0019220;regulation of phosphate metabolic process;0.0113182834277281!GO:0051174;regulation of phosphorus metabolic process;0.0113182834277281!GO:0051091;positive regulation of transcription factor activity;0.0113558485268896!GO:0030098;lymphocyte differentiation;0.0115649981439175!GO:0030041;actin filament polymerization;0.0117117639134342!GO:0030867;rough endoplasmic reticulum membrane;0.0119450889735536!GO:0009165;nucleotide biosynthetic process;0.011977533309289!GO:0048487;beta-tubulin binding;0.0124242638837065!GO:0031497;chromatin assembly;0.0126874702887127!GO:0015923;mannosidase activity;0.0127026371169002!GO:0006665;sphingolipid metabolic process;0.0127882061811212!GO:0045926;negative regulation of growth;0.0127882061811212!GO:0003746;translation elongation factor activity;0.013288313269243!GO:0006644;phospholipid metabolic process;0.0133723312836177!GO:0006414;translational elongation;0.0134493844969154!GO:0045603;positive regulation of endothelial cell differentiation;0.0134606778532988!GO:0050871;positive regulation of B cell activation;0.013571377307699!GO:0006354;RNA elongation;0.0136441832964343!GO:0005484;SNAP receptor activity;0.0138496769574449!GO:0002467;germinal center formation;0.0139102276591458!GO:0045454;cell redox homeostasis;0.0141983007684342!GO:0046489;phosphoinositide biosynthetic process;0.0141983007684342!GO:0003702;RNA polymerase II transcription factor activity;0.0142968570111629!GO:0004221;ubiquitin thiolesterase activity;0.0144106987878037!GO:0008383;manganese superoxide dismutase activity;0.0145352087714694!GO:0001315;age-dependent response to reactive oxygen species;0.0145352087714694!GO:0019079;viral genome replication;0.0147505893282241!GO:0006914;autophagy;0.0149410731155749!GO:0043407;negative regulation of MAP kinase activity;0.015133085672147!GO:0019058;viral infectious cycle;0.0151581063720041!GO:0000287;magnesium ion binding;0.0154564250429046!GO:0033367;protein localization in mast cell secretory granule;0.0154564250429046!GO:0033365;protein localization in organelle;0.0154564250429046!GO:0033371;T cell secretory granule organization and biogenesis;0.0154564250429046!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0154564250429046!GO:0033375;protease localization in T cell secretory granule;0.0154564250429046!GO:0042629;mast cell granule;0.0154564250429046!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0154564250429046!GO:0033364;mast cell secretory granule organization and biogenesis;0.0154564250429046!GO:0033380;granzyme B localization in T cell secretory granule;0.0154564250429046!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0154564250429046!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0154564250429046!GO:0033368;protease localization in mast cell secretory granule;0.0154564250429046!GO:0033366;protein localization in secretory granule;0.0154564250429046!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0154564250429046!GO:0033374;protein localization in T cell secretory granule;0.0154564250429046!GO:0051235;maintenance of localization;0.0159673043151555!GO:0006334;nucleosome assembly;0.0163149255370212!GO:0016584;nucleosome positioning;0.0169832850412175!GO:0005669;transcription factor TFIID complex;0.0170977063678296!GO:0019883;antigen processing and presentation of endogenous antigen;0.0171398263013735!GO:0050900;leukocyte migration;0.0172767644140362!GO:0006954;inflammatory response;0.0173440901298285!GO:0006405;RNA export from nucleus;0.0173845356318233!GO:0001562;response to protozoan;0.0177801465219331!GO:0046914;transition