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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00005497
|ancestors_in_anatomy_facet=UBERON:0000002,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000474,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000990,UBERON:0000995,UBERON:0001062,UBERON:0001560,UBERON:0002050,UBERON:0002532,UBERON:0003100,UBERON:0003133,UBERON:0003134,UBERON:0003975,UBERON:0004120,UBERON:0004175,UBERON:0005156,UBERON:0005423,UBERON:0005795
|HumanCAGEScanFiles=NCig10056;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.NCig10056.10431-106D8.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.NCig10056.10431-106D8.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.NCig10056.10431-106D8.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.NCig10056.10431-106D8.hg19.GCTATA.pairs.bed.gz
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548
|accession_numbers=CAGE;DRX007880;DRR008752;DRZ000177;DRZ001562;DRZ011527;DRZ012912
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4,DOID:7
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0000483,UBERON:0003134,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0006955,UBERON:0004801,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002535
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:1749,DOID:4362
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0101967,FF:0103109
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.25!175.60!EHF;;chr17:7493405..7493419,-!p1@SOX15!2.15!139.99!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.12!144.78!IRF6;;chr6:10415484..10415508,-!p3@TFAP2A!1.86!70.87!TFAP2A;;chr1:209979411..209979433,-!p2@IRF6!1.77!58.07!IRF6;;chr1:201979743..201979762,+!p1@ELF3!1.62!40.66!ELF3;;chr8:10588010..10588030,-!p1@SOX7!1.61!39.96!SOX7;;chr20:56100179..56100208,-!p1@CTCFL!1.58!36.83!CTCFL;;chr6:10415276..10415341,-!p2@TFAP2A!1.56!42.75!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.67!TFAP2A;;chr11:34645791..34645836,+!p3@EHF!1.50!30.82!EHF;;chr1:6479968..6479986,-!p1@HES2!1.46!27.68!HES2;;chr5:1882170..1882182,-!p3@IRX4!1.46!27.60!IRX4;;chr3:189507432..189507459,+!p1@TP63!1.44!26.73!TP63;;chr2:114036488..114036504,-!p1@PAX8!1.43!26.20!PAX8;;chr1:201979703..201979721,+!p2@ELF3!1.42!25.16!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.41!24.90!GRHL2;;chr11:34642656..34642667,+!p2@EHF!1.41!24.64!EHF;;chr5:1882184..1882203,-!p4@IRX4!1.39!23.68!IRX4;;chr17:7492684..7492778,-!p2@SOX15!1.38!48.06!SOX15;;chr2:176969228..176969260,+!p1@HOXD11!1.38!22.81!HOXD11;;chr15:83953397..83953425,-!p1@BNC1!1.35!24.55!BNC1;;chr3:111314186..111314204,-!p1@ZBED2!1.29!18.46!ZBED2;;chr11:65667884..65667895,-!p2@FOSL1!1.24!63.12!FOSL1;;chr13:73633131..73633149,+!p1@KLF5!1.21!159.93!KLF5;;chr17:7197911..7197964,-!p1@YBX2!1.20!14.80!YBX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.16!17.06!TFAP2C;;chr2:176969179..176969226,+!p2@HOXD11!1.16!13.58!HOXD11;;chr20:50721803..50721857,-!p2@ZFP64!1.14!20.11!ZFP64;;chr3:169381420..169381535,-!p1@MECOM!1.14!15.06!MECOM;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.62!HOXB6;;chr17:8027418..8027432,-!p1@HES7!1.13!12.62!HES7;;chr11:65667846..65667868,-!p1@FOSL1!1.09!299.48!FOSL1;;chr2:45236540..45236577,-!p1@SIX2!1.08!11.14!SIX2;;chr14:37131058..37131139,+!p1@PAX9!1.08!10.97!PAX9;;chr7:27205106..27205134,-!p2@HOXA9!1.08!10.97!HOXA9;;chr10:8096631..8096660,+!p1@GATA3!1.05!12.36!GATA3;;chr11:65668011..65668020,-!p3@FOSL1!1.05!10.27!FOSL1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.04!89.50!PPP1R13L;;chr17:46687959..46688007,-!p2@HOXB7!1.04!13.76!HOXB7;;chr20:42295713..42295738,+!p2@MYBL2!1.02!57.11!MYBL2;;chr11:65686732..65686756,+!p2@DRAP1!1.02!40.40!DRAP1;;chr6:126240380..126240430,+!p2@NCOA7!1.02!25.16!NCOA7;;chr11:65686802..65686818,+!p6@DRAP1!1.01!16.45!DRAP1;;chr6:45390300..45390335,+!p4@RUNX2!1.01!14.54!RUNX2;;chr6:10413188..10413249,-!p7@TFAP2A!1.00!9.05!TFAP2A;;chr2:238592039..238592054,+!p4@LRRFIP1!1.00!9.05!LRRFIP1;;chr12:54785074..54785122,-!p2@ZNF385A!0.99!13.76!ZNF385A;;chr14:55493763..55493824,-!p1@WDHD1!0.98!65.73!WDHD1;;chr22:24093154..24093183,-!p2@ZNF70!0.98!8.53!ZNF70;;chr8:102504979..102505010,+!p2@GRHL2!0.98!8.44!GRHL2;;chr20:42295745..42295765,+!p1@MYBL2!0.97!141.12!MYBL2;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.98!ARNTL2;;chr6:10419768..10419819,-!p6@TFAP2A!0.97!8.36!TFAP2A;;chr6:10412576..10412599,-!p5@TFAP2A!0.96!8.10!TFAP2A;;chr17:70117153..70117174,+!p1@SOX9!0.95!83.58!SOX9;;chr2:46524897..46524911,+!p2@EPAS1!0.95!22.64!EPAS1;;chr9:124976154..124976177,-!p5@LHX6!0.94!7.75!LHX6;;chr19:48773337..48773339,+!p2@ZNF114!0.94!7.75!ZNF114;;chr8:99956662..99956684,+!p1@OSR2!0.93!11.67!OSR2;;chr17:38020392..38020477,-!p1@IKZF3!0.93!7.57!IKZF3;;chr7:27205136..27205164,-!p1@HOXA9!0.92!7.40!HOXA9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.92!7.31!ZBED1;;chr1:209979375..209979386,-!p4@IRF6!0.92!7.23!IRF6;;chr15:67418119..67418162,+!p5@SMAD3!0.91!8.01!SMAD3;;chr9:124976185..124976212,-!p4@LHX6!0.91!7.14!LHX6;;chr17:41277372..41277418,-!p1@BRCA1!0.90!26.03!BRCA1;;chr6:45390025..45390076,+!p2@RUNX2!0.90!17.15!RUNX2;;chr3:168864315..168864339,-!p2@MECOM!0.90!11.84!MECOM;;chr10:8096772..8096787,+!p2@GATA3!0.90!8.27!GATA3;;chr6:10412392..10412409,-!p4@TFAP2A!0.90!7.92!TFAP2A;;chr14:61116183..61116208,-!p1@SIX1!0.89!26.99!SIX1;;chr12:80084737..80084763,-!p3@PAWR!0.89!26.64!PAWR;;chr6:45390269..45390298,+!p5@RUNX2!0.89!11.58!RUNX2;;chr2:176969124..176969155,+!p5@HOXD11!0.89!6.79!HOXD11;;chr7:27196267..27196311,-!p1@HOXA7!0.89!6.70!HOXA7;;chr17:46688334..46688385,-!p1@HOXB7!0.88!9.75!