FF:11305-117B9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005394 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005394 | ||
|accession_numbers=CAGE;DRX008127;DRR008999;DRZ000424;DRZ001809;DRZ011774;DRZ013159 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037117;DRR041483;DRZ007125 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000024 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.91!815.61!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.61!405.50!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.42!260.71!ZNF385A;;chr14:35873947..35873965,-!p1@NFKBIA!2.22!9737.03!NFKBIA;;chr11:47399947..47399961,-!p3@SPI1!2.22!164.85!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.19!153.82!IRF8;;chr3:101546827..101546847,+!p2@NFKBIZ!2.16!199.34!NFKBIZ;;chr2:145271342..145271377,-!p5@ZEB2!2.14!136.77!ZEB2;;chr2:145277640..145277771,-!p1@ZEB2!2.13!1656.70!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!2.11!170.06!THAP2;;chr20:39317868..39317884,-!p1@MAFB!2.08!1332.82!MAFB;;chr11:47400062..47400077,-!p2@SPI1!2.01!102.48!SPI1;;chr19:45971246..45971265,+!p1@FOSB!1.98!1638.65!FOSB;;chr6:106534192..106534224,+!p1@PRDM1!1.93!228.82!PRDM1;;chr14:35872453..35872485,-!p2@NFKBIA!1.93!198.34!NFKBIA;;chr1:25256756..25256774,-!p1@RUNX3!1.91!145.19!RUNX3;;chr11:47399996..47400014,-!p4@SPI1!1.91!79.82!SPI1;;chr8:123793988..123794016,+!p1@ZHX2!1.89!131.16!ZHX2;;chr2:145275162..145275202,-!p2@ZEB2!1.86!397.08!ZEB2;;chr7:17338324..17338341,+!p3@AHR!1.86!229.02!AHR;;chr3:101568349..101568365,+!p1@NFKBIZ!1.84!3280.31!NFKBIZ;;chr4:103422499..103422632,+!p1@NFKB1!1.83!1314.17!NFKB1;;chr2:157189180..157189290,-!p1@NR4A2!1.80!308.04!NR4A2;;chr6:12011943..12012015,+!p2@HIVEP1!1.79!187.51!HIVEP1;;chr12:72056749..72056767,+!p6@THAP2!1.79!67.18!THAP2;;chr14:35872962..35873025,-!p3@NFKBIA!1.78!142.99!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!1.76!302.82!MXD1;;chr2:61108695..61108753,+!p1@REL!1.75!363.79!REL;;chr2:192015701..192015743,-!p1@STAT4!1.74!72.80!STAT4;;chr12:72056773..72056796,+!p3@THAP2!1.74!69.79!THAP2;;chr14:35874077..35874091,-!p8@NFKBIA!1.74!54.15!NFKBIA;;chr3:39195075..39195088,-!p1@CSRNP1!1.73!314.85!CSRNP1;;chr19:45252008..45252024,+!p2@BCL3!1.73!165.85!BCL3;;chr6:106534230..106534254,+!p2@PRDM1!1.73!128.95!PRDM1;;chrX:153305787..153305807,-!p3@MECP2!1.73!53.14!MECP2;;chr10:104155480..104155534,+!p2@NFKB2!1.72!320.47!NFKB2;;chr7:50344289..50344323,+!p1@IKZF1!1.72!51.94!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.72!51.74!SPI1;;chr10:3827371..3827386,-!p2@KLF6!1.71!403.90!KLF6;;chr8:81397876..81397898,+!p5@ZBTB10!1.71!58.36!ZBTB10;;chr12:54778351..54778378,-!p6@ZNF385A!1.69!48.53!ZNF385A;;chr10:104154246..104154347,+!p3@NFKB2!1.68!272.14!NFKB2;;chr14:35872926..35872951,-!p4@NFKBIA!1.68!65.78!NFKBIA;;chr19:36391434..36391450,-!p1@NFKBID!1.66!86.23!NFKBID;;chr6:15246200..15246214,+!p2@JARID2!1.64!115.11!JARID2;;chr7:115670804..115670825,-!p1@TFEC!1.64!43.12!TFEC;;chr3:39195037..39195069,-!p2@CSRNP1!1.63!246.67!CSRNP1;;chr8:123794038..123794056,+!p5@ZHX2!1.61!39.91!ZHX2;;chr9:102584262..102584276,+!p1@NR4A3!1.60!84.63!NR4A3;;chr5:131826457..131826514,-!p1@IRF1!1.59!1418.65!IRF1;;chr2:185463247..185463263,+!p1@ZNF804A!1.59!65.18!ZNF804A;;chr8:81397820..81397836,+!p2@ZBTB10!1.59!47.13!ZBTB10;;chr16:31885093..31885165,+!p1@ZNF267!1.58!539.87!ZNF267;;chr7:149470641..149470694,-!p1@ZNF467!1.58!161.44!ZNF467;;chr4:83822199..83822239,+!p2@THAP9!1.57!42.92!THAP9;;chr8:81397846..81397860,+!p3@ZBTB10!1.56!44.12!ZBTB10;;chr7:50343634..50343717,+!p2@IKZF1!1.56!35.50!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.56!34.89!PLEK;;chr6:144385698..144385742,-!p2@PLAGL1!1.55!41.51!PLAGL1;;chrY:2803415..2803468,+!p1@ZFY!1.54!33.49!ZFY;;chr11:47400045..47400060,-!p6@SPI1!1.53!33.09!SPI1;;chr9:110252035..110252057,-!p1@KLF4!1.52!492.54!KLF4;;chr9:102584241..102584261,+!p4@NR4A3!1.52!49.13!NR4A3;;chr14:35872494..35872511,-!p5@NFKBIA!1.52!42.31!NFKBIA;;chr10:104154415..104154434,+!p5@NFKB2!1.52!32.49!NFKB2;;chr1:151030536..151030549,+!p8@MLLT11!1.52!32.09!MLLT11;;chr19:45250948..45250998,+!p3@BCL3!1.50!75.40!BCL3;;chr9:102584128..102584144,+!p3@NR4A3!1.50!57.36!NR4A3;;chr14:35872542..35872553,-!p10@NFKBIA!1.48!29.48!NFKBIA;;chr9:129567282..129567353,+!p1@ZBTB43!1.46!349.35!ZBTB43;;chr5:142782823..142782854,-!p3@NR3C1!1.45!38.10!NR3C1;;chr6:15246261..15246312,+!p1@JARID2!1.43!599.03!JARID2;;chr2:61108808..61108821,+!p3@REL!1.43!32.89!REL;;chr1:25256439..25256476,-!p3@RUNX3!1.43!25.67!RUNX3;;chr11:47399920..47399931,-!p7@SPI1!1.42!25.47!