metal ion binding;0.0177864615664732!GO:0030127;COPII vesicle coat;0.0177920063079963!GO:0012507;ER to Golgi transport vesicle membrane;0.0177920063079963!GO:0030027;lamellipodium;0.0178766444566772!GO:0008286;insulin receptor signaling pathway;0.0183661765239719!GO:0050865;regulation of cell activation;0.0189373950225649!GO:0017166;vinculin binding;0.0189717410736562!GO:0030518;steroid hormone receptor signaling pathway;0.019015542853051!GO:0004702;receptor signaling protein serine/threonine kinase activity;0.0192681490724853!GO:0045058;T cell selection;0.0193472070595988!GO:0051051;negative regulation of transport;0.0197490584387044!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0204675696768663!GO:0007266;Rho protein signal transduction;0.0205526219435766!GO:0033549;MAP kinase phosphatase activity;0.0209519048464935!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0209519048464935!GO:0031072;heat shock protein binding;0.021350720544359!GO:0030134;ER to Golgi transport vesicle;0.0216454546292359!GO:0006595;polyamine metabolic process;0.0226072114861019!GO:0006516;glycoprotein catabolic process;0.023460893219975!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0234854211414958!GO:0002819;regulation of adaptive immune response;0.0234854211414958!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0236583641283362!GO:0046854;phosphoinositide phosphorylation;0.0238847181013044!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0244744257662832!GO:0006376;mRNA splice site selection;0.0246759725911233!GO:0043022;ribosome binding;0.0246759725911233!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0246759725911233!GO:0048500;signal recognition particle;0.0248366219844833!GO:0030125;clathrin vesicle coat;0.0248972457699489!GO:0030665;clathrin coated vesicle membrane;0.0248972457699489!GO:0001516;prostaglandin biosynthetic process;0.0250255263553725!GO:0046457;prostanoid biosynthetic process;0.0250255263553725!GO:0030968;unfolded protein response;0.0250895558294028!GO:0051249;regulation of lymphocyte activation;0.0263145290534809!GO:0005085;guanyl-nucleotide exchange factor activity;0.0263145290534809!GO:0008333;endosome to lysosome transport;0.0263655834740504!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0266536014842007!GO:0005684;U2-dependent spliceosome;0.0269623365647351!GO:0006661;phosphatidylinositol biosynthetic process;0.0269623365647351!GO:0030119;AP-type membrane coat adaptor complex;0.0273504909893499!GO:0007162;negative regulation of cell adhesion;0.0276622373466691!GO:0005791;rough endoplasmic reticulum;0.0279161888088265!GO:0032763;regulation of mast cell cytokine production;0.0279161888088265!GO:0032762;mast cell cytokine production;0.0279161888088265!GO:0051049;regulation of transport;0.0282825103312444!GO:0008610;lipid biosynthetic process;0.0285415138730491!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.029103770954598!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.029103770954598!GO:0009126;purine nucleoside monophosphate metabolic process;0.029103770954598!