FF:10647-109A8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005182 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007918;DRR008790;DRZ000215;DRZ001600;DRZ011565;DRZ012950 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101120,FF:0101874,FF:0103071 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10647-109A8 | |id=FF:10647-109A8 | ||
|is_a=CL:0002224;;EFO:0002091;;FF: | |is_a=CL:0002224;;EFO:0002091;;FF:0000210;;FF:0103071 | ||
|is_obsolete= | |||
|library_id=CNhs11750 | |||
|library_id_phase_based=2:CNhs11750 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10647 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10647 | |||
|name=lens epithelial cell line:SRA 01/04 | |name=lens epithelial cell line:SRA 01/04 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11750,LSID819,release009,COMPLETED | |profile_hcage=CNhs11750,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.067056436129675,0.203723632538546,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188566723987338,0,0,0,0,0,-0.0979578962680575,0,0,0.208933144556903,0,0,0,0,0,0,0,0,0,0,0.53078909704316,0,-0.145899716966013,0,0,0,0,0,0,0,0,0.306781461479299,0,0,0,0,0,0.0634402668484127,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0475048059928952,0,0,0,0.146347305356206,-0.040252535527986,0.170944867167883,0,0,0,-0.0980353512377064,0.242832363329551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.074571273245422,0,0,0,0,0.096868194675037,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,0.596901150056031,-0.143515142523472,0,0,0.0849312201368825,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,0.0364175034373582,0,-0.17425806114951,0.273545473258397,0,0,0,0,-0.270240669334324,0,0.221010250542025,-0.0827201683234173,0.170849155901379,-0.315258819945134,-0.055712496781182,0,0,0,0.152258399147196,-0.356385948208623,0,0,-0.121779851751874,-0.0104047513927763,0,0,-0.391044581551635,0,0.123048530475179,-0.106537482029046,0,-0.0323676643791403,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,-0.0304099808375785,0,0,0,0.154280972222993,0,0,0.157502941086593,-0.00884627896109313,0,0.294994290707125,0,-0.302389727009913,0.0622386376118255,-0.300879995432235,0.146347305356206,0.383387247672021,0.472011245634418,0,-0.139761430440734,0.365107061511943,0,0.0630684836905804,-0.0104515414651142,-0.206987894194199,0.233895151368657,0,0,0,-0.103150822053164,0,0.341889734335766,-0.148224980141008,0.129712822847968,0.065648331228165,-0.040416590029866,0.157452320106284,0.12309439920475,0.131412338711212,0.0733526441465652,0.0580536392062934,-0.079682590567934,0,0,0,0.0594086388230721,0.285075261700717,0.0461667920055864,0,-0.483977461810981,0.273545473258397,0,0.030427390994814,-0.00906091298573042,0,0,-0.236887496535646,0,0.127351460197451,0,0,0,-0.0603694225533145,0.223126985230727,0.297933535487615,0,0.082121543107057,0.017716816228684,0.124844049039748,0,0.0690109438642177,-0.146009897457394,-0.298074152361292,0.115096441970739,0,0.168741536529555,0.454717821677842,0.128595684969293,-0.080505071055972,0.472342270231335,0.340515435032308,0.135879607034345,0.0988198072535231,-0.447050130454461,0.217582037742352,-0.0881268324752877,0,0.187442618289659,-0.0175051664372589,0,-0.0815885544695564,0,-0.206694549568903,0,-0.243009636231279,0,0.0922882555641039,-0.54043375147324,0.0914997224624737,-0.328160877255338,0,-0.182596712907791,0.12482467948837,0.122768657510752,0,0,0,0.511625881849626,-0.355806232176817,-0.211650427864589,0.126405091842385,0,0.122875458872687,0,0,-0.380854585558605,-0.235476037764389,0.341889734335766,0.490918893693951,0.235057344571274,0.158403087065599,0.225918660900831,0,0,-0.303810603656959,0,0,-0.264038329482265,0.354298532055644,0.733390848307495,-0.253326341486756,0,-0.108622809454255,0,0,-0.177527765965176,0,0.32646065624793,0,0,-0.249881296598824,0,0,0,0.341889734335766,0,0,-0.0039614501012728,0,0,0,0,0,0.194951898506424,0.307159634967818,0,0,0,0,0,0,0,0,0,0.912955617262344,0.342210211640592,0.0323366377239255,-0.12301741567642,0,0,0,0,0.126166331782291,0.138653172241042,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.192087309864817,0,0,0,0.485664726659103,0,0,0,0,-0.0495850005785303,0,0,0,0,0.0708570480086406,-0.0815818795468414,0,0.262750051769499,-0.0570221247340066,0.0435538316176662,0,0,0.269441965253272,0,0,0.15066237584393,0,0,0.411892690524433,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.12800704659883,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,0.0901299258615662,0,0,0,0,0,0,0,0,-0.129536205327477,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.407447265077091,0,0,0.253426964849646,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.0982230062128973,0,0,0,0,0,0,0,0.067056436129675,0,0,0,0,-0.113884373708977,0,0,0,0.237093349546609,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212856874794768,0,0.24358158107025,0.00406439913812662,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0878317317629865,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.42432920606587,0.596405004758249,0.171803965711675,0,0,0,-0.054385572482455,0,0,0.0652386583011975,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188566723987338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.341889734335766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.128803504678722,0,0,0,0,0,0,0.341889734335766,0,0.341889734335766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256564098233871,0,0,0,0,0,0,0,0,0.53078909704316,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.208614308179947,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.341889734335766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40838235689576,0,0,-0.318028478722954,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.613562922958597,0,0,0,0,0,0,0,0,1.11304105937719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170944867167883,-0.0203449984452635,0.096868194675037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101753732523773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=21.17162 | |rna_weight_ug=21.17162 | ||
|sample_age=3 months | |sample_age=3 months | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1591 | |sample_cell_catalog=RCB1591 | ||
|sample_cell_line=SRA 01/04 | |sample_cell_line=SRA 01/04 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.17605459675619e-243!GO:0043226;organelle;6.96232566365854e-200!GO:0043229;intracellular organelle;2.05653737679038e-199!GO:0043231;intracellular membrane-bound organelle;8.50622882901019e-195!GO:0043227;membrane-bound organelle;1.3489366162623e-194!GO:0005737;cytoplasm;7.43390194673152e-169!GO:0044422;organelle part;6.48496827749459e-144!GO:0044446;intracellular organelle part;1.24973927863442e-142!GO:0044444;cytoplasmic part;6.61222708793569e-109!GO:0032991;macromolecular complex;8.92307124461704e-102!GO:0005634;nucleus;4.23159053381901e-93!GO:0043170;macromolecule metabolic process;3.00275289832596e-89!GO:0044238;primary metabolic process;9.49690610407201e-87!GO:0044237;cellular metabolic process;3.57697212966513e-86!GO:0005515;protein binding;2.86724896639511e-84!GO:0044428;nuclear part;5.34088169491061e-82!GO:0030529;ribonucleoprotein complex;3.03715091454294e-79!GO:0043233;organelle lumen;7.31250185467219e-71!GO:0031974;membrane-enclosed lumen;7.31250185467219e-71!GO:0003723;RNA binding;4.26348026428885e-68!GO:0016043;cellular component organization and biogenesis;9.25420674875339e-60!GO:0043283;biopolymer metabolic process;7.87517707555071e-57!GO:0043234;protein complex;1.02868248715306e-53!GO:0019538;protein metabolic process;1.78077925622122e-51!GO:0005739;mitochondrion;4.1627942247514e-51!GO:0031981;nuclear lumen;2.10072484625561e-48!GO:0006396;RNA processing;5.18886453734715e-48!GO:0044260;cellular macromolecule metabolic process;7.30862596583528e-47!GO:0044267;cellular protein metabolic process;2.24142600977112e-46!GO:0033036;macromolecule localization;7.53387180078662e-46!