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!1.41!237.24!NFKBIE;;chr10:51572408..51572454,+!p3@NCOA4!1.41!139.98!NCOA4;;chr16:69600058..69600065,+!p9@NFAT5!1.41!24.67!NFAT5;;chr9:102584159..102584174,+!p2@NR4A3!1.40!43.32!NR4A3;;chr14:35872414..35872425,-!p7@NFKBIA!1.40!27.07!NFKBIA;;chr2:97202480..97202499,+!p1@ARID5A!1.39!228.22!ARID5A;;chr2:28618532..28618610,+!p4@FOSL2!1.39!39.51!FOSL2;;chr17:38497662..38497713,+!p4@RARA!1.38!26.67!RARA;;chrY:21906594..21906622,-!p1@KDM5D!1.38!23.26!KDM5D;;chr2:145271880..145271915,-!p42@ZEB2!1.38!23.06!ZEB2;;chr6:391743..391759,+!p1@IRF4!1.38!23.06!IRF4;;chr17:45810594..45810608,+!p1@TBX21!1.38!22.86!TBX21;;chr7:17338266..17338282,+!p1@AHR!1.37!233.63!AHR;;chr9:110250697..110250738,-!p2@KLF4!1.37!26.07!KLF4;;chr1:157108130..157108173,-!p1@ETV3!1.36!152.81!ETV3;;chrX:129244454..129244488,-!p1@ELF4!1.36!152.41!ELF4;;chr9:117150254..117150271,-!p1@AKNA!1.36!59.16!AKNA;;chr13:41593392..41593403,-!p7@ELF1!1.36!22.06!ELF1;;chr1:212782094..212782109,+!p1@ATF3!1.35!558.12!ATF3;;chr3:150126904..150126958,+!p7@TSC22D2!1.35!37.30!TSC22D2;;chr20:50159198..50159299,-!p1@NFATC2!1.35!30.68!NFATC2;;chr3:39195139..39195150,-!p3@CSRNP1!1.35!27.27!CSRNP1;;chr14:75745523..75745537,+!p1@FOS!1.34!2391.09!FOS;;chr10:104155659..104155676,+!p4@NFKB2!1.34!25.67!NFKB2;;chr19:45251395..45251432,+!p8@BCL3!1.34!21.06!BCL3;;chr2:145272041..145272072,-!p48@ZEB2!1.34!20.66!ZEB2;;chr6:143266297..143266356,-!p1@HIVEP2!1.33!95.66!HIVEP2;;chr22:38597987..38598021,+!p2@MAFF!1.32!117.72!MAFF;;chr3:187463179..187463201,-!p2@BCL6!1.32!80.62!BCL6;;chr15:57211634..57211657,+!p5@TCF12!1.32!30.28!TCF12;;chr21:34442439..34442455,+!p1@OLIG1!1.32!19.85!OLIG1;;chr19:45504688..45504782,+!p1@RELB!1.31!115.71!RELB;;chr14:62162285..62162296,+!p3@HIF1A!1.31!98.67!HIF1A;;chr2:208394817..208394834,+!p3@CREB1!1.31!76.41!CREB1;;chrX:106960180..106960197,-!p2@TSC22D3!1.31!72.40!TSC22D3;;chr21:36260295..36260310,-!p3@RUNX1!1.31!30.88!RUNX1;;chr10:8096631..8096660,+!p1@GATA3!1.31!23.26!GATA3;;chr2:145276113..145276149,-!p28@ZEB2!1.31!19.25!ZEB2;;chr10:3827389..3827408,-!p1@KLF6!1.30!1406.82!KLF6;;chr3:5020939..5020952,+!p2@BHLHE40!1.30!58.96!BHLHE40;;chr2:145277882..145277967,-!p3@ZEB2!1.30!32.49!ZEB2;;chr17:38498594..38498661,+!p2@RARA!1.29!61.37!RARA;;chr7:128577972..128578047,+!p1@IRF5!1.29!29.28!IRF5;;chr6:106546808..106546833,+!p3@PRDM1!1.28!22.86!PRDM1;;chr12:72056897..72056908,+!p12@THAP2!1.28!18.25!THAP2;;chr19:54041669..54041697,+!p2@ZNF331!1.28!17.85!ZNF331;;chr19:54058073..54058088,+!p1@ZNF331!1.28!17.85!ZNF331;;chr2:192015677..192015691,-!p3@STAT4!1.28!17.85!STAT4;;chr1:156470515..156470542,-!p2@MEF2D!1.27!91.25!MEF2D;;chr18:3448455..3448480,+!p5@TGIF1!1.26!31.08!TGIF1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.25!203.35!ZC3H12A;;chr21:36421535..36421610,-!p2@RUNX1!1.25!58.96!RUNX1;;chr2:8822176..8822196,+!p1@ID2!1.24!2248.50!ID2;;chr8:22550982..22550999,-!p1@EGR3!1.24!45.72!EGR3;;chr9:94186085..94186096,-!p3@NFIL3!1.24!26.87!NFIL3;;chr2:145277589..145277612,-!p12@ZEB2!1.24!16.24!ZEB2;;chr12:11802753..11802834,+!p2@ETV6!1.23!76.81!ETV6;;chr7:104654718..104654741,+!p3@MLL5!1.23!23.46!MLL5;;chr14:75746722..75746777,+!p2@FOS!1.23!20.66!FOS;;chr2:157189617..157189667,-!p4@NR4A2!1.23!16.04!NR4A2;;chr12:52445218..52445237,+!p1@NR4A1!1.22!192.32!NR4A1;;chr8:102218439..102218455,-!p3@ZNF706!1.22!15.64!ZNF706;;chr14:62162258..62162269,+!p2@HIF1A!1.21!145.39!HIF1A;;chr6:12012170..12012245,+!p1@HIVEP1!1.21!76.41!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.21!15.24!NFKB1;;chr5:142782862..142782881,-!p11@NR3C1!1.21!15.04!NR3C1;;chr15:60884706..60884743,-!p1@RORA!1.19!74.20!RORA;;chr14:64971288..64971316,-!p2@ZBTB25!1.19!44.32!ZBTB25;;chr2:231090433..231090469,+!p1@SP140!1.19!14.64!SP140;;chr3:63953435..63953499,+!p1@ATXN7!1.19!14.64!ATXN7;;chr9:117160738..117160782,-!p2@AKNA!1.18!57.96!AKNA;;chr19:42636586..42636607,-!p1@POU2F2!1.18!38.91!POU2F2;;chr3:101575889..101575903,+!p3@NFKBIZ!1.18!14.04!NFKBIZ;;chr12:57914286..57914304,-!p1@DDIT3!1.17!491.94!DDIT3;;chr9:94186101..94186122,-!p1@NFIL3!1.17!189.51!NFIL3;;chr19:33793430..33793447,-!p1@CEBPA!1.17!57.96!