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.029103770954598!GO:0005905;coated pit;0.0291341697855171!GO:0005869;dynactin complex;0.0297313571455628!GO:0045639;positive regulation of myeloid cell differentiation;0.030642083832845!GO:0048872;homeostasis of number of cells;0.0312321884544367!GO:0042108;positive regulation of cytokine biosynthetic process;0.0320333604879148!GO:0003711;transcription elongation regulator activity;0.0321889615552265!GO:0048002;antigen processing and presentation of peptide antigen;0.0324869567558111!GO:0030133;transport vesicle;0.0326385739168402!GO:0042287;MHC protein binding;0.0327026750709153!GO:0046834;lipid phosphorylation;0.0333801108909716!GO:0046426;negative regulation of JAK-STAT cascade;0.0333849632845602!GO:0002218;activation of innate immune response;0.0334912793134708!GO:0002758;innate immune response-activating signal transduction;0.0334912793134708!GO:0050811;GABA receptor binding;0.0336331819282543!GO:0008629;induction of apoptosis by intracellular signals;0.0336331819282543!GO:0031098;stress-activated protein kinase signaling pathway;0.0344577319426529!GO:0006338;chromatin remodeling;0.0345026358045244!GO:0004721;phosphoprotein phosphatase activity;0.0346847221817526!GO:0042611;MHC protein complex;0.0355626835133088!GO:0030521;androgen receptor signaling pathway;0.0358949458821983!GO:0045113;regulation of integrin biosynthetic process;0.0370628331663897!GO:0045112;integrin biosynthetic process;0.0370628331663897!GO:0019377;glycolipid catabolic process;0.0370628331663897!GO:0006383;transcription from RNA polymerase III promoter;0.0372673884597271!GO:0030131;clathrin adaptor complex;0.0376134097753186!GO:0002224;toll-like receptor signaling pathway;0.0376134097753186!GO:0002221;pattern recognition receptor signaling pathway;0.0376134097753186!GO:0030674;protein binding, bridging;0.0376157942918704!GO:0042832;defense response to protozoan;0.0379157631514362!GO:0032760;positive regulation of tumor necrosis factor production;0.0379157631514362!GO:0006310;DNA recombination;0.0379157631514362!GO:0007006;mitochondrial membrane organization and biogenesis;0.0379157631514362!GO:0045936;negative regulation of phosphate metabolic process;0.0386333619255967!GO:0050863;regulation of T cell activation;0.0386333619255967!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.038797095215076!GO:0045047;protein targeting to ER;0.038797095215076!GO:0040029;regulation of gene expression, epigenetic;0.0387985013568837!GO:0008154;actin polymerization and/or depolymerization;0.0390772752875481!GO:0016788;hydrolase activity, acting on ester bonds;0.0391464695431623!GO:0006261;DNA-dependent DNA replication;0.0391576680784369!GO:0000188;inactivation of MAPK activity;0.0391718485990044!GO:0006470;protein amino acid dephosphorylation;0.0394406719291035!GO:0006458;'de novo' protein folding;0.0396614061089438!GO:0051084;'de novo' posttranslational protein folding;0.0396614061089438!GO:0004563;beta-N-acetylhexosaminidase activity;0.0397666211268057!GO:0045064;T-helper 2 cell differentiation;0.0397666211268057!GO:0000060;protein import into nucleus, translocation;0.0397666211268057!GO:0042092;T-helper 2 type immune response;0.0404735194447003!GO:0008276;protein methyltransferase activity;0.0408728766844041!GO:0051020;GTPase binding;0.0409357374125052!GO:0002718;regulation of cytokine production during immune response;0.0413903238621094!GO:0002367;cytokine production during immune response;0.0413903238621094!GO:0002700;regulation of production of molecular mediator of immune response;0.0413903238621094!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0413903238621094!GO:0006013;mannose metabolic process;0.0417812435140065!GO:0042992;negative regulation of transcription factor import into nucleus;0.0421614305877899!GO:0042308;negative regulation of protein import into nucleus;0.0421614305877899!GO:0016605;PML body;0.0421614305877899!GO:0031301;integral to organelle membrane;0.0428849688232127!GO:0046466;membrane lipid catabolic process;0.0429781761739476!GO:0002250;adaptive immune response;0.0433417950760809!