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.88!9.32!FOXF2;;chr6:126240442..126240459,+!p4@NCOA7!0.88!8.44!NCOA7;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.87!6.44!EN2;;chr5:2751762..2751784,-!p1@IRX2!0.87!6.36!IRX2;;chr7:27153454..27153469,-!p2@HOXA3!0.87!6.36!HOXA3;;chr11:47236584..47236679,+!p1@DDB2!0.86!73.04!DDB2;;chr6:45390002..45390023,+!p6@RUNX2!0.85!10.97!RUNX2;;chr6:28048343..28048354,+!p1@ZNF165!0.85!6.09!ZNF165;;chr9:100615499..100615519,+!p1@FOXE1!0.85!6.09!FOXE1;;chr17:48072574..48072597,-!p1@DLX3!0.85!6.01!DLX3;;chr10:51572408..51572454,+!p3@NCOA4!0.84!36.39!NCOA4;;chr1:158979872..158979898,+!p3@IFI16!0.84!19.07!IFI16;;chr2:172967621..172967637,-!p1@DLX2!0.83!16.28!DLX2;;chr14:38064429..38064486,-!p1@FOXA1!0.83!5.83!FOXA1;;chr6:10419824..10419840,-!p9@TFAP2A!0.83!5.83!TFAP2A;;chr21:36421535..36421610,-!p2@RUNX1!0.82!21.50!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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
|fonse_cell_line=FF:0101120,FF:0101967
|fonse_cell_line=FF:0101120,FF:0101967
|fonse_cell_line_closure=FF:0101120,FF:0101967
|fonse_cell_line_closure=FF:0101120,FF:0101967
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.CNhs10748.10431-106D8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.CNhs10748.10431-106D8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.CNhs10748.10431-106D8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.CNhs10748.10431-106D8.hg38.nobarcode.ctss.bed.gz
|id=FF:10431-106D8
|id=FF:10431-106D8
|is_a=CL:0002535;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102024;;FF:0103109
|is_a=CL:0002535;;EFO:0002091;;FF:0000210;;FF:0102024;;FF:0103109
|is_obsolete=
|library_id=CNhs10748
|library_id_phase_based=2:CNhs10748
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10431
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10431
|name=epidermoid carcinoma cell line:Ca Ski
|name=epidermoid carcinoma cell line:Ca Ski
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 61:
|profile_cagescan=NCig10056,,,
|profile_cagescan=NCig10056,,,
|profile_hcage=CNhs10748,LSID692,release008,COMPLETED
|profile_hcage=CNhs10748,LSID692,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_box=106
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 79:
|rna_weight_ug=54.53125
|rna_weight_ug=54.53125
|sample_age=40
|sample_age=40
|sample_category=cell lines
|sample_cell_catalog=RCB1947
|sample_cell_catalog=RCB1947
|sample_cell_line=Ca Ski
|sample_cell_line=Ca Ski
Line 69: Line 92:
|sample_ethnicity=unknown
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.35287784195853e-254!GO:0043226;organelle;3.13791942631006e-208!GO:0043229;intracellular organelle;1.20136654687381e-207!GO:0043231;intracellular membrane-bound organelle;6.59399004210517e-196!GO:0043227;membrane-bound organelle;8.33535123152471e-196!GO:0005737;cytoplasm;1.90179345484906e-172!GO:0044422;organelle part;2.02100105006809e-167!GO:0044446;intracellular organelle part;7.45924957042183e-166!GO:0044444;cytoplasmic part;8.78983081213785e-113!GO:0032991;macromolecular complex;2.36053317501289e-112!GO:0005634;nucleus;1.84338894352023e-93!GO:0044238;primary metabolic process;3.9378287980986e-89!GO:0044428;nuclear part;6.01381537854211e-88!GO:0044237;cellular metabolic process;2.1944319811377e-87!GO:0005515;protein binding;3.42312069637152e-87!GO:0043170;macromolecule metabolic process;3.52711365075914e-86!GO:0030529;ribonucleoprotein complex;3.29332791948639e-80!GO:0043233;organelle lumen;6.80963199311747e-75!GO:0031974;membrane-enclosed lumen;6.80963199311747e-75!GO:0003723;RNA binding;7.92987365775579e-71!GO:0043234;protein complex;1.27061762439467e-61!GO:0005739;mitochondrion;2.95926655328658e-59!GO:0016043;cellular component organization and biogenesis;7.13457157075983e-57!GO:0043228;non-membrane-bound organelle;6.14128972255954e-55!GO:0043232;intracellular non-membrane-bound organelle;6.14128972255954e-55!GO:0006396;RNA processing;3.0548055725797e-52!GO:0043283;biopolymer metabolic process;1.98439521535129e-51!GO:0006412;translation;8.41937734036807e-50!GO:0019538;protein metabolic process;1.83072605937641e-49!GO:0031981;nuclear lumen;3.29781804282739e-49!GO:0005840;ribosome;7.17535441607859e-47!GO:0031090;organelle membrane;1.55692570027128e-45!GO:0006996;organelle organization and biogenesis;2.02612882998987e-45!GO:0006259;DNA metabolic process;9.01890900797687e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.78628556035573e-44!GO:0044267;cellular protein metabolic process;2.31769821002248e-44!GO:0044260;cellular macromolecule metabolic process;4.4815707426214e-44!GO:0033036;macromolecule localization;4.46992751640667e-43!GO:0007049;cell cycle;7.39968222991757e-43!GO:0015031;protein transport;9.86524148249568e-43!GO:0003735;structural constituent of ribosome;3.1088032745409e-41!GO:0016071;mRNA metabolic process;2.58645891240494e-40!GO:0010467;gene expression;4.00550857043954e-40!GO:0031967;organelle envelope;6.22520985806516e-40!GO:0044429;mitochondrial part;1.32647810523896e-39!GO:0031975;envelope;1.5009015065944e-39!GO:0046907;intracellular transport;6.38033008637296e-39!GO:0008104;protein localization;1.09672530191881e-38!GO:0045184;establishment of protein localization;4.3017990966169e-38!GO:0005829;cytosol;6.05153208925858e-37!GO:0008380;RNA splicing;1.75501447087698e-36!GO:0044249;cellular biosynthetic process;2.00434629185692e-36!GO:0006397;mRNA processing;6.9154532352578e-36!GO:0009058;biosynthetic process;9.8191199037107e-36!GO:0065003;macromolecular complex assembly;1.86738224379595e-35!GO:0009059;macromolecule biosynthetic