CEBPA;;chr21:40177892..40177903,+!p2@ETS2!1.17!55.55!ETS2;;chr15:57211660..57211687,+!p6@TCF12!1.17!22.46!TCF12;;chr2:145277632..145277638,-!p17@ZEB2!1.17!13.64!ZEB2;;chr4:106068026..106068084,+!p1@TET2!1.16!121.13!TET2;;chr18:77155922..77155939,+!p1@NFATC1!1.16!36.70!NFATC1;;chr2:61108771..61108789,+!p4@REL!1.16!20.46!REL;;chr7:106809470..106809481,+!p2@HBP1!1.16!18.85!HBP1;;chr8:53373491..53373506,-!p4@ST18!1.16!13.44!ST18;;chr19:16435625..16435682,+!p1@KLF2!1.15!419.54!KLF2;;chr4:38665769..38665801,+!p2@KLF3!1.15!117.92!KLF3;;chr2:208031542..208031595,-!p2@KLF7!1.15!92.25!KLF7;;chr4:83822246..83822277,+!p5@THAP9!1.15!13.24!THAP9;;chr3:5021113..5021180,+!p1@BHLHE40!1.14!878.59!BHLHE40;;chr17:38498402..38498445,+!p3@RARA!1.14!45.92!RARA;;chr20:56195474..56195506,-!p1@ZBP1!1.14!12.83!ZBP1;;chr2:61108878..61108891,+!p5@REL!1.14!12.83!REL;;chr10:8096772..8096787,+!p2@GATA3!1.13!14.84!GATA3;;chr2:97203110..97203159,+!p4@ARID5A!1.13!12.43!ARID5A;;chr7:104654690..104654704,+!p2@MLL5!1.12!24.47!MLL5;;chr2:145274981..145274994,-!p9@ZEB2!1.12!17.65!ZEB2;;chrX:153305741..153305753,-!p4@MECP2!1.12!12.03!MECP2;;chr10:114709999..114710031,+!p1@TCF7L2!1.11!281.56!TCF7L2;;chr4:140098339..140098392,-!p1@ELF2!1.11!97.26!ELF2;;chr6:91006518..91006570,-!p1@BACH2!1.11!27.68!BACH2;;chr10:3824332..3824425,-!p4@KLF6!1.11!19.05!KLF6;;chr19:12902289..12902307,+!p1@JUNB!1.10!2656.81!JUNB;;chr12:96588219..96588263,+!p2@ELK3!1.10!82.82!ELK3;;chr13:41593425..41593480,-!p1@ELF1!1.10!74.60!ELF1;;chr2:60780607..60780624,-!p2@BCL11A!1.10!35.70!BCL11A;;chr3:187463248..187463264,-!p1@BCL6!1.09!243.86!BCL6;;chr1:59249688..59249703,-!p3@JUN!1.09!68.59!JUN;;chr3:23986824..23986848,+!p2@NR1D2!1.09!63.37!NR1D2;;chr10:35416142..35416169,+!p3@CREM!1.09!29.88!CREM;;chr20:48807456..48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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.91!815.61!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.61!405.50!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.42!260.71!ZNF385A;;chr14:35873947..35873965,-!p1@NFKBIA!2.22!9737.03!NFKBIA;;chr11:47399947..47399961,-!p3@SPI1!2.22!164.85!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.19!153.82!IRF8;;chr3:101546827..101546847,+!p2@NFKBIZ!2.16!199.34!NFKBIZ;;chr2:145271342..145271377,-!p5@ZEB2!2.14!136.77!ZEB2;;chr2:145277640..145277771,-!p1@ZEB2!2.13!1656.70!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!2.11!170.06!THAP2;;chr20:39317868..39317884,-!p1@MAFB!2.08!1332.82!MAFB;;chr11:47400062..47400077,-!p2@SPI1!2.01!102.48!SPI1;;chr19:45971246..45971265,+!p1@FOSB!1.98!1638.65!FOSB;;chr6:106534192..106534224,+!p1@PRDM1!1.93!228.82!PRDM1;;chr14:35872453..35872485,-!p2@NFKBIA!1.93!198.34!NFKBIA;;chr1:25256756..25256774,-!p1@RUNX3!1.91!145.19!RUNX3;;chr11:47399996..47400014,-!p4@SPI1!1.91!79.82!SPI1;;chr8:123793988..123794016,+!p1@ZHX2!1.89!131.16!ZHX2;;chr2:145275162..145275202,-!p2@ZEB2!1.86!397.08!ZEB2;;chr7:17338324..17338341,+!p3@AHR!1.86!229.02!AHR;;chr3:101568349..101568365,+!p1@NFKBIZ!1.84!3280.31!NFKBIZ;;chr4:103422499..103422632,+!p1@NFKB1!1.83!1314.17!NFKB1;;chr2:157189180..157189290,-!p1@NR4A2!1.80!308.04!NR4A2;;chr6:12011943..12012015,+!p2@HIVEP1!1.79!187.51!HIVEP1;;chr12:72056749..72056767,+!p6@THAP2!1.79!67.18!THAP2;;chr14:35872962..35873025,-!p3@NFKBIA!1.78!142.99!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!1.76!302.82!MXD1;;chr2:61108695..61108753,+!p1@REL!1.75!363.79!REL;;chr2:192015701..192015743,-!p1@STAT4!1.74!72.80!STAT4;;chr12:72056773..72056796,+!p3@THAP2!1.74!69.79!THAP2;;chr14:35874077..35874091,-!p8@NFKBIA!1.74!54.15!NFKBIA;;chr3:39195075..39195088,-!p1@CSRNP1!1.73!314.85!CSRNP1;;chr19:45252008..45252024,+!p2@BCL3!1.73!165.85!BCL3;;chr6:106534230..106534254,+!p2@PRDM1!1.73!128.95!PRDM1;;chrX:153305787..153305807,-!p3@MECP2!1.73!53.14!MECP2;;chr10:104155480..104155534,+!p2@NFKB2!1.72!320.47!NFKB2;;chr7:50344289..50344323,+!p1@IKZF1!1.72!51.94!