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0433417950760809!GO:0019371;cyclooxygenase pathway;0.0433417950760809!GO:0046839;phospholipid dephosphorylation;0.0441312843203276!GO:0006509;membrane protein ectodomain proteolysis;0.0441847510128833!GO:0033619;membrane protein proteolysis;0.0441847510128833!GO:0044255;cellular lipid metabolic process;0.0446537957160954!GO:0000339;RNA cap binding;0.0451844166594159!GO:0045089;positive regulation of innate immune response;0.0455749465163699!GO:0045088;regulation of innate immune response;0.0455749465163699!GO:0042113;B cell activation;0.0463084683992627!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0464482486020255!GO:0000303;response to superoxide;0.0464620692597391!GO:0030433;ER-associated protein catabolic process;0.0466725825899498!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0466725825899498!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0468745646973335!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0468745646973335!GO:0001836;release of cytochrome c from mitochondria;0.0468745646973335!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0470119992481171!GO:0035035;histone acetyltransferase binding;0.0470119992481171!GO:0045185;maintenance of protein localization;0.0473271836625934!GO:0051347;positive regulation of transferase activity;0.0474053120250261!GO:0005788;endoplasmic reticulum lumen;0.0478722750849281!GO:0043300;regulation of leukocyte degranulation;0.0483057986636024!GO:0016566;specific transcriptional repressor activity;0.048546512637274!GO:0002237;response to molecule of bacterial origin;0.0486695827736797!GO:0042326;negative regulation of phosphorylation;0.0491142561476496!GO:0009299;mRNA transcription;0.0493732326862946!GO:0002443;leukocyte mediated immunity;0.0494156029830324!GO:0016279;protein-lysine N-methyltransferase activity;0.0494156029830324!GO:0018024;histone-lysine N-methyltransferase activity;0.0494156029830324!GO:0016278;lysine N-methyltransferase activity;0.0494156029830324!GO:0006968;cellular defense response;0.0494361260079373!GO:0008312;7S RNA binding;0.0498737460012547!GO:0030503;regulation of cell redox homeostasis;0.049874188048791 | |||
|sample_id=11305 | |||
|sample_note= | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=blood | |||
|top_motifs=NFKB1_REL_RELA:5.08230965593;PAX2:4.41836472384;BACH2:4.32448999431;FOS_FOS{B,L1}_JUN{B,D}:4.21059998901;NFE2:4.1175926303;FOSL2:4.02496492467;PAX3,7:3.96371083425;RUNX1..3:3.54740982429;NFIL3:3.52722077513;SPIB:3.4791065025;SPI1:3.4743005652;CREB1:3.46074257127;CEBPA,B_DDIT3:3.24569162443;ATF5_CREB3:3.19848594365;ETS1,2:3.18027418374;ATF4:3.10469233613;HLF:2.96317441423;RXRA_VDR{dimer}:2.94756982991;TGIF1:2.66078904453;HMGA1,2:2.56870515411;NANOG{mouse}:2.42008304276;NFATC1..3:2.39288527589;DMAP1_NCOR{1,2}_SMARC:2.36722411987;NFE2L2:2.34449376982;IRF1,2:2.33345403137;FOXN1:2.29228965811;MAFB:2.20530963641;BPTF:2.1988312344;NFE2L1:2.1693149549;FOXP3:2.06441199174;JUN:2.01545368279;FOXO1,3,4:1.97186414197;PITX1..3:1.94381516015;PAX8:1.92707973226;STAT2,4,6:1.88402584618;RFX2..5_RFXANK_RFXAP:1.84386237415;EP300:1.53749603885;ELF1,2,4:1.47703659239;IRF7:1.47691790397;SREBF1,2:1.47200526651;HIF1A:1.41758841898;FOX{D1,D2}:1.32886475019;FOXP1:1.30893613073;HMX1:1.30468838881;ATF2:1.15325570418;RORA:0.974713797258;RBPJ:0.902864513382;ATF6:0.835717020959;PDX1:0.648489413143;T:0.552910050878;HOX{A5,B5}:0.478892387888;HBP1_HMGB_SSRP1_UBTF:0.40331126534;HSF1,2:0.38547436618;NKX2-1,4:0.368431361393;SMAD1..7,9:0.357956955679;EGR1..3:0.35341250674;GATA4:0.333865043048;PPARG:0.270494508224;ZBTB16:0.202659964923;GLI1..3:0.0982624095947;RXR{A,B,G}:0.0823156280762;FOXL1:0.0755093948109;XBP1:-0.000291299714892;ALX4:-0.00130590285284;BREu{core}:-0.0443068387715;TFCP2:-0.0593068828367;IKZF2:-0.111772896466;MEF2{A,B,C,D}:-0.189045453915;FOX{F1,F2,J1}:-0.190513732229;SOX2:-0.197018847529;HOXA9_MEIS1:-0.213075481998;IKZF1:-0.219100282744;NANOG:-0.224545824715;ESR1:-0.271500522766;TFAP2{A,C}:-0.31106134335;POU2F1..3:-0.31890956582;MYB:-0.374937297488;TFDP1:-0.39418224385;TBX4,5:-0.410709178096;TLX2:-0.418007238004;FOXD3:-0.491098318429;ZNF384:-0.503747260213;MTE{core}:-0.520366442969;SRF:-0.523326430461;NKX6-1,2:-0.536443316948;NR1H4:-0.538546176373;RREB1:-0.540729414507;POU5F1:-0.581891072662;AHR_ARNT_ARNT2:-0.590577851567;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.641900011528;MYFfamily:-0.657501712245;ESRRA:-0.678341720931;TFAP2B:-0.685013603042;NKX3-1:-0.687225602219;ZFP161:-0.68955121157;TOPORS:-0.749493043806;EN1,2:-0.763415796958;FOXM1:-0.785715086156;MED-1{core}:-0.788913133253;MZF1:-0.820792327228;RFX1:-0.857847094305;ZNF238:-0.921976143801;TFAP4:-0.930342104912;CDX1,2,4:-0.960131413639;PRDM1:-0.982997092915;PATZ1:-0.998380007124;HNF4A_NR2F1,2:-1.0007047165;HES1:-1.01056376144;SP1:-1.01969919133;OCT4_SOX2{dimer}:-1.02719679905;GCM1,2:-1.05877315501;NHLH1,2:-1.07870733112;STAT1,3:-1.14501575957;VSX1,2:-1.17814918019;TEF:-1.17985289639;REST:-1.20902180052;NR6A1:-1.21986741576;STAT5{A,B}:-1.22142247284;E2F1..5:-1.26922134838;MTF1:-1.27818612441;GATA6:-1.29220912468;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36111563106;HIC1:-1.38759642307;HNF1A:-1.4275302304;DBP:-1.45524875683;TAL1_TCF{3,4,12}:-1.46503108619;NR5A1,2:-1.4811854755;TBP:-1.48618832639;PAX6:-1.49777804591;FOXA2:-1.50934686066;CUX2:-1.51618558936;XCPE1{core}:-1.57071866192;PAX4:-1.59613947381;ZEB1:-1.59786219366;GZF1:-1.60385772831;MAZ:-1.61799977164;EBF1:-1.62985591695;MYOD1:-1.65781457092;TP53:-1.67558513848;SOX{8,9,10}:-1.69632706858;PRRX1,2:-1.71042244183;PAX5:-1.72880363428;SOX5:-1.77075400433;CRX:-1.83135664094;NR3C1:-1.86363844077;TEAD1:-1.88904837761;GTF2I:-1.9004463929;SPZ1:-1.91703769619;PAX1,9:-1.92006667353;NFY{A,B,C}:-1.94677196172;ZNF423:-1.96703939709;NKX2-3_NKX2-5:-1.97908565521;GTF2A1,2:-1.98827515594;ZNF148:-2.0144936474;SNAI1..3:-2.03016909559;ADNP_IRX_SIX_ZHX:-2.08731527243;NKX2-2,8:-2.09114181371;FOX{I1,J2}:-2.12634714699;LEF1_TCF7_TCF7L1,2:-2.12675761733;TLX1..3_NFIC{dimer}:-2.1269354876;NFIX:-2.14718596311;ZBTB6:-2.15872224595;AIRE:-2.16325862978;ZIC1..3:-2.16408956335;POU3F1..4:-2.20988204258;bHLH_family:-2.24783700091;POU6F1:-2.26454873063;ELK1,4_GABP{A,B1}:-2.28251089885;HOX{A4,D4}:-2.32280396702;HOX{A6,A7,B6,B7}:-2.37257364268;ALX1:-2.3980663675;MYBL2:-2.45362089229;NRF1:-2.48180476126;PBX1:-2.49357880482;CDC5L:-2.4948067781;LMO2:-2.59217185798;UFEwm:-2.66037360557;FOXQ1:-2.69331047462;ONECUT1,2:-2.71178550209;SOX17:-2.71493584647;KLF4:-2.76535775928;ARID5B:-2.83094260926;GFI1:-2.90158672203;GFI1B:-3.01520443551;LHX3,4:-3.04930490924;AR:-3.11532178074;EVI1:-3.15947788815;NKX3-2:-3.16922513239;ZNF143:-3.37854469335;YY1:-3.4660338723;HAND1,2:-3.80661182104;POU1F1:-3.90774299165 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11305-117B9;search_select_hide=table117:FF:11305-117B9 | |||
}} | }} |
Latest revision as of 16:31, 3 June 2020
Name: | CD14+ Monocytes, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11954 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11954