process;3.52723113056028e-35!GO:0033279;ribosomal subunit;2.1721790168254e-34!GO:0022402;cell cycle process;6.81109248319867e-34!GO:0022607;cellular component assembly;4.54262553926592e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.99187692838769e-33!GO:0005654;nucleoplasm;1.19596576152098e-30!GO:0006886;intracellular protein transport;1.53447448323345e-30!GO:0000278;mitotic cell cycle;1.55729100251521e-29!GO:0005694;chromosome;1.61201950413699e-29!GO:0000166;nucleotide binding;2.20133528977817e-29!GO:0006974;response to DNA damage stimulus;1.88932138879177e-27!GO:0044427;chromosomal part;2.32204576199667e-26!GO:0022403;cell cycle phase;2.63410197290122e-26!GO:0005681;spliceosome;3.49702886046351e-26!GO:0051649;establishment of cellular localization;9.81931031645345e-26!GO:0051641;cellular localization;1.45096528065472e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.47357741165656e-25!GO:0005740;mitochondrial envelope;7.98003262391745e-25!GO:0016462;pyrophosphatase activity;3.57752617869999e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.94062268630308e-24!GO:0019866;organelle inner membrane;6.85235610023064e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;7.25153738691858e-24!GO:0031966;mitochondrial membrane;7.38012488157802e-24!GO:0044451;nucleoplasm part;1.0947730089309e-23!GO:0017111;nucleoside-triphosphatase activity;1.7724703692594e-23!GO:0003676;nucleic acid binding;2.06089796911736e-23!GO:0006281;DNA repair;7.76667127730239e-23!GO:0032553;ribonucleotide binding;4.99535701177898e-22!GO:0032555;purine ribonucleotide binding;4.99535701177898e-22!GO:0044445;cytosolic part;9.78338993787703e-22!GO:0000279;M phase;1.29966631316845e-21!GO:0005743;mitochondrial inner membrane;1.52768151724525e-21!GO:0000087;M phase of mitotic cell cycle;1.7162122614177e-21!GO:0017076;purine nucleotide binding;1.84424777848454e-21!GO:0007067;mitosis;3.92651687810459e-21!GO:0051301;cell division;4.17652623781828e-21!GO:0012505;endomembrane system;2.53334257353526e-20!GO:0016874;ligase activity;2.9359935399842e-20!GO:0051276;chromosome organization and biogenesis;6.21636392806512e-20!GO:0005730;nucleolus;8.38336957893944e-20!GO:0009719;response to endogenous stimulus;9.12202949300224e-20!GO:0005524;ATP binding;1.17794029770971e-19!GO:0032559;adenyl ribonucleotide binding;1.86345043672846e-19!GO:0006119;oxidative phosphorylation;2.254714839236e-19!GO:0006260;DNA replication;2.46227450767864e-19!GO:0022618;protein-RNA complex assembly;4.7144439197517e-19!GO:0044265;cellular macromolecule catabolic process;8.54890529259623e-19!GO:0030554;adenyl nucleotide binding;1.00697339941524e-18!GO:0015935;small ribosomal subunit;3.57453744822428e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;4.53519164710667e-18!GO:0006512;ubiquitin cycle;5.89683602431206e-18!GO:0019941;modification-dependent protein catabolic process;7.83786758719058e-18!GO:0043632;modification-dependent macromolecule catabolic process;7.83786758719058e-18!GO:0006511;ubiquitin-dependent protein catabolic process;8.49250374745038e-18!GO:0016070;RNA metabolic process;1.27813261558779e-17!GO:0044455;mitochondrial membrane part;1.28458474552171e-17!GO:0044257;cellular protein catabolic process;1.54115468240927e-17!GO:0043285;biopolymer catabolic process;1.68014055674143e-17!GO:0000502;proteasome complex (sensu Eukaryota);2.77344537341713e-17!GO:0015934;large ribosomal subunit;2.90691980749747e-17!GO:0006457;protein folding;3.23922985722019e-17!GO:0031980;mitochondrial lumen;3.64385253448575e-17!GO:0005759;mitochondrial matrix;3.64385253448575e-17!GO:0008134;transcription factor binding;7.55319518505741e-17!GO:0009057;macromolecule catabolic process;1.3317333350664e-16!GO:0006605;protein targeting;2.55056913035564e-16!GO:0005635;nuclear envelope;4.21808017912328e-16!GO:0048770;pigment granule;1.0578660771264e-15!GO:0042470;melanosome;1.0578660771264e-15!GO:0051726;regulation of cell cycle;1.82914540297961e-15!GO:0000074;regulation of progression through cell cycle;2.24737775339549e-15!GO:0030163;protein catabolic process;2.72881803146304e-15!GO:0044453;nuclear membrane part;5.13350477612181e-15!GO:0008135;translation factor activity, nucleic acid binding;5.66557690808957e-15!GO:0031965;nuclear membrane;6.35098745383543e-15!GO:0042254;ribosome biogenesis and assembly;7.72964354132794e-15!GO:0043412;biopolymer modification;1.38986089668906e-14!GO:0044248;cellular catabolic process;2.33427583484781e-14!GO:0012501;programmed cell death;5.36733803239393e-14!GO:0005794;Golgi apparatus;5.68709092794864e-14!GO:0005783;endoplasmic reticulum;6.14524246480002e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;6.6598953126299e-14!GO:0006366;transcription from RNA polymerase II promoter;6.6598953126299e-14!GO:0044432;endoplasmic reticulum part;7.36278870348259e-14!GO:0006915;apoptosis;7.82861813979856e-14!GO:0005746;mitochondrial respiratory chain;9.92327682283463e-14!GO:0016887;ATPase activity;1.04034863976432e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.17285908573686e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.17285908573686e-13!GO:0000375;RNA splicing, via transesterification reactions;2.17285908573686e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.17285908573686e-13!GO:0005761;mitochondrial ribosome;2.21694197741931e-13!GO:0000313;organellar ribosome;2.21694197741931e-13!GO:0006323;DNA packaging;2.47020048353388e-13!GO:0051186;cofactor metabolic process;3.11945028133439e-13!GO:0006913;nucleocytoplasmic transport;5.24648979659988e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.68921309506903e-13!GO:0004386;helicase