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.01467929093779e-46!GO:0015031;protein transport;6.8995651363269e-45!GO:0010467;gene expression;1.88295194929163e-44!GO:0031090;organelle membrane;3.95158993277404e-43!GO:0005840;ribosome;6.54805481284696e-43!GO:0006412;translation;7.2202265026861e-42!GO:0008104;protein localization;1.10910272344846e-41!GO:0045184;establishment of protein localization;6.13009401399306e-41!GO:0043228;non-membrane-bound organelle;6.76966350092498e-41!GO:0043232;intracellular non-membrane-bound organelle;6.76966350092498e-41!GO:0016071;mRNA metabolic process;2.12643023741899e-40!GO:0006996;organelle organization and biogenesis;1.90424341267249e-39!GO:0046907;intracellular transport;3.12177667939517e-39!GO:0006259;DNA metabolic process;1.4235665376248e-37!GO:0003735;structural constituent of ribosome;3.05073687535181e-37!GO:0008380;RNA splicing;9.19247975438001e-36!GO:0006397;mRNA processing;9.85922020762113e-35!GO:0031967;organelle envelope;2.1649591879327e-34!GO:0031975;envelope;4.68966914450101e-34!GO:0007049;cell cycle;2.24504737578467e-33!GO:0044429;mitochondrial part;2.31320617114885e-33!GO:0033279;ribosomal subunit;3.03335305940829e-33!GO:0000166;nucleotide binding;1.63894243022178e-32!GO:0006886;intracellular protein transport;6.57409466149349e-32!GO:0005829;cytosol;1.70145485339932e-31!GO:0009059;macromolecule biosynthetic process;7.3450965697613e-31!GO:0065003;macromolecular complex assembly;9.70227068959518e-31!GO:0005654;nucleoplasm;2.58756487697313e-30!GO:0044249;cellular biosynthetic process;1.7355908276556e-28!GO:0022607;cellular component assembly;3.05191511097359e-28!GO:0009058;biosynthetic process;5.01708555918353e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.56714661536242e-27!GO:0003676;nucleic acid binding;8.79933112306933e-27!GO:0005681;spliceosome;1.1271137751203e-26!GO:0051649;establishment of cellular localization;1.77399513504228e-25!GO:0051641;cellular localization;3.86333720453769e-25!GO:0000278;mitotic cell cycle;1.93320124081968e-24!GO:0044451;nucleoplasm part;3.30569201296944e-24!GO:0022402;cell cycle process;5.01078103898245e-24!GO:0016462;pyrophosphatase activity;9.92675514628185e-24!GO:0032553;ribonucleotide binding;9.92675514628185e-24!GO:0032555;purine ribonucleotide binding;9.92675514628185e-24!GO:0017111;nucleoside-triphosphatase activity;9.92675514628185e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.99862050318744e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.40671468870685e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;2.16953212732526e-23!GO:0017076;purine nucleotide binding;7.05583304925622e-23!GO:0016070;RNA metabolic process;1.06879733248443e-21!GO:0005524;ATP binding;3.54717191158225e-21!GO:0032559;adenyl ribonucleotide binding;1.03639301257324e-20!GO:0019866;organelle inner membrane;1.4025383170722e-20!GO:0006974;response to DNA damage stimulus;1.96726347024518e-20!GO:0005740;mitochondrial envelope;2.44552915091463e-20!GO:0006119;oxidative phosphorylation;8.09330243673928e-20!GO:0030554;adenyl nucleotide binding;9.91375018056392e-20!GO:0031966;mitochondrial membrane;2.24069923659217e-19!GO:0005730;nucleolus;2.47902995333644e-19!GO:0012505;endomembrane system;2.7466349489483e-19!GO:0006512;ubiquitin cycle;4.36066162592404e-19!GO:0006457;protein folding;4.77286033516206e-19!GO:0044445;cytosolic part;5.30640251848746e-19!GO:0008134;transcription factor binding;7.69479138181755e-19!GO:0022403;cell cycle phase;2.28499695635754e-18!GO:0051301;cell division;2.83582891505589e-18!GO:0005743;mitochondrial inner membrane;3.16416809032279e-18!GO:0005694;chromosome;5.17339133789796e-18!GO:0006281;DNA repair;7.60892792297098e-18!GO:0015935;small ribosomal subunit;8.87602282016016e-18!GO:0043412;biopolymer modification;1.18727248107042e-17!GO:0000087;M phase of mitotic cell cycle;1.25559701754293e-17!GO:0007067;mitosis;1.82086508593599e-17!GO:0016874;ligase activity;1.94736238837223e-17!GO:0022618;protein-RNA complex assembly;7.53122103960767e-17!GO:0006260;DNA replication;7.61003843575057e-17!GO:0015934;large ribosomal subunit;1.321436673526e-16!GO:0044455;mitochondrial membrane part;2.46499040782558e-16!GO:0051276;chromosome organization and biogenesis;2.70489018270185e-16!GO:0044427;chromosomal part;2.74648492385971e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.78262840801672e-16!GO:0019941;modification-dependent protein catabolic process;4.54673256009995e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.54673256009995e-16!GO:0006511;ubiquitin-dependent protein catabolic process;5.33322759212324e-16!GO:0044257;cellular protein catabolic process;7.85880641462647e-16!GO:0016887;ATPase activity;8.27339960789936e-16!GO:0031980;mitochondrial lumen;8.54332878257478e-16!GO:0005759;mitochondrial matrix;8.54332878257478e-16!GO:0044265;cellular macromolecule catabolic process;1.01917377541386e-15!GO:0006464;protein modification process;1.11771906446936e-15!GO:0006605;protein targeting;1.14187263825443e-15!GO:0048770;pigment granule;1.34977193990286e-15!GO:0042470;melanosome;1.34977193990286e-15!GO:0031965;nuclear membrane;2.95191581633246e-15!GO:0051082;unfolded protein binding;3.2429662098122e-15!GO:0043687;post-translational protein modification;5.63417403969868e-15!GO:0042623;ATPase activity, coupled;6.20414867718676e-15!GO:0043285;biopolymer catabolic process;7.27418340305868e-15!GO:0044453;nuclear membrane part;8.27191650128589e-15!GO:0005635;nuclear envelope;8.42841860584871e-15!GO:0005783;endoplasmic reticulum;1.20438989454631e-14!GO:0005746;mitochondrial respiratory chain;1.80511447816885e-14!GO:0000279;M phase;1.94889648458215e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.00424095515986e-14!GO:0048193;Golgi vesicle transport;4.28211649251025e-14!GO:0050136;NADH dehydrogenase (quinone) activity;5.39684337815242e-14!GO:0003954;NADH dehydrogenase activity;5.39684337815242e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.39684337815242e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.67497621874786e-14!GO:0005794;Golgi apparatus;9.31885442576422e-14!GO:0008135;translation factor activity, nucleic acid binding;1.08279920790129e-13!GO:0009719;response to endogenous stimulus;1.27688694356084e-13!GO:0030163;protein catabolic process;1.27688694356084e-13!GO:0044432;endoplasmic reticulum part;2.71478481932817e-13!GO:0009057;macromolecule catabolic process;4.09274952616026e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.65831498881891e-13!GO:0000375;RNA splicing, via transesterification reactions;4.65831498881891e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.65831498881891e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;5.68290838295285e-13!GO:0051726;regulation of cell cycle;1.25346926699989e-12!GO:0016604;nuclear body;1.39471525855616e-12!GO:0005761;mitochondrial ribosome;1.52161422501621e-12!GO:0000313;organellar ribosome;1.52161422501621e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.57685064045008e-12!GO:0005643;nuclear pore;1.60503759745235e-12!GO:0006913;nucleocytoplasmic transport;1.73047753016431e-12!GO:0016192;vesicle-mediated transport;2.00238698044334e-12!GO:0006323;DNA packaging;2.03821504459608e-12!GO:0000074;regulation of progression through cell cycle;2.33020226606813e-12!GO:0015630;microtubule cytoskeleton;2.57460054635501e-12!GO:0004386;helicase activity;2.59556522352715e-12!GO:0003712;transcription cofactor activity;2.84174387919955e-12!GO:0051169;nuclear transport;4.21055083191668e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.02831088454517e-12!GO:0045271;respiratory chain complex I;6.02831088454517e-12!GO:0005747;mitochondrial respiratory chain complex I;6.02831088454517e-12!GO:0042775;organelle ATP synthesis coupled electron transport;6.79774561901364e-12!GO:0042773;ATP synthesis coupled electron transport;6.79774561901364e-12!GO:0050794;regulation of cellular process;8.11346969095678e-12!GO:0012501;programmed cell death;8.67520659608713e-12!GO:0008639;small protein conjugating enzyme activity;1.03537210672628e-11!GO:0042254;ribosome biogenesis and