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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005182
|DRA_sample_Accession=CAGE@SAMD00005182
|accession_numbers=CAGE;DRX007918;DRR008790;DRZ000215;DRZ001600
|accession_numbers=CAGE;DRX007918;DRR008790;DRZ000215;DRZ001600;DRZ011565;DRZ012950
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|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg38.nobarcode.ctss.bed.gz
|id=FF:10647-109A8
|id=FF:10647-109A8
|is_a=CL:0002224;;EFO:0002091;;FF:0000210;;FF:0103071
|is_a=CL:0002224;;EFO:0002091;;FF:0000210;;FF:0103071
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|library_id=CNhs11750
|library_id=CNhs11750
|library_id_phase_based=2:CNhs11750
|library_id_phase_based=2:CNhs11750
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10647
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10647
|name=lens epithelial cell line:SRA 01/04
|name=lens epithelial cell line:SRA 01/04
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 89: Line 99:
|top_motifs=E2F1..5:1.37233823133;RXR{A,B,G}:1.33047277231;POU1F1:1.26195268986;GFI1:1.15946924817;TFDP1:1.12204384832;NKX2-3_NKX2-5:1.06124843827;PAX1,9:0.864068453272;FOXQ1:0.842933866292;ZBTB6:0.809529412008;POU3F1..4:0.776421135483;ZNF143:0.762227515936;TFAP2B:0.748848631532;NKX3-1:0.711699445801;ARID5B:0.709438069694;ONECUT1,2:0.691691975956;PAX6:0.690742648311;NRF1:0.690212928583;TFAP2{A,C}:0.634579483249;bHLH_family:0.62651635538;BREu{core}:0.583759296599;ALX1:0.563028061443;HOX{A5,B5}:0.562709954134;CDC5L:0.550732462143;FOX{I1,J2}:0.546378788789;RFX1:0.545537748571;CDX1,2,4:0.537331814549;EGR1..3:0.479065118073;MYB:0.463642124101;GFI1B:0.459993875319;SOX2:0.455249607221;HOXA9_MEIS1:0.444398040557;PDX1:0.441308883688;TAL1_TCF{3,4,12}:0.44119165569;DMAP1_NCOR{1,2}_SMARC:0.438983902977;FOXP3:0.432798346078;NFIX:0.428215618942;RORA:0.427142228038;NKX6-1,2:0.419803078385;RBPJ:0.411627400552;SREBF1,2:0.40744335375;NFY{A,B,C}:0.394594481375;ADNP_IRX_SIX_ZHX:0.390119606992;TEAD1:0.378660367948;XCPE1{core}:0.368988370629;FOXN1:0.339475811017;ZNF384:0.317897333557;PPARG:0.317119412126;FOXD3:0.305458697591;STAT1,3:0.301155685787;MYOD1:0.292041944684;FOX{D1,D2}:0.287263038773;TFCP2:0.267854258154;GZF1:0.264382685424;HIC1:0.262102103606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.260678561791;CUX2:0.236204154284;TBX4,5:0.231234178312;NANOG:0.227750529891;HSF1,2:0.226147985107;ELK1,4_GABP{A,B1}:0.224110954075;VSX1,2:0.223765975893;BACH2:0.214589138905;MZF1:0.195085362466;MED-1{core}:0.182037372679;HOX{A4,D4}:0.179665799492