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.72!51.74!SPI1;;chr10:3827371..3827386,-!p2@KLF6!1.71!403.90!KLF6;;chr8:81397876..81397898,+!p5@ZBTB10!1.71!58.36!ZBTB10;;chr12:54778351..54778378,-!p6@ZNF385A!1.69!48.53!ZNF385A;;chr10:104154246..104154347,+!p3@NFKB2!1.68!272.14!NFKB2;;chr14:35872926..35872951,-!p4@NFKBIA!1.68!65.78!NFKBIA;;chr19:36391434..36391450,-!p1@NFKBID!1.66!86.23!NFKBID;;chr6:15246200..15246214,+!p2@JARID2!1.64!115.11!JARID2;;chr7:115670804..115670825,-!p1@TFEC!1.64!43.12!TFEC;;chr3:39195037..39195069,-!p2@CSRNP1!1.63!246.67!CSRNP1;;chr8:123794038..123794056,+!p5@ZHX2!1.61!39.91!ZHX2;;chr9:102584262..102584276,+!p1@NR4A3!1.60!84.63!NR4A3;;chr5:131826457..131826514,-!p1@IRF1!1.59!1418.65!IRF1;;chr2:185463247..185463263,+!p1@ZNF804A!1.59!65.18!ZNF804A;;chr8:81397820..81397836,+!p2@ZBTB10!1.59!47.13!ZBTB10;;chr16:31885093..31885165,+!p1@ZNF267!1.58!539.87!ZNF267;;chr7:149470641..149470694,-!p1@ZNF467!1.58!161.44!ZNF467;;chr4:83822199..83822239,+!p2@THAP9!1.57!42.92!THAP9;;chr8:81397846..81397860,+!p3@ZBTB10!1.56!44.12!ZBTB10;;chr7:50343634..50343717,+!p2@IKZF1!1.56!35.50!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.56!34.89!PLEK;;chr6:144385698..144385742,-!p2@PLAGL1!1.55!41.51!PLAGL1;;chrY:2803415..2803468,+!p1@ZFY!1.54!33.49!ZFY;;chr11:47400045..47400060,-!p6@SPI1!1.53!33.09!SPI1;;chr9:110252035..110252057,-!p1@KLF4!1.52!492.54!KLF4;;chr9:102584241..102584261,+!p4@NR4A3!1.52!49.13!NR4A3;;chr14:35872494..35872511,-!p5@NFKBIA!1.52!42.31!NFKBIA;;chr10:104154415..104154434,+!p5@NFKB2!1.52!32.49!NFKB2;;chr1:151030536..151030549,+!p8@MLLT11!1.52!32.09!MLLT11;;chr19:45250948..45250998,+!p3@BCL3!1.50!75.40!BCL3;;chr9:102584128..102584144,+!p3@NR4A3!1.50!57.36!NR4A3;;chr14:35872542..35872553,-!p10@NFKBIA!1.48!29.48!NFKBIA;;chr9:129567282..129567353,+!p1@ZBTB43!1.46!349.35!ZBTB43;;chr5:142782823..142782854,-!p3@NR3C1!1.45!38.10!NR3C1;;chr6:15246261..15246312,+!p1@JARID2!1.43!599.03!JARID2;;chr2:61108808..61108821,+!p3@REL!1.43!32.89!REL;;chr1:25256439..25256476,-!p3@RUNX3!1.43!25.67!RUNX3;;chr11:47399920..47399931,-!p7@SPI1!1.42!25.47!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!1.41!237.24!NFKBIE;;chr10:51572408..51572454,+!p3@NCOA4!1.41!139.98!NCOA4;;chr16:69600058..69600065,+!p9@NFAT5!1.41!24.67!NFAT5;;chr9:102584159..102584174,+!p2@NR4A3!1.40!43.32!NR4A3;;chr14:35872414..35872425,-!p7@NFKBIA!1.40!27.07!NFKBIA;;chr2:97202480..97202499,+!p1@ARID5A!1.39!228.22!ARID5A;;chr2:28618532..28618610,+!p4@FOSL2!1.39!39.51!FOSL2;;chr17:38497662..38497713,+!p4@RARA!1.38!26.67!RARA;;chrY:21906594..21906622,-!p1@KDM5D!1.38!23.26!KDM5D;;chr2:145271880..145271915,-!p42@ZEB2!1.38!23.06!ZEB2;;chr6:391743..391759,+!p1@IRF4!1.38!23.06!IRF4;;chr17:45810594..45810608,+!p1@TBX21!1.38!22.86!TBX21;;chr7:17338266..17338282,+!p1@AHR!1.37!233.63!AHR;;chr9:110250697..110250738,-!p2@KLF4!1.37!26.07!KLF4;;chr1:157108130..157108173,-!p1@ETV3!1.36!152.81!ETV3;;chrX:129244454..129244488,-!p1@ELF4!1.36!152.41!ELF4;;chr9:117150254..117150271,-!p1@AKNA!1.36!59.16!AKNA;;chr13:41593392..41593403,-!p7@ELF1!1.36!22.06!ELF1;;chr1:212782094..212782109,+!p1@ATF3!1.35!558.12!ATF3;;chr3:150126904..150126958,+!p7@TSC22D2!1.35!37.30!TSC22D2;;chr20:50159198..50159299,-!p1@NFATC2!1.35!30.68!NFATC2;;chr3:39195139..39195150,-!p3@CSRNP1!1.35!27.27!CSRNP1;;chr14:75745523..75745537,+!p1@FOS!1.34!2391.09!FOS;;chr10:104155659..104155676,+!p4@NFKB2!1.34!25.67!NFKB2;;chr19:45251395..45251432,+!p8@BCL3!1.34!21.06!BCL3;;chr2:145272041..145272072,-!p48@ZEB2!1.34!20.66!ZEB2;;chr6:143266297..143266356,-!p1@HIVEP2!1.33!95.66!HIVEP2;;chr22:38597987..38598021,+!p2@MAFF!1.32!117.72!MAFF;;chr3:187463179..187463201,-!p2@BCL6!1.32!80.62!BCL6;;chr15:57211634..57211657,+!p5@TCF12!1.32!30.28!TCF12;;chr21:34442439..34442455,+!p1@OLIG1!1.32!19.85!OLIG1;;chr19:45504688..45504782,+!p1@RELB!1.31!115.71!RELB;;chr14:62162285..62162296,+!p3@HIF1A!1.31!98.67!HIF1A;;chr2:208394817..208394834,+!p3@CREB1!1.31!76.41!CREB1;;chrX:106960180..106960197,-!p2@TSC22D3!1.31!72.40!TSC22D3;;chr21:36260295..36260310,-!p3@RUNX1!1.31!30.88!RUNX1;;chr10:8096631..8096660,+!p1@GATA3!1.31!23.26!GATA3;;chr2:145276113..145276149,-!p28@ZEB2!1.31!19.25!ZEB2;;chr10:3827389..3827408,-!p1@KLF6!1.30!1406.82!KLF6;;chr3:5020939..5020952,+!p2@BHLHE40!1.30!58.96!BHLHE40;;chr2:145277882..145277967,-!p3@ZEB2!1.30!32.49!ZEB2;;chr17:38498594..38498661,+!p2@RARA!1.29!61.37!RARA;;chr7:128577972..128578047,+!p1@IRF5!1.29!29.28!IRF5;;chr6:106546808..106546833,+!p3@PRDM1!1.28!22.86!PRDM1;;chr12:72056897..72056908,+!p12@THAP2!1.28!18.25!THAP2;;chr19:54041669..54041697,+!p2@ZNF331!1.28!17.85!ZNF331;;chr19:54058073..54058088,+!p1@ZNF331!1.28!17.85!ZNF331;;chr2:192015677..192015691,-!p3@STAT4!1.28!17.85!STAT4;;chr1:156470515..156470542,-!p2@MEF2D!1.27!91.25!MEF2D;;chr18:3448