assembly;1.11957167547e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.2223827376943e-11!GO:0006915;apoptosis;1.68437908885927e-11!GO:0006403;RNA localization;1.75202250022201e-11!GO:0050657;nucleic acid transport;1.8768488131304e-11!GO:0051236;establishment of RNA localization;1.8768488131304e-11!GO:0050658;RNA transport;1.8768488131304e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.01095823685877e-11!GO:0004842;ubiquitin-protein ligase activity;2.51495690268397e-11!GO:0048523;negative regulation of cellular process;2.80498914891446e-11!GO:0065002;intracellular protein transport across a membrane;4.77701327979473e-11!GO:0044248;cellular catabolic process;4.99763320402935e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.36810452168008e-11!GO:0003743;translation initiation factor activity;7.24837450502646e-11!GO:0006366;transcription from RNA polymerase II promoter;9.04745628584492e-11!GO:0008219;cell death;9.79031634957008e-11!GO:0016265;death;9.79031634957008e-11!GO:0051186;cofactor metabolic process;1.23478438170019e-10!GO:0016568;chromatin modification;1.42739957681298e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.67959711765073e-10!GO:0019787;small conjugating protein ligase activity;1.70557866419577e-10!GO:0008026;ATP-dependent helicase activity;1.78053219050165e-10!GO:0046930;pore complex;2.473685929478e-10!GO:0016607;nuclear speck;2.99074634891476e-10!GO:0005789;endoplasmic reticulum membrane;6.32525010406369e-10!GO:0006413;translational initiation;6.90670120215585e-10!GO:0006461;protein complex assembly;9.48948703721992e-10!GO:0048519;negative regulation of biological process;9.92266810524797e-10!GO:0006446;regulation of translational initiation;1.12657737143544e-09!GO:0051028;mRNA transport;1.41079276663693e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.41079276663693e-09!GO:0009259;ribonucleotide metabolic process;1.98569820697042e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.13484374947117e-09!GO:0006793;phosphorus metabolic process;3.23895498699133e-09!GO:0006796;phosphate metabolic process;3.23895498699133e-09!GO:0016881;acid-amino acid ligase activity;3.81223414506946e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.9388221296409e-09!GO:0017038;protein import;4.68618414866892e-09!GO:0005793;ER-Golgi intermediate compartment;4.75920756474609e-09!GO:0008565;protein transporter activity;6.05882693898944e-09!GO:0030532;small nuclear ribonucleoprotein complex;8.17685002971599e-09!GO:0000785;chromatin;8.73813527451603e-09!GO:0006163;purine nucleotide metabolic process;1.13350266719045e-08!GO:0009150;purine ribonucleotide metabolic process;2.22012530621897e-08!GO:0005815;microtubule organizing center;2.26335766063546e-08!GO:0005813;centrosome;2.47870089178102e-08!GO:0051329;interphase of mitotic cell cycle;2.66462399019557e-08!GO:0016310;phosphorylation;2.76473316698519e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.89802812880913e-08!GO:0006364;rRNA processing;3.18656751836542e-08!GO:0009260;ribonucleotide biosynthetic process;4.02907589562012e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.44552274554923e-08!GO:0016072;rRNA metabolic process;5.02311307245538e-08!GO:0043067;regulation of programmed cell death;5.14252807618274e-08!GO:0006164;purine nucleotide biosynthetic process;5.27764525961335e-08!GO:0005819;spindle;5.57384275713994e-08!GO:0031324;negative regulation of cellular metabolic process;5.58916878091058e-08!GO:0006399;tRNA metabolic process;5.69538621539127e-08!GO:0009141;nucleoside triphosphate metabolic process;5.75268718313199e-08!GO:0042981;regulation of apoptosis;5.75268718313199e-08!GO:0009055;electron carrier activity;7.47686934394613e-08!GO:0005667;transcription factor complex;7.47686934394613e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.70059420535003e-08!GO:0009144;purine nucleoside triphosphate metabolic process;8.70059420535003e-08!GO:0006333;chromatin assembly or disassembly;8.80189335681439e-08!GO:0051325;interphase;9.14746352613101e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.20945178815466e-08!GO:0050789;regulation of biological process;9.33772460723508e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.89173500859701e-08!GO:0016563;transcription activator activity;1.00429003835116e-07!GO:0000151;ubiquitin ligase complex;1.05028301405909e-07!GO:0006261;DNA-dependent DNA replication;1.24454424603763e-07!GO:0000245;spliceosome assembly;1.24629703320065e-07!GO:0005657;replication fork;1.32006457177236e-07!GO:0065004;protein-DNA complex assembly;1.39374351310331e-07!GO:0015986;ATP synthesis coupled proton transport;1.39628744941859e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.39628744941859e-07!GO:0006732;coenzyme metabolic process;1.40709903341056e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.64743583647393e-07!GO:0007010;cytoskeleton organization and biogenesis;1.64743583647393e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.85324630077714e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.85324630077714e-07!GO:0019829;cation-transporting ATPase activity;1.90030503679762e-07!GO:0032446;protein modification by small protein conjugation;2.19697332051431e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.98339465047197e-07!GO:0016567;protein ubiquitination;3.23079207699059e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.47610420664556e-07!GO:0046034;ATP metabolic process;3.68437828713437e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.7584207907069e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.7584207907069e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.02669896247302e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.02669896247302e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.02669896247302e-07!GO:0016564;transcription repressor activity;4.18022832380411e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.445732759667e-07!GO:0000775;chromosome, pericentric region;5.25952877417477e-07!GO:0005768;endosome;5.2787242348841e-07!GO:0016740;transferase activity;5.98908432086439e-07!GO:0019222;regulation of metabolic process;6.50918308257963e-07!GO:0030120;vesicle coat;7.05742487886259e-07!GO:0030662;coated vesicle membrane;7.05742487886259e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.50846402363061e-07!GO:0043566;structure-specific DNA binding;7.77265009737615e-07!GO:0003697;single-stranded DNA binding;8.22672002196853e-07!GO:0043069;negative regulation of programmed cell death;8.50644874474046e-07!GO:0043038;amino acid activation;1.02579172457948e-06!GO:0006418;tRNA aminoacylation for protein translation;1.02579172457948e-06!GO:0043039;tRNA aminoacylation;1.02579172457948e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.03366568993813e-06!GO:0043623;cellular protein complex assembly;1.0417541070013e-06!GO:0019899;enzyme binding;1.13593420709614e-06!GO:0006754;ATP biosynthetic process;1.36175003515183e-06!GO:0006753;nucleoside phosphate metabolic process;1.36175003515183e-06!GO:0009892;negative regulation of metabolic process;1.4043004927041e-06!GO:0009060;aerobic respiration;1.54714979093429e-06!GO:0003714;transcription corepressor activity;1.74828349933627e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.85203613798377e-06!GO:0043066;negative regulation of apoptosis;2.13722624879113e-06!GO:0051170;nuclear import;2.15362861412051e-06!GO:0016481;negative regulation of transcription;2.32494502437263e-06!GO:0007051;spindle organization and biogenesis;2.63861598138276e-06!GO:0003713;transcription coactivator activity;2.75847766951261e-06!GO:0006606;protein import into nucleus;2.76041815866678e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.95327276397149e-06!GO:0045786;negative regulation of progression through cell cycle;3.01936152093067e-06!GO:0003924;GTPase activity;3.20667365320641e-06!GO:0051246;regulation of protein metabolic process;3.57700094892494e-06!GO:0045259;proton-transporting ATP synthase complex;3.99352432596791e-06!GO:0000075;cell cycle checkpoint;4.35924195211428e-06!GO:0003724;RNA helicase