activity;6.40155971706918e-13!GO:0005643;nuclear pore;8.31429675088954e-13!GO:0050657;nucleic acid transport;9.05312906399273e-13!GO:0051236;establishment of RNA localization;9.05312906399273e-13!GO:0050658;RNA transport;9.05312906399273e-13!GO:0006403;RNA localization;9.42875600186727e-13!GO:0051082;unfolded protein binding;9.42875600186727e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.06190877881383e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.37247088885278e-12!GO:0003954;NADH dehydrogenase activity;1.37247088885278e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.37247088885278e-12!GO:0006464;protein modification process;1.54060527033629e-12!GO:0051169;nuclear transport;1.74703865242516e-12!GO:0000785;chromatin;2.02402473381268e-12!GO:0048193;Golgi vesicle transport;2.04694563969449e-12!GO:0042623;ATPase activity, coupled;2.10716494221751e-12!GO:0006413;translational initiation;2.31214633907697e-12!GO:0008219;cell death;3.06073623778625e-12!GO:0016265;death;3.06073623778625e-12!GO:0003743;translation initiation factor activity;3.29135569225744e-12!GO:0043687;post-translational protein modification;3.85263556874694e-12!GO:0015630;microtubule cytoskeleton;1.15660254043184e-11!GO:0006446;regulation of translational initiation;1.46080229539136e-11!GO:0006399;tRNA metabolic process;2.48942070742908e-11!GO:0006732;coenzyme metabolic process;2.57298215509134e-11!GO:0008639;small protein conjugating enzyme activity;2.73950090700546e-11!GO:0016604;nuclear body;4.24114066347451e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.60523798603742e-11!GO:0042773;ATP synthesis coupled electron transport;4.60523798603742e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.82249398936351e-11!GO:0065004;protein-DNA complex assembly;6.06815958282186e-11!GO:0016192;vesicle-mediated transport;6.82026107519862e-11!GO:0004842;ubiquitin-protein ligase activity;6.98950076599012e-11!GO:0000775;chromosome, pericentric region;9.39594547391412e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.45561496547005e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.23412358103042e-10!GO:0045271;respiratory chain complex I;1.23412358103042e-10!GO:0005747;mitochondrial respiratory chain complex I;1.23412358103042e-10!GO:0051028;mRNA transport;1.33205878865065e-10!GO:0065002;intracellular protein transport across a membrane;1.42068735158491e-10!GO:0008026;ATP-dependent helicase activity;1.43251031631002e-10!GO:0019787;small conjugating protein ligase activity;1.44946654201125e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.61408561907353e-10!GO:0006333;chromatin assembly or disassembly;1.63191345456967e-10!GO:0046930;pore complex;1.66111615172436e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.76559489395879e-10!GO:0003712;transcription cofactor activity;2.12986016367399e-10!GO:0009055;electron carrier activity;3.09098699127392e-10!GO:0005789;endoplasmic reticulum membrane;3.6611629392876e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.72857396852016e-10!GO:0016881;acid-amino acid ligase activity;7.47465436622553e-10!GO:0006364;rRNA processing;7.93579666803811e-10!GO:0048523;negative regulation of cellular process;8.44902575343063e-10!GO:0006461;protein complex assembly;1.02538559184591e-09!GO:0016072;rRNA metabolic process;1.04390669760064e-09!GO:0042981;regulation of apoptosis;1.05558925014712e-09!GO:0017038;protein import;1.35470570969121e-09!GO:0043067;regulation of programmed cell death;1.39997503167776e-09!GO:0005819;spindle;1.92228943063977e-09!GO:0043566;structure-specific DNA binding;3.73748367415702e-09!GO:0008565;protein transporter activity;4.42537290440976e-09!GO:0051246;regulation of protein metabolic process;4.73929487983846e-09!GO:0051329;interphase of mitotic cell cycle;6.35844681156388e-09!GO:0009259;ribonucleotide metabolic process;6.67347905603755e-09!GO:0016607;nuclear speck;9.72327744756242e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.13587372899799e-08!GO:0006261;DNA-dependent DNA replication;1.15284470509858e-08!GO:0051325;interphase;1.49133908923109e-08!GO:0050794;regulation of cellular process;1.68286520131755e-08!GO:0006163;purine nucleotide metabolic process;1.864176079034e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.23282524027248e-08!GO:0009056;catabolic process;2.46894554456105e-08!GO:0007005;mitochondrion organization and biogenesis;2.68368329653291e-08!GO:0005793;ER-Golgi intermediate compartment;2.93914136633965e-08!GO:0016568;chromatin modification;3.01154631053025e-08!GO:0032446;protein modification by small protein conjugation;3.39387273870182e-08!GO:0031324;negative regulation of cellular metabolic process;3.80934327738844e-08!GO:0016567;protein ubiquitination;4.00871179718564e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.58268853836388e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.58268853836388e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.58268853836388e-08!GO:0016779;nucleotidyltransferase activity;4.62963622263623e-08!GO:0048519;negative regulation of biological process;4.83910734057984e-08!GO:0003697;single-stranded DNA binding;4.95493184811917e-08!GO:0007051;spindle organization and biogenesis;5.35202555593704e-08!GO:0016787;hydrolase activity;6.17949087373693e-08!GO:0051188;cofactor biosynthetic process;6.30501464870266e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.42146900152156e-08!GO:0043038;amino acid activation;8.04938631585027e-08!GO:0006418;tRNA aminoacylation for protein translation;8.04938631585027e-08!GO:0043039;tRNA aminoacylation;8.04938631585027e-08!GO:0007010;cytoskeleton