;OCT4_SOX2{dimer}:0.16579641085;FOX{F1,F2,J1}:0.164747345788;MTF1:0.163631882642;HMGA1,2:0.15827336301;HAND1,2:0.152176244983;FOXM1:0.15170925335;GTF2I:0.149157794006;PRRX1,2:0.141106935726;TP53:0.139694957859;PITX1..3:0.135604990828;T:0.12841165897;BPTF:0.113891971359;HBP1_HMGB_SSRP1_UBTF:0.104988190912;EVI1:0.104222854074;LMO2:0.101106756188;PAX4:0.100556609441;NR3C1:0.0957546553053;ESRRA:0.09234443675;ZBTB16:0.0875592897409;FOS_FOS{B,L1}_JUN{B,D}:0.0705185126281;HNF1A:0.0578062965357;GTF2A1,2:0.0556514223398;AIRE:0.0528112621192;ATF4:0.0506045134683;NFE2L2:0.0462395669203;STAT5{A,B}:0.0462354949115;TLX1..3_NFIC{dimer}:0.0451401493542;SOX{8,9,10}:0.010205987712;NFATC1..3:0.0093282883263;SOX17:0.00791585471534;ZFP161:0.00706007288248;PAX8:-0.00512300764124;PRDM1:-0.0161884921868;MAZ:-0.0276509421279;DBP:-0.0277167918432;GATA6:-0.0366584910975;FOXA2:-0.0535757437249;CRX:-0.054930393049;ZNF148:-0.0632434071086;NFE2:-0.0673246690051;HNF4A_NR2F1,2:-0.0690109122886;NR1H4:-0.0772025815441;NFIL3:-0.0811320904787;LEF1_TCF7_TCF7L1,2:-0.0815777375885;NKX3-2:-0.0839498017849;HLF:-0.0970917363588;FOSL2:-0.105311593648;SPZ1:-0.105493398274;NKX2-1,4:-0.110740332576;NFKB1_REL_RELA:-0.119386050084;PBX1:-0.120397511609;POU2F1..3:-0.12454999949;PATZ1:-0.125787086605;AHR_ARNT_ARNT2:-0.159171024033;MYBL2:-0.16795517979;AR:-0.168253771362;FOXO1,3,4:-0.169889140878;RUNX1..3:-0.173520632675;NFE2L1:-0.17391585785;NHLH1,2:-0.176148302906;PAX3,7:-0.17723192358;GCM1,2:-0.193632227923;EN1,2:-0.21544758008;IRF7:-0.21950816211;HIF1A:-0.222412352102;STAT2,4,6:-0.226434624489;SNAI1..3:-0.22811685061;SMAD1..7,9:-0.234662193194;ZNF238:-0.238985693755;RXRA_VDR{dimer}:-0.25416775799;TEF:-0.256860816538;POU5F1:-0.259671466857;POU6F1:-0.277441643022;SPIB:-0.295842711069;SRF:-0.297196127212;JUN:-0.298875441311;MYFfamily:-0.300503228746;NR6A1:-0.301638900131;HOX{A6,A7,B6,B7}:-0.313607437014;SP1:-0.313884956887;XBP1:-0.315287272877;SOX5:-0.316153217582;ZEB1:-0.319615040292;LHX3,4:-0.331075645364;CEBPA,B_DDIT3:-0.335995329941;ATF2:-0.339535067429;ZIC1..3:-0.343309135937;MEF2{A,B,C,D}:-0.347782717871;GATA4:-0.348923471779;TOPORS:-0.356405847707;ATF5_CREB3:-0.362978619122;REST:-0.382892857839;ETS1,2:-0.402090102648;GLI1..3:-0.402977879736;IKZF2:-0.409073793494;FOXP1:-0.410039792311;SPI1:-0.421808339416;TFAP4:-0.428225531529;IKZF1:-0.431094741802;YY1:-0.466621447855;RREB1:-0.470426616313;UFEwm:-0.474885855092;NR5A1,2:-0.482256299855;KLF4:-0.518151972812;ZNF423:-0.526973603581;RFX2..5_RFXANK_RFXAP:-0.530472742728;HMX1:-0.531238946351;IRF1,2:-0.565821359369;PAX5:-0