455..3448480,+!p5@TGIF1!1.26!31.08!TGIF1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.25!203.35!ZC3H12A;;chr21:36421535..36421610,-!p2@RUNX1!1.25!58.96!RUNX1;;chr2:8822176..8822196,+!p1@ID2!1.24!2248.50!ID2;;chr8:22550982..22550999,-!p1@EGR3!1.24!45.72!EGR3;;chr9:94186085..94186096,-!p3@NFIL3!1.24!26.87!NFIL3;;chr2:145277589..145277612,-!p12@ZEB2!1.24!16.24!ZEB2;;chr12:11802753..11802834,+!p2@ETV6!1.23!76.81!ETV6;;chr7:104654718..104654741,+!p3@MLL5!1.23!23.46!MLL5;;chr14:75746722..75746777,+!p2@FOS!1.23!20.66!FOS;;chr2:157189617..157189667,-!p4@NR4A2!1.23!16.04!NR4A2;;chr12:52445218..52445237,+!p1@NR4A1!1.22!192.32!NR4A1;;chr8:102218439..102218455,-!p3@ZNF706!1.22!15.64!ZNF706;;chr14:62162258..62162269,+!p2@HIF1A!1.21!145.39!HIF1A;;chr6:12012170..12012245,+!p1@HIVEP1!1.21!76.41!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.21!15.24!NFKB1;;chr5:142782862..142782881,-!p11@NR3C1!1.21!15.04!NR3C1;;chr15:60884706..60884743,-!p1@RORA!1.19!74.20!RORA;;chr14:64971288..64971316,-!p2@ZBTB25!1.19!44.32!ZBTB25;;chr2:231090433..231090469,+!p1@SP140!1.19!14.64!SP140;;chr3:63953435..63953499,+!p1@ATXN7!1.19!14.64!ATXN7;;chr9:117160738..117160782,-!p2@AKNA!1.18!57.96!AKNA;;chr19:42636586..42636607,-!p1@POU2F2!1.18!38.91!POU2F2;;chr3:101575889..101575903,+!p3@NFKBIZ!1.18!14.04!NFKBIZ;;chr12:57914286..57914304,-!p1@DDIT3!1.17!491.94!DDIT3;;chr9:94186101..94186122,-!p1@NFIL3!1.17!189.51!NFIL3;;chr19:33793430..33793447,-!p1@CEBPA!1.17!57.96!CEBPA;;chr21:40177892..40177903,+!p2@ETS2!1.17!55.55!ETS2;;chr15:57211660..57211687,+!p6@TCF12!1.17!22.46!TCF12;;chr2:145277632..145277638,-!p17@ZEB2!1.17!13.64!ZEB2;;chr4:106068026..106068084,+!p1@TET2!1.16!121.13!TET2;;chr18:77155922..77155939,+!p1@NFATC1!1.16!36.70!NFATC1;;chr2:61108771..61108789,+!p4@REL!1.16!20.46!REL;;chr7:106809470..106809481,+!p2@HBP1!1.16!18.85!HBP1;;chr8:53373491..53373506,-!p4@ST18!1.16!13.44!ST18;;chr19:16435625..16435682,+!p1@KLF2!1.15!419.54!KLF2;;chr4:38665769..38665801,+!p2@KLF3!1.15!117.92!KLF3;;chr2:208031542..208031595,-!p2@KLF7!1.15!92.25!KLF7;;chr4:83822246..83822277,+!p5@THAP9!1.15!13.24!THAP9;;chr3:5021113..5021180,+!p1@BHLHE40!1.14!878.59!BHLHE40;;chr17:38498402..38498445,+!p3@RARA!1.14!45.92!RARA;;chr20:56195474..56195506,-!p1@ZBP1!1.14!12.83!ZBP1;;chr2:61108878..61108891,+!p5@REL!1.14!12.83!REL;;chr10:8096772..8096787,+!p2@GATA3!1.13!14.84!GATA3;;chr2:97203110..97203159,+!p4@ARID5A!1.13!12.43!ARID5A;;chr7:104654690..104654704,+!p2@MLL5!1.12!24.47!MLL5;;chr2:145274981..145274994,-!p9@ZEB2!1.12!17.65!ZEB2;;chrX:153305741..153305753,-!p4@MECP2!1.12!12.03!MECP2;;chr10:114709999..114710031,+!p1@TCF7L2!1.11!281.56!TCF7L2;;chr4:140098339..140098392,-!p1@ELF2!1.11!97.26!ELF2;;chr6:91006518..91006570,-!p1@BACH2!1.11!27.68!BACH2;;chr10:3824332..3824425,-!p4@KLF6!1.11!19.05!KLF6;;chr19:12902289..12902307,+!p1@JUNB!1.10!2656.81!JUNB;;chr12:96588219..96588263,+!p2@ELK3!1.10!82.82!ELK3;;chr13:41593425..41593480,-!p1@ELF1!1.10!74.60!ELF1;;chr2:60780607..60780624,-!p2@BCL11A!1.10!35.70!BCL11A;;chr3:187463248..187463264,-!p1@BCL6!1.09!243.86!BCL6;;chr1:59249688..59249703,-!p3@JUN!1.09!68.59!JUN;;chr3:23986824..23986848,+!p2@NR1D2!1.09!63.37!NR1D2;;chr10:35416142..35416169,+!p3@CREM!1.09!29.88!CREM;;chr20:48807456..48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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002397;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11305-117B9 | |id=FF:11305-117B9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000024 | ||
|is_obsolete= | |||
|library_id=CNhs11954 | |||
|library_id_phase_based=2:CNhs11954 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11305 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.CTTGTA.11305 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11305 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.CTTGTA.11305 | |||
|name=CD14+ Monocytes, donor2 | |name=CD14+ Monocytes, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11954,LSID836,release011,COMPLETED | |profile_hcage=CNhs11954,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=3H100-30-10 | |rna_catalog_number=3H100-30-10 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117B9 | |rna_tube_id=117B9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.CTTGTA | |||