activity;4.6387730664466e-06!GO:0009056;catabolic process;5.28618700573739e-06!GO:0016787;hydrolase activity;5.78458272686543e-06!GO:0008094;DNA-dependent ATPase activity;5.88889003320609e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.25979184724477e-06!GO:0003682;chromatin binding;6.39263610796811e-06!GO:0009117;nucleotide metabolic process;7.06900325204281e-06!GO:0051427;hormone receptor binding;7.15922006006707e-06!GO:0048475;coated membrane;7.75561838242557e-06!GO:0030117;membrane coat;7.75561838242557e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.02935615003661e-06!GO:0044431;Golgi apparatus part;9.44968035554076e-06!GO:0051188;cofactor biosynthetic process;1.13837622120332e-05!GO:0007005;mitochondrion organization and biogenesis;1.17266629624836e-05!GO:0051168;nuclear export;1.17694869029489e-05!GO:0004674;protein serine/threonine kinase activity;1.25524351835314e-05!GO:0005769;early endosome;1.29395900784548e-05!GO:0006916;anti-apoptosis;1.38599855380846e-05!GO:0035257;nuclear hormone receptor binding;1.65736177904516e-05!GO:0005798;Golgi-associated vesicle;1.82523225997097e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.30149913062047e-05!GO:0045333;cellular respiration;2.76339023384458e-05!GO:0004298;threonine endopeptidase activity;2.7776722517119e-05!GO:0005525;GTP binding;2.93871483435101e-05!GO:0005874;microtubule;3.35842424217053e-05!GO:0006099;tricarboxylic acid cycle;3.42210553664332e-05!GO:0046356;acetyl-CoA catabolic process;3.42210553664332e-05!GO:0006613;cotranslational protein targeting to membrane;3.66157152951104e-05!GO:0031497;chromatin assembly;3.98553575377492e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.99309146726015e-05!GO:0031252;leading edge;4.87282402542339e-05!GO:0031323;regulation of cellular metabolic process;4.99957307518978e-05!GO:0044440;endosomal part;5.08008548325057e-05!GO:0010008;endosome membrane;5.08008548325057e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.15760981351983e-05!GO:0031988;membrane-bound vesicle;5.21065950329295e-05!GO:0006084;acetyl-CoA metabolic process;5.57034824661918e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.00958111333443e-05!GO:0006302;double-strand break repair;6.12121496928213e-05!GO:0008092;cytoskeletal protein binding;6.12878186829213e-05!GO:0005762;mitochondrial large ribosomal subunit;6.68416899275007e-05!GO:0000315;organellar large ribosomal subunit;6.68416899275007e-05!GO:0008361;regulation of cell size;7.30163672055466e-05!GO:0005905;coated pit;7.86249049824137e-05!GO:0016779;nucleotidyltransferase activity;8.50320156080925e-05!GO:0006752;group transfer coenzyme metabolic process;9.20738959916275e-05!GO:0016049;cell growth;9.23098953555082e-05!GO:0001558;regulation of cell growth;9.25968616909442e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000100640489213774!GO:0031982;vesicle;0.000101768958471293!GO:0000082;G1/S transition of mitotic cell cycle;0.00010310817228862!GO:0030036;actin cytoskeleton organization and biogenesis;0.000111754115465146!GO:0008186;RNA-dependent ATPase activity;0.000116570482424002!GO:0031072;heat shock protein binding;0.000116570482424002!GO:0031410;cytoplasmic vesicle;0.000125221594672502!GO:0008654;phospholipid biosynthetic process;0.000126104517813524!GO:0005788;endoplasmic reticulum lumen;0.000135033931529757!GO:0000776;kinetochore;0.000135272371617493!GO:0007243;protein kinase cascade;0.000143493238477422!GO:0003729;mRNA binding;0.000146682313894616!GO:0043021;ribonucleoprotein binding;0.000146682313894616!GO:0051187;cofactor catabolic process;0.000155384018900726!GO:0015631;tubulin binding;0.000155540734155615!GO:0009108;coenzyme biosynthetic process;0.00015685512396711!GO:0051789;response to protein stimulus;0.000173670118012304!GO:0006986;response to unfolded protein;0.000173670118012304!GO:0006334;nucleosome assembly;0.000174907436740345!GO:0030867;rough endoplasmic reticulum membrane;0.000179598476523435!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000189795736664877!GO:0016363;nuclear matrix;0.000216414417057572!GO:0005773;vacuole;0.000220522448675909!GO:0007093;mitotic cell cycle checkpoint;0.000233020762704765!GO:0009109;coenzyme catabolic process;0.000244188846468377!GO:0048471;perinuclear region of cytoplasm;0.000251323874128717!GO:0006338;chromatin remodeling;0.000252141968047511!GO:0006350;transcription;0.000271838718443664!GO:0000314;organellar small ribosomal subunit;0.000282571614908905!GO:0005763;mitochondrial small ribosomal subunit;0.000282571614908905!GO:0000139;Golgi membrane;0.000296514575214394!GO:0045941;positive regulation of transcription;0.000301286384121741!GO:0051052;regulation of DNA metabolic process;0.000305838285437993!GO:0032561;guanyl ribonucleotide binding;0.000306111973862519!GO:0019001;guanyl nucleotide binding;0.000306111973862519!GO:0006310;DNA recombination;0.000322901493277788!GO:0008022;protein C-terminus binding;0.000323101648972562!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00032399851092175!GO:0016301;kinase activity;0.000339862700078565!GO:0003690;double-stranded DNA binding;0.000344219018237988!GO:0007088;regulation of mitosis;0.000355409660838328!GO:0004004;ATP-dependent RNA helicase activity;0.000357528920090361!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000368739942765311!GO:0015399;primary active transmembrane transporter activity;0.000368739942765311!GO:0005048;signal sequence binding;0.000371948115171532!GO:0007017;microtubule-based process;0.000423714360536824!GO:0006352;transcription initiation;0.000426258076027463!GO:0005770;late endosome;0.000449629629638481!GO:0045893;positive regulation of transcription, DNA-dependent;0.000456496002637393!GO:0008250;oligosaccharyl transferase complex;0.000523895627466579!GO:0065007;biological regulation;0.000525239712387141!GO:0000059;protein import into nucleus, docking;0.000554296155231284!GO:0048522;positive regulation of cellular process;0.000557094752525982!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000580992366880186!GO:0030029;actin filament-based process;0.000622228991468926!GO:0019843;rRNA binding;0.000628470660273705!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00064895878690003!GO:0035258;steroid hormone receptor binding;0.000653436476124871!GO:0065009;regulation of a molecular function;0.000683910845278479!GO:0005876;spindle microtubule;0.000709977133448013!GO:0000323;lytic vacuole;0.000715150710872181!GO:0005764;lysosome;0.000715150710872181!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00072471743033378!GO:0007059;chromosome segregation;0.000776284210825717!GO:0006611;protein export from nucleus;0.000798910032194363!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000799003591419845!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000799003591419845!GO:0045892;negative regulation of transcription, DNA-dependent;0.000822620871465309!GO:0043596;nuclear replication fork;0.000827137617401975!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000836981063131769!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000851237461926678!GO:0016044;membrane organization and biogenesis;0.000875045647412273!GO:0051920;peroxiredoxin activity;0.000967512909741432!GO:0004576;oligosaccharyl transferase activity;0.000994727559142251!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000995835047699166!GO:0033116;ER-Golgi intermediate compartment membrane;0.00101831558126737!GO:0030521;androgen receptor signaling pathway;0.00103962472140627!GO:0006612;protein targeting to membrane;0.00106348986779059!GO:0048487;beta-tubulin binding;0.00109202121720228!GO:0003678;DNA helicase activity;0.00109771319396427!GO:0016859;cis-trans isomerase activity;0.00113577373908639!