.568164268803;MTE{core}:-0.57889608048;ELF1,2,4:-0.587700004387;PAX2:-0.602160328176;ESR1:-0.605924770834;MAFB:-0.654619253723;TGIF1:-0.701995991754;NANOG{mouse}:-0.70911106232;EBF1:-0.719638865614;CREB1:-0.726789260439;NKX2-2,8:-0.747906797141;TBP:-0.834623115156;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.897847768788;ATF6:-1.00733764525;FOXL1:-1.1541460828;TLX2:-1.2459923268;ALX4:-1.30152158989;HES1:-1.34167174031;EP300:-1.44851587657
|top_motifs=E2F1..5:1.37233823133;RXR{A,B,G}:1.33047277231;POU1F1:1.26195268986;GFI1:1.15946924817;TFDP1:1.12204384832;NKX2-3_NKX2-5:1.06124843827;PAX1,9:0.864068453272;FOXQ1:0.842933866292;ZBTB6:0.809529412008;POU3F1..4:0.776421135483;ZNF143:0.762227515936;TFAP2B:0.748848631532;NKX3-1:0.711699445801;ARID5B:0.709438069694;ONECUT1,2:0.691691975956;PAX6:0.690742648311;NRF1:0.690212928583;TFAP2{A,C}:0.634579483249;bHLH_family:0.62651635538;BREu{core}:0.583759296599;ALX1:0.563028061443;HOX{A5,B5}:0.562709954134;CDC5L:0.550732462143;FOX{I1,J2}:0.546378788789;RFX1:0.545537748571;CDX1,2,4:0.537331814549;EGR1..3:0.479065118073;MYB:0.463642124101;GFI1B:0.459993875319;SOX2:0.455249607221;HOXA9_MEIS1:0.444398040557;PDX1:0.441308883688;TAL1_TCF{3,4,12}:0.44119165569;DMAP1_NCOR{1,2}_SMARC:0.438983902977;FOXP3:0.432798346078;NFIX:0.428215618942;RORA:0.427142228038;NKX6-1,2:0.419803078385;RBPJ:0.411627400552;SREBF1,2:0.40744335375;NFY{A,B,C}:0.394594481375;ADNP_IRX_SIX_ZHX:0.390119606992;TEAD1:0.378660367948;XCPE1{core}:0.368988370629;FOXN1:0.339475811017;ZNF384:0.317897333557;PPARG:0.317119412126;FOXD3:0.305458697591;STAT1,3:0.301155685787;MYOD1:0.292041944684;FOX{D1,D2}:0.287263038773;TFCP2:0.267854258154;GZF1:0.264382685424;HIC1:0.262102103606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.260678561791;CUX2:0.236204154284;TBX4,5:0.231234178312;NANOG:0.227750529891;HSF1,2:0.226147985107;ELK1,4_GABP{A,B1}:0.224110954075;VSX1,2:0.223765975893;BACH2:0.214589138905;MZF1:0.195085362466;MED-1{core}:0.182037372679;HOX{A4,D4}:0.179665799492;OCT4_SOX2{dimer}:0.16579641085;FOX{F1,F2,J1}:0.164747345788;MTF1:0.163631882642;HMGA1,2:0.15827336301;HAND1,2:0.152176244983;FOXM1:0.15170925335;GTF2I:0.149157794006;PRRX1,2:0.141106935726;TP53:0.139694957859;PITX1..3:0.135604990828;T:0.12841165897;BPTF:0.113891971359;HBP1_HMGB_SSRP1_UBTF:0.104988190912;EVI1:0.104222854074;LMO2:0.101106756188;PAX4:0.100556609441;NR3C1:0.0957546553053;ESRRA:0.09234443675;ZBTB16:0.0875592897409;FOS_FOS{B,L1}_JUN{B,D}:0.0705185126281;HNF1A:0.0578062965357;GTF2A1,2:0.0556514223398;AIRE:0.0528112621192;ATF4:0.0506045134683;NFE2L2