organization and biogenesis;8.07688452829925e-08!GO:0015986;ATP synthesis coupled proton transport;8.72514540770873e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.72514540770873e-08!GO:0000075;cell cycle checkpoint;9.43336631431707e-08!GO:0005667;transcription factor complex;1.027621456128e-07!GO:0009260;ribonucleotide biosynthetic process;1.08758864469238e-07!GO:0006334;nucleosome assembly;1.11342865568042e-07!GO:0006164;purine nucleotide biosynthetic process;1.12746041314239e-07!GO:0009150;purine ribonucleotide metabolic process;1.26178919715038e-07!GO:0005768;endosome;1.46429432951873e-07!GO:0005813;centrosome;1.46718121555129e-07!GO:0048475;coated membrane;1.59568872659655e-07!GO:0030117;membrane coat;1.59568872659655e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.87172119750989e-07!GO:0031497;chromatin assembly;1.97993478257112e-07!GO:0005815;microtubule organizing center;2.13288006281728e-07!GO:0005657;replication fork;2.23646142232837e-07!GO:0009060;aerobic respiration;2.25339244062124e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.39216728258367e-07!GO:0003924;GTPase activity;2.5497515206197e-07!GO:0051170;nuclear import;2.59818627803568e-07!GO:0043623;cellular protein complex assembly;2.89285694253644e-07!GO:0009108;coenzyme biosynthetic process;3.01366342939175e-07!GO:0043069;negative regulation of programmed cell death;3.60023136615764e-07!GO:0009892;negative regulation of metabolic process;5.11134194930383e-07!GO:0046034;ATP metabolic process;5.74082686709411e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.91954846817054e-07!GO:0006793;phosphorus metabolic process;5.92521838607352e-07!GO:0006796;phosphate metabolic process;5.92521838607352e-07!GO:0006916;anti-apoptosis;6.31669576762555e-07!GO:0009141;nucleoside triphosphate metabolic process;6.32681657627711e-07!GO:0030120;vesicle coat;6.36782395787675e-07!GO:0030662;coated vesicle membrane;6.36782395787675e-07!GO:0043066;negative regulation of apoptosis;6.42273929391663e-07!GO:0016740;transferase activity;6.87653996856881e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.42322815618795e-07!GO:0009152;purine ribonucleotide biosynthetic process;7.74054351630626e-07!GO:0006606;protein import into nucleus;9.62331036638142e-07!GO:0006754;ATP biosynthetic process;1.0306174267101e-06!GO:0006753;nucleoside phosphate metabolic process;1.0306174267101e-06!GO:0019899;enzyme binding;1.26736932013953e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.28090270134009e-06!GO:0019829;cation-transporting ATPase activity;1.35207067719359e-06!GO:0016563;transcription activator activity;1.37507675694775e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.41067193715331e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.41067193715331e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.42639773345358e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.51483588449151e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.9050476240847e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.9050476240847e-06!GO:0004298;threonine endopeptidase activity;1.90787395920679e-06!GO:0007059;chromosome segregation;2.08026070573342e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.1278712807897e-06!GO:0045786;negative regulation of progression through cell cycle;2.19482304110872e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.37911706993628e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.38908460215499e-06!GO:0045333;cellular respiration;2.65191909795142e-06!GO:0006099;tricarboxylic acid cycle;3.30350543751602e-06!GO:0046356;acetyl-CoA catabolic process;3.30350543751602e-06!GO:0048522;positive regulation of cellular process;3.38379419703197e-06!GO:0000245;spliceosome assembly;3.38502337472225e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.43101965168738e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.69667412785058e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.69667412785058e-06!GO:0009117;nucleotide metabolic process;3.85939705538625e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.62926437058871e-06!GO:0045259;proton-transporting ATP synthase complex;4.68465723974372e-06!GO:0051427;hormone receptor binding;5.63965580261513e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.20353700751004e-06!GO:0000228;nuclear chromosome;6.3995930411918e-06!GO:0006752;group transfer coenzyme metabolic process;6.47275981682753e-06!GO:0008094;DNA-dependent ATPase activity;6.56690667521097e-06!GO:0006302;double-strand break repair;6.69202889019205e-06!GO:0000151;ubiquitin ligase complex;6.70630680130152e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.3300486064253e-06!GO:0003690;double-stranded DNA binding;8.05786156474628e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;8.61918806643871e-06!GO:0006084;acetyl-CoA metabolic process;8.76977874270934e-06!GO:0003899;DNA-directed RNA polymerase activity;1.14420144536377e-05!GO:0044431;Golgi apparatus part;1.18456568670329e-05!GO:0003682;chromatin binding;1.22382861897634e-05!GO:0035257;nuclear hormone receptor binding;1.27374504702944e-05!GO:0003724;RNA helicase activity;1.28768970129547e-05!GO:0006613;cotranslational protein targeting to membrane;1.53885672663934e-05!GO:0016310;phosphorylation;1.56440909253916e-05!GO:0003713;transcription coactivator activity;1.70983713944155e-05!GO:0051168;nuclear export;1.74550547320846e-05!GO:0007017;microtubule-based process;1.79565315064725e-05!GO:0016564;transcription repressor activity;1.92991512904161e-05!GO:0042802;identical protein binding;2.04375447900934e-05!GO:0000082;G1/S transition of mitotic