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00121229385935956!GO:0003684;damaged DNA binding;0.00125584294696863!GO:0007264;small GTPase mediated signal transduction;0.00136343451366455!GO:0003899;DNA-directed RNA polymerase activity;0.00136343451366455!GO:0005637;nuclear inner membrane;0.0013913669861625!GO:0032508;DNA duplex unwinding;0.00139874827320982!GO:0032392;DNA geometric change;0.00139874827320982!GO:0051252;regulation of RNA metabolic process;0.00145494359356975!GO:0006892;post-Golgi vesicle-mediated transport;0.00147296057810672!GO:0010468;regulation of gene expression;0.00148259584441785!GO:0005885;Arp2/3 protein complex;0.00157677589370657!GO:0005684;U2-dependent spliceosome;0.0016085794271581!GO:0000792;heterochromatin;0.00172107041149405!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00173758923806047!GO:0048468;cell development;0.00182524990380321!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0018617778726916!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0018617778726916!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0018617778726916!GO:0006402;mRNA catabolic process;0.00187662306675673!GO:0030663;COPI coated vesicle membrane;0.00188036446655185!GO:0030126;COPI vesicle coat;0.00188036446655185!GO:0007052;mitotic spindle organization and biogenesis;0.00190929075923146!GO:0008139;nuclear localization sequence binding;0.00203154979333443!GO:0030132;clathrin coat of coated pit;0.00203204172785721!GO:0040008;regulation of growth;0.0020939750140251!GO:0043492;ATPase activity, coupled to movement of substances;0.00215312567251212!GO:0007050;cell cycle arrest;0.00215826172086989!GO:0030137;COPI-coated vesicle;0.00218531814168768!GO:0044452;nucleolar part;0.00218531814168768!GO:0018196;peptidyl-asparagine modification;0.00222266325517082!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00222266325517082!GO:0009165;nucleotide biosynthetic process;0.00224164717784513!GO:0033673;negative regulation of kinase activity;0.00232768600793824!GO:0006469;negative regulation of protein kinase activity;0.00232768600793824!GO:0045454;cell redox homeostasis;0.00235259047514286!GO:0016197;endosome transport;0.00243891055734826!GO:0043681;protein import into mitochondrion;0.00252851211292319!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00254595225992691!GO:0045792;negative regulation of cell size;0.002570086023819!GO:0031625;ubiquitin protein ligase binding;0.00257077191999819!GO:0015992;proton transport;0.00259091334056019!GO:0046474;glycerophospholipid biosynthetic process;0.00259214540366313!GO:0006818;hydrogen transport;0.00267030501616495!GO:0016272;prefoldin complex;0.00267030501616495!GO:0016853;isomerase activity;0.00271697886666269!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0028002999757099!GO:0030308;negative regulation of cell growth;0.00291197328057101!GO:0015980;energy derivation by oxidation of organic compounds;0.002929091593967!GO:0006268;DNA unwinding during replication;0.00301356987225823!GO:0050681;androgen receptor binding;0.00301356987225823!GO:0042802;identical protein binding;0.00301356987225823!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00301700598661794!GO:0046489;phosphoinositide biosynthetic process;0.00316031524944354!GO:0048500;signal recognition particle;0.00326622545896471!GO:0006401;RNA catabolic process;0.00338903791978279!GO:0006383;transcription from RNA polymerase III promoter;0.00361628861572747!GO:0051348;negative regulation of transferase activity;0.00366764402587237!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00379307758502377!GO:0030518;steroid hormone receptor signaling pathway;0.00379307758502377!GO:0051087;chaperone binding;0.00398125172458859!GO:0031901;early endosome membrane;0.00416526936605635!GO:0017166;vinculin binding;0.00429219409784407!GO:0007346;regulation of progression through mitotic cell cycle;0.00436656772867066!GO:0043601;nuclear replisome;0.0044910849512301!GO:0030894;replisome;0.0044910849512301!GO:0003711;transcription elongation regulator activity;0.00452222522697792!GO:0030176;integral to endoplasmic reticulum membrane;0.00464471413706723!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00499558153146093!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00499558153146093!GO:0006414;translational elongation;0.00505160216486216!GO:0040029;regulation of gene expression, epigenetic;0.00517793919713729!GO:0031124;mRNA 3'-end processing;0.00568230950156222!GO:0030658;transport vesicle membrane;0.00568230950156222!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00574848645856977!GO:0008047;enzyme activator activity;0.00595380626987908!GO:0030133;transport vesicle;0.00609619962711702!GO:0030384;phosphoinositide metabolic process;0.00619176197867206!GO:0004527;exonuclease activity;0.0061955585233745!GO:0006284;base-excision repair;0.00627878118459075!GO:0006376;mRNA splice site selection;0.00628772725377335!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00628772725377335!GO:0000152;nuclear ubiquitin ligase complex;0.00630755192820721!GO:0007006;mitochondrial membrane organization and biogenesis;0.00632909413957315!GO:0006405;RNA export from nucleus;0.0064519419227476!GO:0016251;general RNA polymerase II transcription factor activity;0.00646458556065014!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00646458556065014!GO:0008312;7S RNA binding;0.00646488377078654!GO:0005856;cytoskeleton;0.0066108402248757!GO:0001726;ruffle;0.00671907672619302!GO:0000910;cytokinesis;0.0071138825329756!GO:0008629;induction of apoptosis by intracellular signals;0.00742810514919391!GO:0050790;regulation of catalytic activity;0.00742810514919391!GO:0032774;RNA biosynthetic process;0.00742810514919391!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00748012028746801!GO:0005791;rough endoplasmic reticulum;0.00769474166234945!GO:0000922;spindle pole;0.00774834694383672!GO:0022890;inorganic cation transmembrane transporter activity;0.00780722997024409!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00827476489166267!GO:0043284;biopolymer biosynthetic process;0.00838268883688599!GO:0006650;glycerophospholipid metabolic process;0.00848555276189877!GO:0006351;transcription, DNA-dependent;0.00903823083093149!GO:0006220;pyrimidine nucleotide metabolic process;0.00920030760439572!GO:0003702;RNA polymerase II transcription factor activity;0.00927263291631577!GO:0008287;protein serine/threonine phosphatase complex;0.00927263291631577!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00930391808253127!GO:0045047;protein targeting to ER;0.00930391808253127!GO:0030134;ER to Golgi transport vesicle;0.00963278893179047!GO:0030660;Golgi-associated vesicle membrane;0.0101755780023335!GO:0005869;dynactin complex;0.0102622002643615!GO:0006275;regulation of DNA replication;0.0105200905930915!GO:0006839;mitochondrial transport;0.0105584392785298!GO:0005096;GTPase activator activity;0.0106056676059813!GO:0046467;membrane lipid biosynthetic process;0.010918713130336!GO:0008033;tRNA processing;0.0109673686893244!GO:0045936;negative regulation of phosphate metabolic process;0.0110758982824076!GO:0006626;protein targeting to mitochondrion;0.0112571026585163!GO:0006091;generation of precursor metabolites and energy;0.0112693944216106!GO:0044450;microtubule organizing center part;0.0115459207785985!GO:0043130;ubiquitin binding;0.0116409025449502!GO:0032182;small conjugating protein binding;0.0116409025449502!GO:0000228;nuclear chromosome;0.0116444728184715!GO:0007242;intracellular signaling cascade;0.0121465230342313!GO:0006270;DNA replication initiation;0.0121465230342313!GO:0006595;polyamine metabolic process;0.0121754405693794!GO:0030127;COPII vesicle coat;0.0125024500753029!GO:0012507;ER to Golgi transport vesicle membrane;0.0125024500753029!GO:0004177;aminopeptidase activity;0.0127500004183432!GO:0030027;lamellipodium;0.0128126287126016!GO:0051059;NF-kappaB binding;0.0128747258078493!GO:0006891;intra-Golgi vesicle-mediated transport;0.0129181991785878!GO:0051101;regulation of DNA binding;0.0132019034824129!GO:0004003;ATP-dependent DNA helicase activity;0.013242122188432!GO:0043624;cellular protein complex disassembly;0.0132613126334718!GO:0006984;ER-nuclear signaling pathway;0.0133229765372907!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0137086813403328!GO:0015002;heme-copper terminal oxidase activity;0.0137086813403328!