:0.0462395669203;STAT5{A,B}:0.0462354949115;TLX1..3_NFIC{dimer}:0.0451401493542;SOX{8,9,10}:0.010205987712;NFATC1..3:0.0093282883263;SOX17:0.00791585471534;ZFP161:0.00706007288248;PAX8:-0.00512300764124;PRDM1:-0.0161884921868;MAZ:-0.0276509421279;DBP:-0.0277167918432;GATA6:-0.0366584910975;FOXA2:-0.0535757437249;CRX:-0.054930393049;ZNF148:-0.0632434071086;NFE2:-0.0673246690051;HNF4A_NR2F1,2:-0.0690109122886;NR1H4:-0.0772025815441;NFIL3:-0.0811320904787;LEF1_TCF7_TCF7L1,2:-0.0815777375885;NKX3-2:-0.0839498017849;HLF:-0.0970917363588;FOSL2:-0.105311593648;SPZ1:-0.105493398274;NKX2-1,4:-0.110740332576;NFKB1_REL_RELA:-0.119386050084;PBX1:-0.120397511609;POU2F1..3:-0.12454999949;PATZ1:-0.125787086605;AHR_ARNT_ARNT2:-0.159171024033;MYBL2:-0.16795517979;AR:-0.168253771362;FOXO1,3,4:-0.169889140878;RUNX1..3:-0.173520632675;NFE2L1:-0.17391585785;NHLH1,2:-0.176148302906;PAX3,7:-0.17723192358;GCM1,2:-0.193632227923;EN1,2:-0.21544758008;IRF7:-0.21950816211;HIF1A:-0.222412352102;STAT2,4,6:-0.226434624489;SNAI1..3:-0.22811685061;SMAD1..7,9:-0.234662193194;ZNF238:-0.238985693755;RXRA_VDR{dimer}:-0.25416775799;TEF:-0.256860816538;POU5F1:-0.259671466857;POU6F1:-0.277441643022;SPIB:-0.295842711069;SRF:-0.297196127212;JUN:-0.298875441311;MYFfamily:-0.300503228746;NR6A1:-0.301638900131;HOX{A6,A7,B6,B7}:-0.313607437014;SP1:-0.313884956887;XBP1:-0.315287272877;SOX5:-0.316153217582;ZEB1:-0.319615040292;LHX3,4:-0.331075645364;CEBPA,B_DDIT3:-0.335995329941;ATF2:-0.339535067429;ZIC1..3:-0.343309135937;MEF2{A,B,C,D}:-0.347782717871;GATA4:-0.348923471779;TOPORS:-0.356405847707;ATF5_CREB3:-0.362978619122;REST:-0.382892857839;ETS1,2:-0.402090102648;GLI1..3:-0.402977879736;IKZF2:-0.409073793494;FOXP1:-0.410039792311;SPI1:-0.421808339416;TFAP4:-0.428225531529;IKZF1:-0.431094741802;YY1:-0.466621447855;RREB1:-0.470426616313;UFEwm:-0.474885855092;NR5A1,2:-0.482256299855;KLF4:-0.518151972812;ZNF423:-0.526973603581;RFX2..5_RFXANK_RFXAP:-0.530472742728;HMX1:-0.531238946351;IRF1,2:-0.565821359369;PAX5:-0.568164268803;MTE{core}:-0.57889608048;ELF1,2,4:-0.587700004387;PAX2:-0.602160328176;ESR1:-0.605924770834;MAFB:-0.654619253723;TGIF1:-0.701995991754;NANOG{mouse}:-0.70911106232;EBF1:-0.719638865614;CREB1:-0.726789260439;NKX2-2,8:-0.747906797141;TBP:-0.834623115156;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.897847768788;ATF6:-1.00733764525;FOXL1:-1.1541460828;TLX2:-1.2459923268;ALX4:-1.30152158989;HES1:-1.34167174031;EP300:-1.44851587657
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10647-109A8;search_select_hide=table117:FF:10647-109A8
}}
}}