cell cycle;2.31506157059993e-05!GO:0044440;endosomal part;2.31506157059993e-05!GO:0010008;endosome membrane;2.31506157059993e-05!GO:0005525;GTP binding;2.63009422457783e-05!GO:0016481;negative regulation of transcription;2.65060576378408e-05!GO:0005788;endoplasmic reticulum lumen;2.82082860800961e-05!GO:0031252;leading edge;3.207509336172e-05!GO:0009109;coenzyme catabolic process;3.42802261045493e-05!GO:0003684;damaged DNA binding;3.66342601500032e-05!GO:0016363;nuclear matrix;3.70666451389543e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;3.88489220059421e-05!GO:0007243;protein kinase cascade;3.88489220059421e-05!GO:0005798;Golgi-associated vesicle;3.9964267588028e-05!GO:0000776;kinetochore;4.61148003584538e-05!GO:0050789;regulation of biological process;4.8883693004147e-05!GO:0007088;regulation of mitosis;4.8883693004147e-05!GO:0044454;nuclear chromosome part;5.8622147414462e-05!GO:0006950;response to stress;6.93538340221781e-05!GO:0006839;mitochondrial transport;7.33214871675091e-05!GO:0051187;cofactor catabolic process;7.39828879828433e-05!GO:0048471;perinuclear region of cytoplasm;7.8919632985765e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.41602436693705e-05!GO:0016853;isomerase activity;8.5487053974321e-05!GO:0008033;tRNA processing;9.78111806775086e-05!GO:0005874;microtubule;0.000102728868720704!GO:0000314;organellar small ribosomal subunit;0.000113041682154581!GO:0005763;mitochondrial small ribosomal subunit;0.000113041682154581!GO:0043021;ribonucleoprotein binding;0.000116317017254456!GO:0007052;mitotic spindle organization and biogenesis;0.000124898866265487!GO:0006310;DNA recombination;0.000139203459836334!GO:0051052;regulation of DNA metabolic process;0.000144056923267017!GO:0008654;phospholipid biosynthetic process;0.000146028246620314!GO:0003729;mRNA binding;0.000146308582677827!GO:0030036;actin cytoskeleton organization and biogenesis;0.000175930054389029!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000181387343350742!GO:0051252;regulation of RNA metabolic process;0.000184101714687226!GO:0000139;Golgi membrane;0.000189490310617492!GO:0065009;regulation of a molecular function;0.000189664622864948!GO:0045893;positive regulation of transcription, DNA-dependent;0.000194478735007278!GO:0007093;mitotic cell cycle checkpoint;0.000202851690914745!GO:0003714;transcription corepressor activity;0.00020311127593971!GO:0005856;cytoskeleton;0.000215719951732181!GO:0005048;signal sequence binding;0.000226929911249703!GO:0008186;RNA-dependent ATPase activity;0.000232793285759916!GO:0051789;response to protein stimulus;0.000262567145368058!GO:0006986;response to unfolded protein;0.000262567145368058!GO:0019222;regulation of metabolic process;0.000265650625983475!GO:0000786;nucleosome;0.000267461496758895!GO:0003678;DNA helicase activity;0.000268231461956941!GO:0007264;small GTPase mediated signal transduction;0.000298749666019545!GO:0030867;rough endoplasmic reticulum membrane;0.000299282920419349!GO:0005762;mitochondrial large ribosomal subunit;0.000302243224296369!GO:0000315;organellar large ribosomal subunit;0.000302243224296369!GO:0006352;transcription initiation;0.000317987400965202!GO:0032561;guanyl ribonucleotide binding;0.000342981337296659!GO:0019001;guanyl nucleotide binding;0.000342981337296659!GO:0030118;clathrin coat;0.000411606595106055!GO:0045454;cell redox homeostasis;0.000433778811807456!GO:0000059;protein import into nucleus, docking;0.00048434157570428!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000484677143242843!GO:0006383;transcription from RNA polymerase III promoter;0.000514523194602266!GO:0006402;mRNA catabolic process;0.000558773347321384!GO:0006612;protein targeting to membrane;0.000569627666410152!GO:0005885;Arp2/3 protein complex;0.000612242280144222!GO:0004004;ATP-dependent RNA helicase activity;0.000644694965729907!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000646474088759588!GO:0005770;late endosome;0.000654696266277082!GO:0000793;condensed chromosome;0.000663851087299457!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000695546703398389!GO:0044452;nucleolar part;0.000695546703398389!GO:0001558;regulation of cell growth;0.000698896840582474!GO:0045941;positive regulation of transcription;0.000700482253547417!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000704725149765486!GO:0032508;DNA duplex unwinding;0.000735698711219819!GO:0032392;DNA geometric change;0.000735698711219819!GO:0043596;nuclear replication fork;0.000743882523029583!GO:0048518;positive regulation of biological process;0.000748559646516846!GO:0008361;regulation of cell size;0.000753591134059579!GO:0031988;membrane-bound vesicle;0.000801086361702001!GO:0016859;cis-trans isomerase activity;0.000853842153396216!GO:0016023;cytoplasmic membrane-bound vesicle;0.000874060640047355!GO:0005769;early endosome;0.000883645371918454!GO:0015631;tubulin binding;0.000883645371918454!GO:0016491;oxidoreductase activity;0.000889030638882979!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000927097741955128!GO:0006626;protein targeting to mitochondrion;0.000932197645744162!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00100005713678178!GO:0031968;organelle outer membrane;0.00106053650320333!GO:0046983;protein dimerization activity;0.00111081334032651!GO:0030029;actin filament-based process;0.00111687755401138!GO:0006401;RNA catabolic process;0.00113674053751018!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00121525578668098!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00130786816870547!GO:0006405;RNA export from nucleus;0.00133458497368307!