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0137086813403328!GO:0004129;cytochrome-c oxidase activity;0.0137086813403328!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0138168391945699!GO:0007265;Ras protein signal transduction;0.0139206531965362!GO:0045449;regulation of transcription;0.0139923284725939!GO:0042770;DNA damage response, signal transduction;0.0140294616437285!GO:0045926;negative regulation of growth;0.0141513277169071!GO:0043022;ribosome binding;0.0141513277169071!GO:0004672;protein kinase activity;0.0141876836948059!GO:0005669;transcription factor TFIID complex;0.014214061351715!GO:0007021;tubulin folding;0.0142479375389222!GO:0043488;regulation of mRNA stability;0.0142513113248849!GO:0043487;regulation of RNA stability;0.0142513113248849!GO:0007569;cell aging;0.0149507031793588!GO:0030522;intracellular receptor-mediated signaling pathway;0.015040167273992!GO:0005680;anaphase-promoting complex;0.015040167273992!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0150482452087949!GO:0009116;nucleoside metabolic process;0.0156229224332932!GO:0016491;oxidoreductase activity;0.0156598002870907!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0156653335838728!GO:0022415;viral reproductive process;0.0164689920012521!GO:0007040;lysosome organization and biogenesis;0.01655330066559!GO:0031461;cullin-RING ubiquitin ligase complex;0.0166708461541714!GO:0000070;mitotic sister chromatid segregation;0.0167895820655317!GO:0035035;histone acetyltransferase binding;0.0171674695057818!GO:0046966;thyroid hormone receptor binding;0.0171941991816672!GO:0016791;phosphoric monoester hydrolase activity;0.0172374791450411!GO:0051098;regulation of binding;0.0172919590587443!GO:0005832;chaperonin-containing T-complex;0.0175179142098644!GO:0005652;nuclear lamina;0.0176174608251898!GO:0051287;NAD binding;0.0179946421579334!GO:0000725;recombinational repair;0.0181027150314247!GO:0000724;double-strand break repair via homologous recombination;0.0181027150314247!GO:0003779;actin binding;0.0183709196507089!GO:0050811;GABA receptor binding;0.018670920856384!GO:0046519;sphingoid metabolic process;0.0192215591561625!GO:0019867;outer membrane;0.0192215591561625!GO:0047485;protein N-terminus binding;0.0193638745533007!GO:0006505;GPI anchor metabolic process;0.0195322411840278!GO:0048518;positive regulation of biological process;0.0195322411840278!GO:0006506;GPI anchor biosynthetic process;0.0195322411840278!GO:0000819;sister chromatid segregation;0.0201430405657219!GO:0006144;purine base metabolic process;0.0203645716480237!GO:0006672;ceramide metabolic process;0.0205160308931278!GO:0031968;organelle outer membrane;0.0209940158549319!GO:0042326;negative regulation of phosphorylation;0.0210718239229727!GO:0030118;clathrin coat;0.0212193840513069!GO:0051338;regulation of transferase activity;0.0217331097717639!GO:0043065;positive regulation of apoptosis;0.0217331097717639!GO:0042393;histone binding;0.0218125277060933!GO:0006897;endocytosis;0.0218852887417437!GO:0010324;membrane invagination;0.0218852887417437!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0221083714191493!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0222242959682165!GO:0031123;RNA 3'-end processing;0.0222242959682165!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0222990382200062!GO:0046822;regulation of nucleocytoplasmic transport;0.0222990382200062!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0225492966033131!GO:0010257;NADH dehydrogenase complex assembly;0.0225492966033131!GO:0033108;mitochondrial respiratory chain complex assembly;0.0225492966033131!GO:0005083;small GTPase regulator activity;0.0228576995513045!GO:0032984;macromolecular complex disassembly;0.0229707218769084!GO:0008017;microtubule binding;0.0231953642306404!GO:0046983;protein dimerization activity;0.0237765339385205!GO:0006458;'de novo' protein folding;0.0237805005041138!GO:0051084;'de novo' posttranslational protein folding;0.0237805005041138!GO:0045045;secretory pathway;0.0237805005041138!GO:0043189;H4/H2A histone acetyltransferase complex;0.0246605366036168!GO:0000287;magnesium ion binding;0.0247189829694053!GO:0043549;regulation of kinase activity;0.0247298412966571!GO:0030659;cytoplasmic vesicle membrane;0.0248678824774912!GO:0006950;response to stress;0.0251100001986214!GO:0009112;nucleobase metabolic process;0.0251181042581329!GO:0006497;protein amino acid lipidation;0.0253781786533301!GO:0005862;muscle thin filament tropomyosin;0.0257175287153429!GO:0043068;positive regulation of programmed cell death;0.0258543996352575!GO:0006509;membrane protein ectodomain proteolysis;0.0258773415811009!GO:0033619;membrane protein proteolysis;0.0258773415811009!GO:0003746;translation elongation factor activity;0.0261327537599853!GO:0000118;histone deacetylase complex;0.0261327537599853!GO:0006378;mRNA polyadenylation;0.0263953131912883!GO:0051235;maintenance of localization;0.0266051854410272!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0266432133098252!GO:0043087;regulation of GTPase activity;0.0268411384365717!GO:0006289;nucleotide-excision repair;0.0269668536024783!GO:0031577;spindle checkpoint;0.0269933060230712!GO:0006607;NLS-bearing substrate import into nucleus;0.0270112025778344!GO:0008536;Ran GTPase binding;0.0270112025778344!GO:0005875;microtubule associated complex;0.0273025818965673!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0280957043745323!GO:0045334;clathrin-coated endocytic vesicle;0.0288450214319959!GO:0032507;maintenance of cellular protein localization;0.0288870177996721!GO:0008632;apoptotic program;0.0290857963265324!GO:0000086;G2/M transition of mitotic cell cycle;0.029507351333505!GO:0030496;midbody;0.030519624235279!GO:0009893;positive regulation of metabolic process;0.0305408704924701!GO:0000123;histone acetyltransferase complex;0.031209845227384!GO:0044454;nuclear chromosome part;0.0314151927372713!GO:0035267;NuA4 histone acetyltransferase complex;0.0317581909102473!GO:0043241;protein complex disassembly;0.0322079651116307!GO:0042158;lipoprotein biosynthetic process;0.0322770821470179!GO:0031371;ubiquitin conjugating enzyme complex;0.0324776899452651!GO:0004860;protein kinase inhibitor activity;0.032524563978015!GO:0007033;vacuole organization and biogenesis;0.032524563978015!GO:0005099;Ras GTPase activator activity;0.0325667381113412!GO:0005521;lamin binding;0.0329260455096221!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0329260455096221!GO:0016126;sterol biosynthetic process;0.0330653588956474!GO:0005663;DNA replication factor C complex;0.0334015373786496!GO:0046982;protein heterodimerization activity;0.0337751341733056!GO:0006301;postreplication repair;0.0339073739007583!GO:0008180;signalosome;0.0341129994040415!GO:0030125;clathrin vesicle coat;0.0344925573731122!GO:0030665;clathrin coated vesicle membrane;0.0344925573731122!GO:0051540;metal cluster binding;0.0345084978415173!GO:0051536;iron-sulfur cluster binding;0.0345084978415173!GO:0016569;covalent chromatin modification;0.0350749060720978!GO:0004722;protein serine/threonine phosphatase activity;0.0352352665309207!GO:0008168;methyltransferase activity;0.0355919942647811!GO:0030119;AP-type membrane coat adaptor complex;0.0360489649706398!GO:0030031;cell projection biogenesis;0.0363156163959984!GO:0010149;senescence;0.036532751998339!GO:0000209;protein polyubiquitination;0.0374364037475965!GO:0000178;exosome (RNase complex);0.0374451274181184!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0374857176343738!GO:0048144;fibroblast proliferation;0.0379787724850038!GO:0048145;regulation of fibroblast proliferation;0.0379787724850038!GO:0016741;transferase activity, transferring one-carbon groups;0.0381109194689898!GO:0048146;positive regulation of fibroblast proliferation;0.0381930001416556!GO:0005741;mitochondrial outer membrane;0.0386762445209009!GO:0031575;G1/S transition checkpoint;0.0389453395200097!