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11954
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.339 |
10 | 10 | 0.0132 |
100 | 100 | 0.694 |
101 | 101 | 0.992 |
102 | 102 | 0.952 |
103 | 103 | 0.677 |
104 | 104 | 0.489 |
105 | 105 | 0.111 |
106 | 106 | 5.49669e-4 |
107 | 107 | 0.32 |
108 | 108 | 0.621 |
109 | 109 | 0.435 |
11 | 11 | 0.417 |
110 | 110 | 0.425 |
111 | 111 | 0.0661 |
112 | 112 | 0.579 |
113 | 113 | 0.161 |
114 | 114 | 0.125 |
115 | 115 | 0.172 |
116 | 116 | 0.691 |
117 | 117 | 0.0623 |
118 | 118 | 0.167 |
119 | 119 | 0.472 |
12 | 12 | 0.234 |
120 | 120 | 0.292 |
121 | 121 | 0.633 |
122 | 122 | 0.698 |
123 | 123 | 0.00612 |
124 | 124 | 0.751 |
125 | 125 | 0.341 |
126 | 126 | 0.204 |
127 | 127 | 0.775 |
128 | 128 | 0.0775 |
129 | 129 | 0.955 |
13 | 13 | 0.166 |
130 | 130 | 0.181 |
131 | 131 | 0.966 |
132 | 132 | 0.0527 |
133 | 133 | 0.498 |
134 | 134 | 0.808 |
135 | 135 | 0.613 |
136 | 136 | 0.932 |
137 | 137 | 0.0117 |
138 | 138 | 0.278 |
139 | 139 | 0.0625 |
14 | 14 | 0.33 |
140 | 140 | 0.255 |
141 | 141 | 0.398 |
142 | 142 | 0.248 |
143 | 143 | 0.0319 |
144 | 144 | 0.624 |
145 | 145 | 0.609 |
146 | 146 | 0.738 |
147 | 147 | 0.47 |
148 | 148 | 0.0464 |
149 | 149 | 0.796 |
15 | 15 | 0.185 |
150 | 150 | 0.581 |
151 | 151 | 0.192 |
152 | 152 | 0.243 |
153 | 153 | 0.744 |
154 | 154 | 0.413 |
155 | 155 | 0.467 |
156 | 156 | 0.574 |
157 | 157 | 0.467 |
158 | 158 | 0.0173 |
159 | 159 | 0.486 |
16 | 16 | 0.787 |
160 | 160 | 0.738 |
161 | 161 | 0.549 |
162 | 162 | 0.0987 |
163 | 163 | 0.189 |
164 | 164 | 0.0586 |
165 | 165 | 0.29 |
166 | 166 | 0.594 |
167 | 167 | 0.225 |
168 | 168 | 0.135 |
169 | 169 | 0.0527 |
17 | 17 | 0.346 |
18 | 18 | 0.233 |
19 | 19 | 0.827 |
2 | 2 | 0.35 |
20 | 20 | 0.259 |
21 | 21 | 0.869 |
22 | 22 | 0.424 |
23 | 23 | 0.0509 |
24 | 24 | 0.758 |
25 | 25 | 0.357 |
26 | 26 | 0.176 |
27 | 27 | 0.521 |
28 | 28 | 0.41 |
29 | 29 | 0.269 |
3 | 3 | 0.259 |
30 | 30 | 0.228 |
31 | 31 | 0.877 |
32 | 32 | 0.12 |
33 | 33 | 0.335 |
34 | 34 | 0.705 |
35 | 35 | 0.134 |
36 | 36 | 0.0999 |
37 | 37 | 0.162 |
38 | 38 | 0.484 |
39 | 39 | 0.8 |
4 | 4 | 0.864 |
40 | 40 | 0.24 |
41 | 41 | 0.0057 |
42 | 42 | 0.456 |
43 | 43 | 0.0282 |
44 | 44 | 0.448 |
45 | 45 | 0.99 |
46 | 46 | 0.352 |
47 | 47 | 0.899 |
48 | 48 | 0.821 |
49 | 49 | 0.0899 |
5 | 5 | 0.251 |
50 | 50 | 0.9 |
51 | 51 | 0.475 |
52 | 52 | 0.402 |
53 | 53 | 0.201 |
54 | 54 | 0.534 |
55 | 55 | 0.933 |
56 | 56 | 0.918 |
57 | 57 | 0.832 |
58 | 58 | 0.204 |
59 | 59 | 0.514 |
6 | 6 | 0.936 |
60 | 60 | 0.0629 |
61 | 61 | 0.444 |
62 | 62 | 0.13 |
63 | 63 | 0.717 |
64 | 64 | 0.607 |
65 | 65 | 0.305 |
66 | 66 | 0.0459 |
67 | 67 | 0.629 |
68 | 68 | 0.214 |
69 | 69 | 0.205 |
7 | 7 | 0.262 |
70 | 70 | 0.0728 |
71 | 71 | 0.0543 |
72 | 72 | 0.252 |
73 | 73 | 0.209 |
74 | 74 | 0.0439 |
75 | 75 | 0.211 |
76 | 76 | 0.0681 |
77 | 77 | 0.998 |
78 | 78 | 0.256 |
79 | 79 | 0.619 |
8 | 8 | 0.955 |
80 | 80 | 0.122 |
81 | 81 | 0.406 |
82 | 82 | 0.255 |
83 | 83 | 0.284 |
84 | 84 | 0.0385 |
85 | 85 | 0.0558 |
86 | 86 | 0.0441 |
87 | 87 | 0.864 |
88 | 88 | 0.871 |
89 | 89 | 0.917 |
9 | 9 | 0.409 |
90 | 90 | 0.264 |
91 | 91 | 0.303 |
92 | 92 | 0.362 |
93 | 93 | 0.727 |
94 | 94 | 0.0853 |
95 | 95 | 0.262 |
96 | 96 | 0.461 |
97 | 97 | 0.757 |
98 | 98 | 0.135 |
99 | 99 | 0.00562 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11954
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000024 (human CD14-positive monocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)