|sample_age=57 | |sample_age=57 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=NFKB1_REL_RELA:5.08230965593;PAX2:4.41836472384;BACH2:4.32448999431;FOS_FOS{B,L1}_JUN{B,D}:4.21059998901;NFE2:4.1175926303;FOSL2:4.02496492467;PAX3,7:3.96371083425;RUNX1..3:3.54740982429;NFIL3:3.52722077513;SPIB:3.4791065025;SPI1:3.4743005652;CREB1:3.46074257127;CEBPA,B_DDIT3:3.24569162443;ATF5_CREB3:3.19848594365;ETS1,2:3.18027418374;ATF4:3.10469233613;HLF:2.96317441423;RXRA_VDR{dimer}:2.94756982991;TGIF1:2.66078904453;HMGA1,2:2.56870515411;NANOG{mouse}:2.42008304276;NFATC1..3:2.39288527589;DMAP1_NCOR{1,2}_SMARC:2.36722411987;NFE2L2:2.34449376982;IRF1,2:2.33345403137;FOXN1:2.29228965811;MAFB:2.20530963641;BPTF:2.1988312344;NFE2L1:2.1693149549;FOXP3:2.06441199174;JUN:2.01545368279;FOXO1,3,4:1.97186414197;PITX1..3:1.94381516015;PAX8:1.92707973226;STAT2,4,6:1.88402584618;RFX2..5_RFXANK_RFXAP:1.84386237415;EP300:1.53749603885;ELF1,2,4:1.47703659239;IRF7:1.47691790397;SREBF1,2:1.47200526651;HIF1A:1.41758841898;FOX{D1,D2}:1.32886475019;FOXP1:1.30893613073;HMX1:1.30468838881;ATF2:1.15325570418;RORA:0.974713797258;RBPJ:0.902864513382;ATF6:0.835717020959;PDX1:0.648489413143;T:0.552910050878;HOX{A5,B5}:0.478892387888;HBP1_HMGB_SSRP1_UBTF:0.40331126534;HSF1,2:0.38547436618;NKX2-1,4:0.368431361393;SMAD1..7,9:0.357956955679;EGR1..3:0.35341250674;GATA4:0.333865043048;PPARG:0.270494508224;ZBTB16:0.202659964923;GLI1..3:0.0982624095947;RXR{A,B,G}:0.0823156280762;FOXL1:0.0755093948109;XBP1:-0.000291299714892;ALX4:-0.00130590285284;BREu{core}:-0.0443068387715;TFCP2:-0.0593068828367;IKZF2:-0.111772896466;MEF2{A,B,C,D}:-0.189045453915;FOX{F1,F2,J1}:-0.190513732229;SOX2:-0.197018847529;HOXA9_MEIS1:-0.213075481998;IKZF1:-0.219100282744;NANOG:-0.224545824715;ESR1:-0.271500522766;TFAP2{A,C}:-0.31106134335;POU2F1..3:-0.31890956582;MYB:-0.374937297488;TFDP1:-0.39418224385;TBX4,5:-0.410709178096;TLX2:-0.418007238004;FOXD3:-0.491098318429;ZNF384:-0.503747260213;MTE{core}:-0.520366442969;SRF:-0.523326430461;NKX6-1,2:-0.536443316948;NR1H4:-0.538546176373;RREB1:-0.540729414507;POU5F1:-0.581891072662;AHR_ARNT_ARNT2:-0.590577851567;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.641900011528;MYFfamily:-0.657501712245;ESRRA:-0.678341720931;TFAP2B:-0.685013603042;NKX3-1:-0.687225602219;ZFP161:-0.68955121157;TOPORS:-0.749493043806;EN1,2:-0.763415796958;FOXM1:-0.785715086156;MED-1{core}:-0.788913133253;MZF1:-0.820792327228;RFX1:-0.857847094305;ZNF238:-0.921976143801;TFAP4:-0.930342104912;CDX1,2,4:-0.960131413639;PRDM1:-0.982997092915;PATZ1:-0.998380007124;HNF4A_NR2F1,2:-1.0007047165;HES1:-1.01056376144;SP1:-1.01969919133;OCT4_SOX2{dimer}:-1.02719679905;GCM1,2:-1.05877315501;NHLH1,2:-1.07870733112;STAT1,3:-1.14501575957;VSX1,2:-1.17814918019;TEF:-1.17985289639;REST:-1.20902180052;NR6A1:-1.21986741576;STAT5{A,B}:-1.22142247284;E2F1..5:-1.26922134838;MTF1:-1.27818612441;GATA6:-1.29220912468;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36111563106;HIC1:-1.38759642307;HNF1A:-1.4275302304;DBP:-1.45524875683;TAL1_TCF{3,4,12}:-1.46503108619;NR5A1,2:-1.4811854755;TBP:-1.48618832639;PAX6:-1.49777804591;FOXA2:-1.50934686066;CUX2:-1.51618558936;XCPE1{core}:-1.57071866192;PAX4:-1.59613947381;ZEB1:-1.59786219366;GZF1:-1.60385772831;MAZ:-1.61799977164;EBF1:-1.62985591695;MYOD1:-1.65781457092;TP53:-1.67558513848;SOX{8,9,10}:-1.69632706858;PRRX1,2:-1.71042244183;PAX5:-1.72880363428;SOX5:-1.77075400433;CRX:-1.83135664094;NR3C1:-1.86363844077;TEAD1:-1.88904837761;GTF2I:-1.9004463929;SPZ1:-1.91703769619;PAX1,9:-1.92006667353;NFY{A,B,C}:-1.94677196172;ZNF423:-1.96703939709;NKX2-3_NKX2-5:-1.97908565521;GTF2A1,2:-1.98827515594;ZNF148:-2.0144936474;SNAI1..3:-2.03016909559;ADNP_IRX_SIX_ZHX:-2.08731527243;NKX2-2,8:-2.09114181371;FOX{I1,J2}:-2.12634714699;LEF1_TCF7_TCF7L1,2:-2.12675761733;TLX1..3_NFIC{dimer}:-2.1269354876;NFIX:-2.14718596311;ZBTB6:-2.15872224595;AIRE:-2.16325862978;ZIC1..3:-2.16408956335;POU3F1..4:-2.20988204258;bHLH_family:-2.24783700091;POU6F1:-2.26454873063;ELK1,4_GABP{A,B1}:-2.28251089885;HOX{A4,D4}:-2.32280396702;HOX{A6,A7,B6,B7}:-2.37257364268;ALX1:-2.3980663675;MYBL2:-2.45362089229;NRF1:-2.48180476126;PBX1:-2.49357880482;CDC5L:-2.4948067781;LMO2:-2.59217185798;UFEwm:-2.66037360557;FOXQ1:-2.69331047462;ONECUT1,2:-2.71178550209;SOX17:-2.71493584647;KLF4:-2.76535775928;ARID5B:-2.83094260926;GFI1:-2.90158672203;GFI1B:-3.01520443551;LHX3,4:-3.04930490924;AR:-3.11532178074;EVI1:-3.15947788815;NKX3-2:-3.16922513239;ZNF143:-3.37854469335;YY1:-3.4660338723;HAND1,2:-3.80661182104;POU1F1:-3.90774299165 | |top_motifs=NFKB1_REL_RELA:5.08230965593;PAX2:4.41836472384;BACH2:4.32448999431;FOS_FOS{B,L1}_JUN{B,D}:4.21059998901;NFE2:4.1175926303;FOSL2:4.02496492467;PAX3,7:3.96371083425;RUNX1..3:3.54740982429;NFIL3:3.52722077513;SPIB:3.4791065025;SPI1:3.4743005652;CREB1:3.46074257127;CEBPA,B_DDIT3:3.24569162443;ATF5_CREB3:3.19848594365;ETS1,2:3.18027418374;ATF4:3.10469233613;HLF:2.96317441423;RXRA_VDR{dimer}:2.94756982991;TGIF1:2.66078904453;HMGA1,2:2.56870515411;NANOG{mouse}:2.42008304276;NFATC1..3:2.39288527589;DMAP1_NCOR{1,2}_SMARC:2.36722411987;NFE2L2:2.34449376982;IRF1,2:2.33345403137;FOXN1:2.29228965811;MAFB:2.20530963641;BPTF:2.1988312344;NFE2L1:2.1693149549;FOXP3:2.06441199174;JUN:2.01545368279;FOXO1,3,4:1.97186414197;PITX1..3:1.94381516015;PAX8:1.92707973226;STAT2,4,6:1.88402584618;RFX2..5_RFXANK_RFXAP:1.84386237415;EP300:1.53749603885;ELF1,2,4:1.47703659239;IRF7:1.47691790397;SREBF1,2:1.47200526651;HIF1A:1.41758841898;FOX{D1,D2}:1.32886475019;FOXP1:1.30893613073;HMX1:1.30468838881;ATF2:1.15325570418;RORA:0.974713797258;RBPJ:0.902864513382;ATF6:0.835717020959;PDX1:0.648489413143;T:0.552910050878;HOX{A5,B5}:0.478892387888;HBP1_HMGB_SSRP1_UBTF:0.40331126534;HSF1,2:0.38547436618;NKX2-1,4:0.368431361393;SMAD1..7,9:0.357956955679;EGR1..3:0.35341250674;GATA4:0.333865043048;PPARG:0.270494508224;ZBTB16:0.202659964923;GLI1..3:0.0982624095947;RXR{A,B,G}:0.0823156280762;FOXL1:0.0755093948109;XBP1:-0.000291299714892;ALX4:-0.00130590285284;BREu{core}:-0.0443068387715;TFCP2:-0.0593068828367;IKZF2:-0.111772896466;MEF2{A,B,C,D}:-0.189045453915;FOX{F1,F2,J1}:-0.190513732229;SOX2:-0.197018847529;HOXA9_MEIS1:-0.213075481998;IKZF1:-0.219100282744;NANOG:-0.224545824715;ESR1:-0.271500522766;TFAP2{A,C}:-0.31106134335;POU2F1..3:-0.31890956582;MYB:-0.374937297488;TFDP1:-0.39418224385;TBX4,5:-0.410709178096;TLX2:-0.418007238004;FOXD3:-0.491098318429;ZNF384:-0.503747260213;MTE{core}:-0.520366442969;SRF:-0.523326430461;NKX6-1,2:-0.536443316948;NR1H4:-0.538546176373;RREB1:-0.540729414507;POU5F1:-0.581891072662;AHR_ARNT_ARNT2:-0.590577851567;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.641900011528;MYFfamily:-0.657501712245;ESRRA:-0.678341720931;TFAP2B:-0.685013603042;NKX3-1:-0.687225602219;ZFP161:-0.68955121157;TOPORS:-0.749493043806;EN1,2:-0.763415796958;FOXM1:-0.785715086156;MED-1{core}:-0.788913133253;MZF1:-0.820792327228;RFX1:-0.857847094305;ZNF238:-0.921976143801;TFAP4:-0.930342104912;CDX1,2,4:-0.960131413639;PRDM1:-0.982997092915;PATZ1:-0.998380007124;HNF4A_NR2F1,2:-1.0007047165;HES1:-1.01056376144;SP1:-1.01969919133;OCT4_SOX2{dimer}:-1.02719679905;GCM1,2:-1.05877315501;NHLH1,2:-1.07870733112;STAT1,3:-1.14501575957;VSX1,2:-1.17814918019;TEF:-1.17985289639;REST:-1.20902180052;NR6A1:-1.21986741576;STAT5{A,B}:-1.22142247284;E2F1..5:-1.26922134838;MTF1:-1.27818612441;GATA6:-1.29220912468;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36111563106;HIC1:-1.38759642307;HNF1A:-1.4275302304;DBP:-1.45524875683;TAL1_TCF{3,4,12}:-1.46503108619;NR5A1,2:-1.4811854755;TBP:-1.48618832639;PAX6:-1.49777804591;FOXA2:-1.50934686066;CUX2:-1.51618558936;XCPE1{core}:-1.57071866192;PAX4:-1.59613947381;ZEB1:-1.59786219366;GZF1:-1.60385772831;MAZ:-1.61799977164;EBF1:-1.62985591695;MYOD1:-1.65781457092;TP53:-1.67558513848;SOX{8,9,10}:-1.69632706858;PRRX1,2:-1.71042244183;PAX5:-1.72880363428;SOX5:-1.77075400433;CRX:-1.83135664094;NR3C1:-1.86363844077;TEAD1:-1.88904837761;GTF2I:-1.9004463929;SPZ1:-1.91703769619;PAX1,9:-1.92006667353;NFY{A,B,C}:-1.94677196172;ZNF423:-1.96703939709;NKX2-3_NKX2-5:-1.97908565521;GTF2A1,2:-1.98827515594;ZNF148:-2.0144936474;SNAI1..3:-2.03016909559;ADNP_IRX_SIX_ZHX:-2.08731527243;NKX2-2,8:-2.09114181371;FOX{I1,J2}:-2.12634714699;LEF1_TCF7_TCF7L1,2:-2.12675761733;TLX1..3_NFIC{dimer}:-2.1269354876;NFIX:-2.14718596311;ZBTB6:-2.15872224595;AIRE:-2.16325862978;ZIC1..3:-2.16408956335;POU3F1..4:-2.20988204258;bHLH_family:-2.24783700091;POU6F1:-2.26454873063;ELK1,4_GABP{A,B1}:-2.28251089885;HOX{A4,D4}:-2.32280396702;HOX{A6,A7,B6,B7}:-2.37257364268;ALX1:-2.3980663675;MYBL2:-2.45362089229;NRF1:-2.48180476126;PBX1:-2.49357880482;CDC5L:-2.4948067781;LMO2:-2.59217185798;UFEwm:-2.66037360557;FOXQ1:-2.69331047462;ONECUT1,2:-2.71178550209;SOX17:-2.71493584647;KLF4:-2.76535775928;ARID5B:-2.83094260926;GFI1:-2.90158672203;GFI1B:-3.01520443551;LHX3,4:-3.04930490924;AR:-3.11532178074;EVI1:-3.15947788815;NKX3-2:-3.16922513239;ZNF143:-3.37854469335;YY1:-3.4660338723;HAND1,2:-3.80661182104;POU1F1:-3.90774299165 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11305-117B9;search_select_hide=table117:FF:11305-117B9 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | CD14+ Monocytes, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11954 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11954