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0389453395200097!GO:0007030;Golgi organization and biogenesis;0.0389453395200097!GO:0006354;RNA elongation;0.0392492101592846!GO:0016311;dephosphorylation;0.0392926462577668!GO:0007406;negative regulation of neuroblast proliferation;0.0396394579141733!GO:0043414;biopolymer methylation;0.040320084010922!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0406651407454356!GO:0030880;RNA polymerase complex;0.0407243010192845!GO:0022408;negative regulation of cell-cell adhesion;0.0407934920688067!GO:0043086;negative regulation of catalytic activity;0.0420072948724666!GO:0030911;TPR domain binding;0.0422012495128865!GO:0044433;cytoplasmic vesicle part;0.0429621049813017!GO:0032259;methylation;0.0430496334041066!GO:0031529;ruffle organization and biogenesis;0.0433677448735501!GO:0006695;cholesterol biosynthetic process;0.0440169535927188!GO:0000049;tRNA binding;0.044301065447935!GO:0045185;maintenance of protein localization;0.044578960802059!GO:0045859;regulation of protein kinase activity;0.0449537579118275!GO:0000339;RNA cap binding;0.0450100279129036!GO:0050178;phenylpyruvate tautomerase activity;0.0452152299703091!GO:0046426;negative regulation of JAK-STAT cascade;0.0452181248279195!GO:0032906;transforming growth factor-beta2 production;0.0457364010955254!GO:0032909;regulation of transforming growth factor-beta2 production;0.0457364010955254!GO:0031628;opioid receptor binding;0.0458963162441787!GO:0031852;mu-type opioid receptor binding;0.0458963162441787!GO:0005784;translocon complex;0.0466209546632265!GO:0008408;3'-5' exonuclease activity;0.0471216284020791!GO:0005881;cytoplasmic microtubule;0.0484432150547249!GO:0016407;acetyltransferase activity;0.0485385426326309!GO:0051539;4 iron, 4 sulfur cluster binding;0.0491089025906631!GO:0051651;maintenance of cellular localization;0.0492271177433196!GO:0046483;heterocycle metabolic process;0.0492302452656874!GO:0032200;telomere organization and biogenesis;0.0493377844208255!GO:0000723;telomere maintenance;0.0493377844208255 | |||
|sample_id=10647 | |sample_id=10647 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=E2F1..5:1.37233823133;RXR{A,B,G}:1.33047277231;POU1F1:1.26195268986;GFI1:1.15946924817;TFDP1:1.12204384832;NKX2-3_NKX2-5:1.06124843827;PAX1,9:0.864068453272;FOXQ1:0.842933866292;ZBTB6:0.809529412008;POU3F1..4:0.776421135483;ZNF143:0.762227515936;TFAP2B:0.748848631532;NKX3-1:0.711699445801;ARID5B:0.709438069694;ONECUT1,2:0.691691975956;PAX6:0.690742648311;NRF1:0.690212928583;TFAP2{A,C}:0.634579483249;bHLH_family:0.62651635538;BREu{core}:0.583759296599;ALX1:0.563028061443;HOX{A5,B5}:0.562709954134;CDC5L:0.550732462143;FOX{I1,J2}:0.546378788789;RFX1:0.545537748571;CDX1,2,4:0.537331814549;EGR1..3:0.479065118073;MYB:0.463642124101;GFI1B:0.459993875319;SOX2:0.455249607221;HOXA9_MEIS1:0.444398040557;PDX1:0.441308883688;TAL1_TCF{3,4,12}:0.44119165569;DMAP1_NCOR{1,2}_SMARC:0.438983902977;FOXP3:0.432798346078;NFIX:0.428215618942;RORA:0.427142228038;NKX6-1,2:0.419803078385;RBPJ:0.411627400552;SREBF1,2:0.40744335375;NFY{A,B,C}:0.394594481375;ADNP_IRX_SIX_ZHX:0.390119606992;TEAD1:0.378660367948;XCPE1{core}:0.368988370629;FOXN1:0.339475811017;ZNF384:0.317897333557;PPARG:0.317119412126;FOXD3:0.305458697591;STAT1,3:0.301155685787;MYOD1:0.292041944684;FOX{D1,D2}:0.287263038773;TFCP2:0.267854258154;GZF1:0.264382685424;HIC1:0.262102103606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.260678561791;CUX2:0.236204154284;TBX4,5:0.231234178312;NANOG:0.227750529891;HSF1,2:0.226147985107;ELK1,4_GABP{A,B1}:0.224110954075;VSX1,2:0.223765975893;BACH2:0.214589138905;MZF1:0.195085362466;MED-1{core}:0.182037372679;HOX{A4,D4}:0.179665799492;OCT4_SOX2{dimer}:0.16579641085;FOX{F1,F2,J1}:0.164747345788;MTF1:0.163631882642;HMGA1,2:0.15827336301;HAND1,2:0.152176244983;FOXM1:0.15170925335;GTF2I:0.149157794006;PRRX1,2:0.141106935726;TP53:0.139694957859;PITX1..3:0.135604990828;T:0.12841165897;BPTF:0.113891971359;HBP1_HMGB_SSRP1_UBTF:0.104988190912;EVI1:0.104222854074;LMO2:0.101106756188;PAX4:0.100556609441;NR3C1:0.0957546553053;ESRRA:0.09234443675;ZBTB16:0.0875592897409;FOS_FOS{B,L1}_JUN{B,D}:0.0705185126281;HNF1A:0.0578062965357;GTF2A1,2:0.0556514223398;AIRE:0.0528112621192;ATF4:0.0506045134683;NFE2L2:0.0462395669203;STAT5{A,B}:0.0462354949115;TLX1..3_NFIC{dimer}:0.0451401493542;SOX{8,9,10}:0.010205987712;NFATC1..3:0.0093282883263;SOX17:0.00791585471534;ZFP161:0.00706007288248;PAX8:-0.00512300764124;PRDM1:-0.0161884921868;MAZ:-0.0276509421279;DBP:-0.0277167918432;GATA6:-0.0366584910975;FOXA2:-0.0535757437249;CRX:-0.054930393049;ZNF148:-0.0632434071086;NFE2:-0.0673246690051;HNF4A_NR2F1,2:-0.0690109122886;NR1H4:-0.0772025815441;NFIL3:-0.0811320904787;LEF1_TCF7_TCF7L1,2:-0.0815777375885;NKX3-2:-0.0839498017849;HLF:-0.0970917363588;FOSL2:-0.105311593648;SPZ1:-0.105493398274;NKX2-1,4:-0.110740332576;NFKB1_REL_RELA:-0.119386050084;PBX1:-0.120397511609;POU2F1..3:-0.12454999949;PATZ1:-0.125787086605;AHR_ARNT_ARNT2:-0.159171024033;MYBL2:-0.16795517979;AR:-0.168253771362;FOXO1,3,4:-0.169889140878;RUNX1..3:-0.173520632675;NFE2L1:-0.17391585785;NHLH1,2:-0.176148302906;PAX3,7:-0.17723192358;GCM1,2:-0.193632227923;EN1,2:-0.21544758008;IRF7:-0.21950816211;HIF1A:-0.222412352102;STAT2,4,6:-0.226434624489;SNAI1..3:-0.22811685061;SMAD1..7,9:-0.234662193194;ZNF238:-0.238985693755;RXRA_VDR{dimer}:-0.25416775799;TEF:-0.256860816538;POU5F1:-0.259671466857;POU6F1:-0.277441643022;SPIB:-0.295842711069;SRF:-0.297196127212;JUN:-0.298875441311;MYFfamily:-0.300503228746;NR6A1:-0.301638900131;HOX{A6,A7,B6,B7}:-0.313607437014;SP1:-0.313884956887;XBP1:-0.315287272877;SOX5:-0.316153217582;ZEB1:-0.319615040292;LHX3,4:-0.331075645364;CEBPA,B_DDIT3:-0.335995329941;ATF2:-0.339535067429;ZIC1..3:-0.343309135937;MEF2{A,B,C,D}:-0.347782717871;GATA4:-0.348923471779;TOPORS:-0.356405847707;ATF5_CREB3:-0.362978619122;REST:-0.382892857839;ETS1,2:-0.402090102648;GLI1..3:-0.402977879736;IKZF2:-0.409073793494;FOXP1:-0.410039792311;SPI1:-0.421808339416;TFAP4:-0.428225531529;IKZF1:-0.431094741802;YY1:-0.466621447855;RREB1:-0.470426616313;UFEwm:-0.474885855092;NR5A1,2:-0.482256299855;KLF4:-0.518151972812;ZNF423:-0.526973603581;RFX2..5_RFXANK_RFXAP:-0.530472742728;HMX1:-0.531238946351;IRF1,2:-0.565821359369;PAX5:-0.568164268803;MTE{core}:-0.57889608048;ELF1,2,4:-0.587700004387;PAX2:-0.602160328176;ESR1:-0.605924770834;MAFB:-0.654619253723;TGIF1:-0.701995991754;NANOG{mouse}:-0.70911106232;EBF1:-0.719638865614;CREB1:-0.726789260439;NKX2-2,8:-0.747906797141;TBP:-0.834623115156;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.897847768788;ATF6:-1.00733764525;FOXL1:-1.1541460828;TLX2:-1.2459923268;ALX4:-1.30152158989;HES1:-1.34167174031;EP300:-1.44851587657 | |top_motifs=E2F1..5:1.37233823133;RXR{A,B,G}:1.33047277231;POU1F1:1.26195268986;GFI1:1.15946924817;TFDP1:1.12204384832;NKX2-3_NKX2-5:1.06124843827;PAX1,9:0.864068453272;FOXQ1:0.842933866292;ZBTB6:0.809529412008;POU3F1..4:0.776421135483;ZNF143:0.762227515936;TFAP2B:0.748848631532;NKX3-1:0.711699445801;ARID5B:0.709438069694;ONECUT1,2:0.691691975956;PAX6:0.690742648311;NRF1:0.690212928583;TFAP2{A,C}:0.634579483249;bHLH_family:0.62651635538;BREu{core}:0.583759296599;ALX1:0.563028061443;HOX{A5,B5}:0.562709954134;CDC5L:0.550732462143;FOX{I1,J2}:0.546378788789;RFX1:0.545537748571;CDX1,2,4:0.537331814549;EGR1..3:0.479065118073;MYB:0.463642124101;GFI1B:0.459993875319;SOX2:0.455249607221;HOXA9_MEIS1:0.444398040557;PDX1:0.441308883688;TAL1_TCF{3,4,12}:0.44119165569;DMAP1_NCOR{1,2}_SMARC:0.438983902977;FOXP3:0.432798346078;NFIX:0.428215618942;RORA:0.427142228038;NKX6-1,2:0.419803078385;RBPJ:0.411627400552;SREBF1,2:0.40744335375;NFY{A,B,C}:0.394594481375;ADNP_IRX_SIX_ZHX:0.390119606992;TEAD1:0.378660367948;XCPE1{core}:0.368988370629;FOXN1:0.339475811017;ZNF384:0.317897333557;PPARG:0.317119412126;FOXD3:0.305458697591;STAT1,3:0.301155685787;MYOD1:0.292041944684;FOX{D1,D2}:0.287263038773;TFCP2:0.267854258154;GZF1:0.264382685424;HIC1:0.262102103606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.260678561791;CUX2:0.236204154284;TBX4,5:0.231234178312;NANOG:0.