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00135315943294607!GO:0006268;DNA unwinding during replication;0.00138495441797098!GO:0043065;positive regulation of apoptosis;0.00138495441797098!GO:0005791;rough endoplasmic reticulum;0.00139090013590138!GO:0019867;outer membrane;0.00139288525877677!GO:0006270;DNA replication initiation;0.00140769764969536!GO:0016049;cell growth;0.00150049420087184!GO:0004518;nuclease activity;0.00154550743967922!GO:0030119;AP-type membrane coat adaptor complex;0.0015800537538676!GO:0004674;protein serine/threonine kinase activity;0.00161577479745147!GO:0043681;protein import into mitochondrion;0.00162148079154728!GO:0043488;regulation of mRNA stability;0.00164466356041654!GO:0043487;regulation of RNA stability;0.00164466356041654!GO:0033116;ER-Golgi intermediate compartment membrane;0.00166879193423351!GO:0008632;apoptotic program;0.00168993505723208!GO:0005905;coated pit;0.00183909353005602!GO:0007050;cell cycle arrest;0.0018847437317812!GO:0043068;positive regulation of programmed cell death;0.00190102904615028!GO:0005637;nuclear inner membrane;0.00190809764057719!GO:0004527;exonuclease activity;0.00191685286374873!GO:0042770;DNA damage response, signal transduction;0.0019272568181649!GO:0006417;regulation of translation;0.00194543701441758!GO:0009967;positive regulation of signal transduction;0.00195653797272841!GO:0031982;vesicle;0.00197606154194948!GO:0005876;spindle microtubule;0.00203503754960345!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00206194019588307!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00206194019588307!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00206194019588307!GO:0043601;nuclear replisome;0.00214451822892052!GO:0030894;replisome;0.00214451822892052!GO:0005773;vacuole;0.00216904659674817!GO:0035258;steroid hormone receptor binding;0.00217648145194832!GO:0000922;spindle pole;0.00221600305232116!GO:0009165;nucleotide biosynthetic process;0.00221600305232116!GO:0031124;mRNA 3'-end processing;0.00231942876388523!GO:0031072;heat shock protein binding;0.00233571141168725!GO:0030131;clathrin adaptor complex;0.00240581132506484!GO:0016197;endosome transport;0.00243881778780669!GO:0006891;intra-Golgi vesicle-mediated transport;0.00246856167979355!GO:0016791;phosphoric monoester hydrolase activity;0.00254500573942303!GO:0005741;mitochondrial outer membrane;0.00260647040057098!GO:0003702;RNA polymerase II transcription factor activity;0.00260786612402792!GO:0019843;rRNA binding;0.00264455755298935!GO:0031410;cytoplasmic vesicle;0.00266220491788292!GO:0050790;regulation of catalytic activity;0.00273286270346887!GO:0048500;signal recognition particle;0.00286339481777035!GO:0048468;cell development;0.00289066697904431!GO:0030027;lamellipodium;0.00289880389675972!GO:0046474;glycerophospholipid biosynthetic process;0.00295527285211547!GO:0030132;clathrin coat of coated pit;0.00296348044586995!GO:0006091;generation of precursor metabolites and energy;0.00305190732335693!GO:0006275;regulation of DNA replication;0.00305190732335693!GO:0050662;coenzyme binding;0.00305190732335693!GO:0046489;phosphoinositide biosynthetic process;0.00317045127069747!GO:0016251;general RNA polymerase II transcription factor activity;0.003222413640497!GO:0015980;energy derivation by oxidation of organic compounds;0.00335639770948656!GO:0006414;translational elongation;0.00339939973934394!GO:0045892;negative regulation of transcription, DNA-dependent;0.00341275036193843!GO:0008139;nuclear localization sequence binding;0.00347421023588606!GO:0003711;transcription elongation regulator activity;0.00352672866889082!GO:0009112;nucleobase metabolic process;0.00354613292508315!GO:0005684;U2-dependent spliceosome;0.00356240809085314!GO:0000792;heterochromatin;0.0036184383637046!GO:0030031;cell projection biogenesis;0.00368642577665596!GO:0030521;androgen receptor signaling pathway;0.00369587692602626!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00377885906601155!GO:0006289;nucleotide-excision repair;0.00384243636638876!GO:0030658;transport vesicle membrane;0.00384243636638876!GO:0008234;cysteine-type peptidase activity;0.00392717881976768!GO:0008022;protein C-terminus binding;0.00397384870580572!GO:0007006;mitochondrial membrane organization and biogenesis;0.00409058595811429!GO:0006144;purine base metabolic process;0.0041641532685649!GO:0001726;ruffle;0.00417831390979803!GO:0016126;sterol biosynthetic process;0.0041809460527526!GO:0042393;histone binding;0.00420365422767114!GO:0030880;RNA polymerase complex;0.00421092386146144!GO:0008312;7S RNA binding;0.00440234349146546!GO:0043624;cellular protein complex disassembly;0.00451513964780432!GO:0007346;regulation of progression through mitotic cell cycle;0.00461653379025964!GO:0030663;COPI coated vesicle membrane;0.00485130113072434!GO:0030126;COPI vesicle coat;0.00485130113072434!GO:0000323;lytic vacuole;0.00500749681609928!GO:0005764;lysosome;0.00500749681609928!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00500749681609928!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00500749681609928!GO:0000819;sister chromatid segregation;0.00514058978224464!GO:0006611;protein export from nucleus;0.00518634463961424!GO:0000070;mitotic sister chromatid segregation;0.00523810876719152!GO:0000049;tRNA binding;0.00533197892363218!GO:0030137;COPI-coated vesicle;0.00534026258170809!GO:0031326;regulation of cellular biosynthetic process;0.00551742286214233!GO:0044430;cytoskeletal part;0.00557052014682712!