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11954
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.339 |
| 10 | 10 | 0.0132 |
| 100 | 100 | 0.694 |
| 101 | 101 | 0.992 |
| 102 | 102 | 0.952 |
| 103 | 103 | 0.677 |
| 104 | 104 | 0.489 |
| 105 | 105 | 0.111 |
| 106 | 106 | 5.49669e-4 |
| 107 | 107 | 0.32 |
| 108 | 108 | 0.621 |
| 109 | 109 | 0.435 |
| 11 | 11 | 0.417 |
| 110 | 110 | 0.425 |
| 111 | 111 | 0.0661 |
| 112 | 112 | 0.579 |
| 113 | 113 | 0.161 |
| 114 | 114 | 0.125 |
| 115 | 115 | 0.172 |
| 116 | 116 | 0.691 |
| 117 | 117 | 0.0623 |
| 118 | 118 | 0.167 |
| 119 | 119 | 0.472 |
| 12 | 12 | 0.234 |
| 120 | 120 | 0.292 |
| 121 | 121 | 0.633 |
| 122 | 122 | 0.698 |
| 123 | 123 | 0.00612 |
| 124 | 124 | 0.751 |
| 125 | 125 | 0.341 |
| 126 | 126 | 0.204 |
| 127 | 127 | 0.775 |
| 128 | 128 | 0.0775 |
| 129 | 129 | 0.955 |
| 13 | 13 | 0.166 |
| 130 | 130 | 0.181 |
| 131 | 131 | 0.966 |
| 132 | 132 | 0.0527 |
| 133 | 133 | 0.498 |
| 134 | 134 | 0.808 |
| 135 | 135 | 0.613 |
| 136 | 136 | 0.932 |
| 137 | 137 | 0.0117 |
| 138 | 138 | 0.278 |
| 139 | 139 | 0.0625 |
| 14 | 14 | 0.33 |
| 140 | 140 | 0.255 |
| 141 | 141 | 0.398 |
| 142 | 142 | 0.248 |
| 143 | 143 | 0.0319 |
| 144 | 144 | 0.624 |
| 145 | 145 | 0.609 |
| 146 | 146 | 0.738 |
| 147 | 147 | 0.47 |
| 148 | 148 | 0.0464 |
| 149 | 149 | 0.796 |
| 15 | 15 | 0.185 |
| 150 | 150 | 0.581 |
| 151 | 151 | 0.192 |
| 152 | 152 | 0.243 |
| 153 | 153 | 0.744 |
| 154 | 154 | 0.413 |
| 155 | 155 | 0.467 |
| 156 | 156 | 0.574 |
| 157 | 157 | 0.467 |
| 158 | 158 | 0.0173 |
| 159 | 159 | 0.486 |
| 16 | 16 | 0.787 |
| 160 | 160 | 0.738 |
| 161 | 161 | 0.549 |
| 162 | 162 | 0.0987 |
| 163 | 163 | 0.189 |
| 164 | 164 | 0.0586 |
| 165 | 165 | 0.29 |
| 166 | 166 | 0.594 |
| 167 | 167 | 0.225 |
| 168 | 168 | 0.135 |
| 169 | 169 | 0.0527 |
| 17 | 17 | 0.346 |
| 18 | 18 | 0.233 |
| 19 | 19 | 0.827 |
| 2 | 2 | 0.35 |
| 20 | 20 | 0.259 |
| 21 | 21 | 0.869 |
| 22 | 22 | 0.424 |
| 23 | 23 | 0.0509 |
| 24 | 24 | 0.758 |
| 25 | 25 | 0.357 |
| 26 | 26 | 0.176 |
| 27 | 27 | 0.521 |
| 28 | 28 | 0.41 |
| 29 | 29 | 0.269 |
| 3 | 3 | 0.259 |
| 30 | 30 | 0.228 |
| 31 | 31 | 0.877 |
| 32 | 32 | 0.12 |
| 33 | 33 | 0.335 |
| 34 | 34 | 0.705 |
| 35 | 35 | 0.134 |
| 36 | 36 | 0.0999 |
| 37 | 37 | 0.162 |
| 38 | 38 | 0.484 |
| 39 | 39 | 0.8 |
| 4 | 4 | 0.864 |
| 40 | 40 | 0.24 |
| 41 | 41 | 0.0057 |
| 42 | 42 | 0.456 |
| 43 | 43 | 0.0282 |
| 44 | 44 | 0.448 |
| 45 | 45 | 0.99 |
| 46 | 46 | 0.352 |
| 47 | 47 | 0.899 |
| 48 | 48 | 0.821 |
| 49 | 49 | 0.0899 |
| 5 | 5 | 0.251 |
| 50 | 50 | 0.9 |
| 51 | 51 | 0.475 |
| 52 | 52 | 0.402 |
| 53 | 53 | 0.201 |
| 54 | 54 | 0.534 |
| 55 | 55 | 0.933 |
| 56 | 56 | 0.918 |
| 57 | 57 | 0.832 |
| 58 | 58 | 0.204 |
| 59 | 59 | 0.514 |
| 6 | 6 | 0.936 |
| 60 | 60 | 0.0629 |
| 61 | 61 | 0.444 |
| 62 | 62 | 0.13 |
| 63 | 63 | 0.717 |
| 64 | 64 | 0.607 |
| 65 | 65 | 0.305 |
| 66 | 66 | 0.0459 |
| 67 | 67 | 0.629 |
| 68 | 68 | 0.214 |
| 69 | 69 | 0.205 |
| 7 | 7 | 0.262 |
| 70 | 70 | 0.0728 |
| 71 | 71 | 0.0543 |
| 72 | 72 | 0.252 |
| 73 | 73 | 0.209 |
| 74 | 74 | 0.0439 |
| 75 | 75 | 0.211 |
| 76 | 76 | 0.0681 |
| 77 | 77 | 0.998 |
| 78 | 78 | 0.256 |
| 79 | 79 | 0.619 |
| 8 | 8 | 0.955 |
| 80 | 80 | 0.122 |
| 81 | 81 | 0.406 |
| 82 | 82 | 0.255 |
| 83 | 83 | 0.284 |
| 84 | 84 | 0.0385 |
| 85 | 85 | 0.0558 |
| 86 | 86 | 0.0441 |
| 87 | 87 | 0.864 |
| 88 | 88 | 0.871 |
| 89 | 89 | 0.917 |
| 9 | 9 | 0.409 |
| 90 | 90 | 0.264 |
| 91 | 91 | 0.303 |
| 92 | 92 | 0.362 |
| 93 | 93 | 0.727 |
| 94 | 94 | 0.0853 |
| 95 | 95 | 0.262 |
| 96 | 96 | 0.461 |
| 97 | 97 | 0.757 |
| 98 | 98 | 0.135 |
| 99 | 99 | 0.00562 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11954
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000024 (human CD14-positive monocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)