227750529891;HSF1,2:0.226147985107;ELK1,4_GABP{A,B1}:0.224110954075;VSX1,2:0.223765975893;BACH2:0.214589138905;MZF1:0.195085362466;MED-1{core}:0.182037372679;HOX{A4,D4}:0.179665799492;OCT4_SOX2{dimer}:0.16579641085;FOX{F1,F2,J1}:0.164747345788;MTF1:0.163631882642;HMGA1,2:0.15827336301;HAND1,2:0.152176244983;FOXM1:0.15170925335;GTF2I:0.149157794006;PRRX1,2:0.141106935726;TP53:0.139694957859;PITX1..3:0.135604990828;T:0.12841165897;BPTF:0.113891971359;HBP1_HMGB_SSRP1_UBTF:0.104988190912;EVI1:0.104222854074;LMO2:0.101106756188;PAX4:0.100556609441;NR3C1:0.0957546553053;ESRRA:0.09234443675;ZBTB16:0.0875592897409;FOS_FOS{B,L1}_JUN{B,D}:0.0705185126281;HNF1A:0.0578062965357;GTF2A1,2:0.0556514223398;AIRE:0.0528112621192;ATF4:0.0506045134683;NFE2L2:0.0462395669203;STAT5{A,B}:0.0462354949115;TLX1..3_NFIC{dimer}:0.0451401493542;SOX{8,9,10}:0.010205987712;NFATC1..3:0.0093282883263;SOX17:0.00791585471534;ZFP161:0.00706007288248;PAX8:-0.00512300764124;PRDM1:-0.0161884921868;MAZ:-0.0276509421279;DBP:-0.0277167918432;GATA6:-0.0366584910975;FOXA2:-0.0535757437249;CRX:-0.054930393049;ZNF148:-0.0632434071086;NFE2:-0.0673246690051;HNF4A_NR2F1,2:-0.0690109122886;NR1H4:-0.0772025815441;NFIL3:-0.0811320904787;LEF1_TCF7_TCF7L1,2:-0.0815777375885;NKX3-2:-0.0839498017849;HLF:-0.0970917363588;FOSL2:-0.105311593648;SPZ1:-0.105493398274;NKX2-1,4:-0.110740332576;NFKB1_REL_RELA:-0.119386050084;PBX1:-0.120397511609;POU2F1..3:-0.12454999949;PATZ1:-0.125787086605;AHR_ARNT_ARNT2:-0.159171024033;MYBL2:-0.16795517979;AR:-0.168253771362;FOXO1,3,4:-0.169889140878;RUNX1..3:-0.173520632675;NFE2L1:-0.17391585785;NHLH1,2:-0.176148302906;PAX3,7:-0.17723192358;GCM1,2:-0.193632227923;EN1,2:-0.21544758008;IRF7:-0.21950816211;HIF1A:-0.222412352102;STAT2,4,6:-0.226434624489;SNAI1..3:-0.22811685061;SMAD1..7,9:-0.234662193194;ZNF238:-0.238985693755;RXRA_VDR{dimer}:-0.25416775799;TEF:-0.256860816538;POU5F1:-0.259671466857;POU6F1:-0.277441643022;SPIB:-0.295842711069;SRF:-0.297196127212;JUN:-0.298875441311;MYFfamily:-0.300503228746;NR6A1:-0.301638900131;HOX{A6,A7,B6,B7}:-0.313607437014;SP1:-0.313884956887;XBP1:-0.315287272877;SOX5:-0.316153217582;ZEB1:-0.319615040292;LHX3,4:-0.331075645364;CEBPA,B_DDIT3:-0.335995329941;ATF2:-0.339535067429;ZIC1..3:-0.343309135937;MEF2{A,B,C,D}:-0.347782717871;GATA4:-0.348923471779;TOPORS:-0.356405847707;ATF5_CREB3:-0.362978619122;REST:-0.382892857839;ETS1,2:-0.402090102648;GLI1..3:-0.402977879736;IKZF2:-0.409073793494;FOXP1:-0.410039792311;SPI1:-0.421808339416;TFAP4:-0.428225531529;IKZF1:-0.431094741802;YY1:-0.466621447855;RREB1:-0.470426616313;UFEwm:-0.474885855092;NR5A1,2:-0.482256299855;KLF4:-0.518151972812;ZNF423:-0.526973603581;RFX2..5_RFXANK_RFXAP:-0.530472742728;HMX1:-0.531238946351;IRF1,2:-0.565821359369;PAX5:-0.568164268803;MTE{core}:-0.57889608048;ELF1,2,4:-0.587700004387;PAX2:-0.602160328176;ESR1:-0.605924770834;MAFB:-0.654619253723;TGIF1:-0.701995991754;NANOG{mouse}:-0.70911106232;EBF1:-0.719638865614;CREB1:-0.726789260439;NKX2-2,8:-0.747906797141;TBP:-0.834623115156;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.897847768788;ATF6:-1.00733764525;FOXL1:-1.1541460828;TLX2:-1.2459923268;ALX4:-1.30152158989;HES1:-1.34167174031;EP300:-1.44851587657 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10647-109A8;search_select_hide=table117:FF:10647-109A8 | |||
}} | }} | ||
Latest revision as of 14:32, 3 June 2020
| Name: | lens epithelial cell line:SRA 01/04 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11750 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11750
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11750
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0612 |
| 10 | 10 | 0.227 |
| 100 | 100 | 0.986 |
| 101 | 101 | 0.328 |
| 102 | 102 | 0.161 |
| 103 | 103 | 0.757 |
| 104 | 104 | 0.81 |
| 105 | 105 | 0.767 |
| 106 | 106 | 0.00729 |
| 107 | 107 | 0.313 |
| 108 | 108 | 0.791 |
| 109 | 109 | 0.716 |
| 11 | 11 | 0.248 |
| 110 | 110 | 0.227 |
| 111 | 111 | 0.424 |
| 112 | 112 | 0.123 |
| 113 | 113 | 0.00403 |
| 114 | 114 | 0.15 |
| 115 | 115 | 0.409 |
| 116 | 116 | 0.0843 |
| 117 | 117 | 0.3 |
| 118 | 118 | 0.966 |
| 119 | 119 | 0.123 |
| 12 | 12 | 0.864 |
| 120 | 120 | 0.283 |
| 121 | 121 | 0.327 |
| 122 | 122 | 0.18 |
| 123 | 123 | 0.0632 |
| 124 | 124 | 0.262 |
| 125 | 125 | 0.554 |
| 126 | 126 | 0.0687 |
| 127 | 127 | 0.747 |
| 128 | 128 | 0.0179 |
| 129 | 129 | 0.409 |
| 13 | 13 | 0.297 |
| 130 | 130 | 0.16 |
| 131 | 131 | 0.0332 |
| 132 | 132 | 0.502 |
| 133 | 133 | 0.635 |
| 134 | 134 | 0.395 |
| 135 | 135 | 0.00808 |
| 136 | 136 | 0.857 |
| 137 | 137 | 0.31 |
| 138 | 138 | 0.856 |
| 139 | 139 | 0.0202 |
| 14 | 14 | 0.509 |
| 140 | 140 | 0.209 |
| 141 | 141 | 0.956 |
| 142 | 142 | 0.881 |
| 143 | 143 | 0.524 |
| 144 | 144 | 0.983 |
| 145 | 145 | 0.233 |
| 146 | 146 | 0.983 |
| 147 | 147 | 0.456 |
| 148 | 148 | 1.16048e-4 |
| 149 | 149 | 0.06 |
| 15 | 15 | 0.397 |
| 150 | 150 | 0.569 |
| 151 | 151 | 0.309 |
| 152 | 152 | 0.131 |
| 153 | 153 | 0.112 |
| 154 | 154 | 0.713 |
| 155 | 155 | 0.283 |
| 156 | 156 | 0.432 |
| 157 | 157 | 0.622 |
| 158 | 158 | 0.273 |
| 159 | 159 | 0.138 |
| 16 | 16 | 0.43 |
| 160 | 160 | 0.0311 |
| 161 | 161 | 0.304 |
| 162 | 162 | 0.457 |
| 163 | 163 | 0.767 |
| 164 | 164 | 0.893 |
| 165 | 165 | 0.153 |
| 166 | 166 | 0.673 |
| 167 | 167 | 0.247 |
| 168 | 168 | 0.144 |
| 169 | 169 | 0.0109 |
| 17 | 17 | 0.329 |
| 18 | 18 | 0.59 |
| 19 | 19 | 0.155 |
| 2 | 2 | 0.703 |
| 20 | 20 | 0.257 |
| 21 | 21 | 0.149 |
| 22 | 22 | 0.315 |
| 23 | 23 | 0.81 |
| 24 | 24 | 0.618 |
| 25 | 25 | 0.209 |
| 26 | 26 | 0.801 |
| 27 | 27 | 0.0158 |
| 28 | 28 | 0.52 |
| 29 | 29 | 0.427 |
| 3 | 3 | 0.0728 |
| 30 | 30 | 0.882 |
| 31 | 31 | 0.459 |
| 32 | 32 | 0.171 |
| 33 | 33 | 0.509 |
| 34 | 34 | 0.393 |
| 35 | 35 | 0.402 |
| 36 | 36 | 0.401 |
| 37 | 37 | 0.272 |
| 38 | 38 | 0.659 |
| 39 | 39 | 0.569 |
| 4 | 4 | 0.207 |
| 40 | 40 | 0.868 |
| 41 | 41 | 0.464 |
| 42 | 42 | 0.314 |
| 43 | 43 | 0.123 |
| 44 | 44 | 0.395 |
| 45 | 45 | 0.871 |
| 46 | 46 | 0.1 |
| 47 | 47 | 0.626 |
| 48 | 48 | 0.133 |
| 49 | 49 | 0.241 |
| 5 | 5 | 0.416 |
| 50 | 50 | 0.913 |
| 51 | 51 | 0.802 |
| 52 | 52 | 0.353 |
| 53 | 53 | 0.185 |
| 54 | 54 | 0.877 |
| 55 | 55 | 0.749 |
| 56 | 56 | 0.973 |
| 57 | 57 | 0.296 |
| 58 | 58 | 0.0161 |
| 59 | 59 | 0.0507 |
| 6 | 6 | 0.317 |
| 60 | 60 | 0.0191 |
| 61 | 61 | 0.78 |
| 62 | 62 | 0.0189 |
| 63 | 63 | 0.182 |
| 64 | 64 | 0.204 |
| 65 | 65 | 0.472 |
| 66 | 66 | 0.011 |
| 67 | 67 | 0.421 |
| 68 | 68 | 0.469 |
| 69 | 69 | 0.442 |
| 7 | 7 | 0.339 |
| 70 | 70 | 0.382 |
| 71 | 71 | 0.617 |
| 72 | 72 | 0.491 |
| 73 | 73 | 0.0845 |
| 74 | 74 | 0.897 |
| 75 | 75 | 0.245 |
| 76 | 76 | 0.786 |
| 77 | 77 | 0.201 |
| 78 | 78 | 0.134 |
| 79 | 79 | 0.185 |
| 8 | 8 | 0.152 |
| 80 | 80 | 0.472 |
| 81 | 81 | 0.257 |
| 82 | 82 | 0.00413 |
| 83 | 83 | 0.21 |
| 84 | 84 | 0.567 |
| 85 | 85 | 0.018 |
| 86 | 86 | 0.465 |
| 87 | 87 | 0.634 |
| 88 | 88 | 0.571 |
| 89 | 89 | 0.0402 |
| 9 | 9 | 0.303 |
| 90 | 90 | 0.351 |
| 91 | 91 | 0.555 |
| 92 | 92 | 0.067 |
| 93 | 93 | 0.507 |
| 94 | 94 | 0.576 |
| 95 | 95 | 0.471 |
| 96 | 96 | 0.419 |
| 97 | 97 | 0.205 |
| 98 | 98 | 0.864 |
| 99 | 99 | 0.994 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11750
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002224 lens epithelial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103071 HLEC-SRA 01/04 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000306 (crystallin accumulating cell)
0002222 (vertebrate lens cell)
0002224 (lens epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0010077 (cuboidal epithelium)
0005389 (transparent eye structure)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0000484 (simple cuboidal epithelium)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000965 (lens of camera-type eye)
0001803 (epithelium of lens)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101120 (epithelial cell line sample)
0101874 (lens epithelial cell line sample)
0103071 (HLEC-SRA 01/04 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