Latest revision as of 14:32, 3 June 2020

Name:lens epithelial cell line:SRA 01/04
Species:Human (Homo sapiens)
Library ID:CNhs11750
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexmale
age3 months
cell typelens epithelial cell
cell lineSRA 01/04
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005182
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11750 CAGE DRX007918 DRR008790
Accession ID Hg19

Library idBAMCTSS
CNhs11750 DRZ000215 DRZ001600
Accession ID Hg38

Library idBAMCTSS
CNhs11750 DRZ011565 DRZ012950
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0925
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.419
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0525
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0657
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0559
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0627
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.174
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0785
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.482
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.305
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.342
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11750

Jaspar motifP-value
MA0002.20.0267
MA0003.10.545
MA0004.10.0865
MA0006.10.728
MA0007.10.728
MA0009.10.699
MA0014.10.127
MA0017.10.0986
MA0018.20.907
MA0019.10.165
MA0024.11.94636e-8
MA0025.10.452
MA0027.10.968
MA0028.10.309
MA0029.10.471
MA0030.10.123
MA0031.10.925
MA0035.20.402
MA0038.14.46942e-5
MA0039.20.184
MA0040.10.865
MA0041.10.0625
MA0042.10.212
MA0043.10.336
MA0046.10.537
MA0047.20.516
MA0048.10.615
MA0050.12.61657e-4
MA0051.10.00286
MA0052.10.022
MA0055.10.283
MA0057.10.527
MA0058.10.159
MA0059.10.539
MA0060.18.06324e-6
MA0061.10.197
MA0062.20.405
MA0065.20.124
MA0066.10.769
MA0067.10.117
MA0068.10.542
MA0069.10.0634
MA0070.10.734
MA0071.10.365
MA0072.10.28
MA0073.10.707
MA0074.10.956
MA0076.10.154
MA0077.10.641
MA0078.10.647
MA0079.20.307
MA0080.22.76046e-7
MA0081.10.433
MA0083.10.607
MA0084.10.514
MA0087.10.98
MA0088.10.82
MA0090.10.0376
MA0091.10.214
MA0092.10.437
MA0093.10.0515
MA0099.29.12035e-7
MA0100.10.11
MA0101.10.357
MA0102.20.00231
MA0103.10.417
MA0104.20.809
MA0105.10.0105
MA0106.10.826
MA0107.10.678
MA0108.23.05525e-4
MA0111.10.236
MA0112.27.84827e-4
MA0113.10.814
MA0114.10.344
MA0115.10.749
MA0116.17.32257e-4
MA0117.10.497
MA0119.10.103
MA0122.10.294
MA0124.10.485
MA0125.10.439
MA0131.10.16
MA0135.10.585
MA0136.10.00787
MA0137.20.293
MA0138.20.029
MA0139.10.0587
MA0140.10.972
MA0141.10.235
MA0142.10.839
MA0143.10.241
MA0144.10.129
MA0145.10.215
MA0146.10.2
MA0147.10.841
MA0148.10.935
MA0149.10.683
MA0150.10.763
MA0152.10.916
MA0153.10.855
MA0154.10.0312
MA0155.10.398
MA0156.10.557
MA0157.10.302
MA0159.10.186
MA0160.10.391
MA0162.10.241
MA0163.10.00295
MA0164.10.793
MA0258.10.255
MA0259.10.862



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11750

Novel motifP-value
10.0612
100.227
1000.986
1010.328
1020.161
1030.757
1040.81
1050.767
1060.00729
1070.313
1080.791
1090.716
110.248
1100.227
1110.424
1120.123
1130.00403
1140.15
1150.409
1160.0843
1170.3
1180.966
1190.123
120.864
1200.283
1210.327
1220.18
1230.0632
1240.262
1250.554
1260.0687
1270.747
1280.0179
1290.409
130.297
1300.16
1310.0332
1320.502
1330.635
1340.395
1350.00808
1360.857
1370.31
1380.856
1390.0202
140.509
1400.209
1410.956
1420.881
1430.524
1440.983
1450.233
1460.983
1470.456
1481.16048e-4
1490.06
150.397
1500.569
1510.309
1520.131
1530.112
1540.713
1550.283
1560.432
1570.622
1580.273
1590.138
160.43
1600.0311
1610.304
1620.457
1630.767
1640.893
1650.153
1660.673
1670.247
1680.144
1690.0109
170.329
180.59
190.155
20.703
200.257
210.149
220.315
230.81
240.618
250.209
260.801
270.0158
280.52
290.427
30.0728
300.882
310.459
320.171
330.509
340.393
350.402
360.401
370.272
380.659
390.569
40.207
400.868
410.464
420.314
430.123
440.395
450.871
460.1
470.626
480.133
490.241
50.416
500.913
510.802
520.353
530.185
540.877
550.749
560.973
570.296
580.0161
590.0507
60.317
600.0191
610.78
620.0189
630.182
640.204
650.472
660.011
670.421
680.469
690.442
70.339
700.382
710.617
720.491
730.0845
740.897
750.245
760.786
770.201
780.134
790.185
80.152
800.472
810.257
820.00413
830.21
840.567
850.018
860.465
870.634
880.571
890.0402
90.303
900.351
910.555
920.067
930.507
940.576
950.471
960.419
970.205
980.864
990.994



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11750


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000306 (crystallin accumulating cell)
0002222 (vertebrate lens cell)
0002224 (lens epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0010077 (cuboidal epithelium)
0005389 (transparent eye structure)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0000484 (simple cuboidal epithelium)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000965 (lens of camera-type eye)
0001803 (epithelium of lens)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101120 (epithelial cell line sample)
0101874 (lens epithelial cell line sample)
0103071 (HLEC-SRA 01/04 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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