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00558046490050554!GO:0046966;thyroid hormone receptor binding;0.00583689843991577!GO:0030176;integral to endoplasmic reticulum membrane;0.00589265367803201!GO:0048487;beta-tubulin binding;0.005976007132221!GO:0046822;regulation of nucleocytoplasmic transport;0.00605739723234242!GO:0008243;plasminogen activator activity;0.00623846240450422!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00625635520443184!GO:0045047;protein targeting to ER;0.00625635520443184!GO:0006284;base-excision repair;0.00633256411401371!GO:0006818;hydrogen transport;0.00645086261026276!GO:0030133;transport vesicle;0.00655277140923784!GO:0016272;prefoldin complex;0.00661685298691297!GO:0001889;liver development;0.0066654987314265!GO:0051540;metal cluster binding;0.00668060995555814!GO:0051536;iron-sulfur cluster binding;0.00668060995555814!GO:0000725;recombinational repair;0.00681453204737477!GO:0000724;double-strand break repair via homologous recombination;0.00681453204737477!GO:0006338;chromatin remodeling;0.00683505155442001!GO:0015992;proton transport;0.0068481788214797!GO:0008092;cytoskeletal protein binding;0.00691210221647198!GO:0051920;peroxiredoxin activity;0.00697404686354309!GO:0016044;membrane organization and biogenesis;0.00711126855955464!GO:0008047;enzyme activator activity;0.00727018002839764!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00730568412644317!GO:0000428;DNA-directed RNA polymerase complex;0.00730568412644317!GO:0030125;clathrin vesicle coat;0.00744446771990548!GO:0030665;clathrin coated vesicle membrane;0.00744446771990548!GO:0016741;transferase activity, transferring one-carbon groups;0.00750341763610779!GO:0030660;Golgi-associated vesicle membrane;0.00750341763610779!GO:0032984;macromolecular complex disassembly;0.00757485431858456!GO:0043414;biopolymer methylation;0.0079933511871204!GO:0051338;regulation of transferase activity;0.00804634228306338!GO:0000086;G2/M transition of mitotic cell cycle;0.00834376471444628!GO:0040008;regulation of growth;0.00834972074952189!GO:0046982;protein heterodimerization activity;0.00861202785675961!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0087820486207718!GO:0016311;dephosphorylation;0.0087820486207718!GO:0046483;heterocycle metabolic process;0.00887675068334133!GO:0009889;regulation of biosynthetic process;0.00892851563776617!GO:0008168;methyltransferase activity;0.00902458041628595!GO:0043241;protein complex disassembly;0.00905140003267771!GO:0008250;oligosaccharyl transferase complex;0.00907829776304029!GO:0031123;RNA 3'-end processing;0.00920062044066273!GO:0005832;chaperonin-containing T-complex;0.00923496308316797!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00923496308316797!GO:0042026;protein refolding;0.00936075523204295!GO:0032200;telomere organization and biogenesis;0.00939062029620989!GO:0000723;telomere maintenance;0.00939062029620989!GO:0006497;protein amino acid lipidation;0.009414963015202!GO:0004721;phosphoprotein phosphatase activity;0.00971265748041026!GO:0043022;ribosome binding;0.00971265748041026!GO:0031570;DNA integrity checkpoint;0.010006993908057!GO:0051087;chaperone binding;0.010006993908057!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0101135074197507!GO:0015399;primary active transmembrane transporter activity;0.0101135074197507!GO:0017166;vinculin binding;0.0105237237260364!GO:0008180;signalosome;0.0105352738313!GO:0051101;regulation of DNA binding;0.0109490079430696!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.011024835460675!GO:0006695;cholesterol biosynthetic process;0.0112940137971254!GO:0007265;Ras protein signal transduction;0.0114109685946298!GO:0006378;mRNA polyadenylation;0.011659228609855!GO:0048037;cofactor binding;0.0119917212799919!GO:0051287;NAD binding;0.012064083081548!GO:0032259;methylation;0.0123110042856478!GO:0005875;microtubule associated complex;0.0123476740689074!GO:0043549;regulation of kinase activity;0.0128103290351663!GO:0040029;regulation of gene expression, epigenetic;0.0128103290351663!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0129435978543242!GO:0046467;membrane lipid biosynthetic process;0.013067275112497!GO:0031323;regulation of cellular metabolic process;0.0131941607573807!GO:0006520;amino acid metabolic process;0.0131941607573807!GO:0008283;cell proliferation;0.0132646233164289!GO:0004003;ATP-dependent DNA helicase activity;0.0133410058621378!GO:0031529;ruffle organization and biogenesis;0.0140991647780989!GO:0016584;nucleosome positioning;0.0141445068010166!GO:0005862;muscle thin filament tropomyosin;0.0143389273401626!GO:0008408;3'-5' exonuclease activity;0.0144655445383905!GO:0008637;apoptotic mitochondrial changes;0.0146379106660943!GO:0006595;polyamine metabolic process;0.0147850213735064!GO:0000096;sulfur amino acid metabolic process;0.014848323375747!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0151400351932944!GO:0051098;regulation of binding;0.0154327775746282!GO:0065007;biological regulation;0.0154605805231614!GO:0051053;negative regulation of DNA metabolic process;0.0158408541764547!GO:0005669;transcription factor TFIID complex;0.0158431152128218!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0158431152128218!GO:0030384;phosphoinositide metabolic process;0.0158471605741477!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0158471605741477!GO:0018196;peptidyl-asparagine modification;0.0160038433868475!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0160038433868475!GO:0004576;oligosaccharyl transferase activity;0.0160696967931982!GO:0008017;microtubule binding;0.0165979868428734!GO:0050178;phenylpyruvate tautomerase activity;0.0170128011756971!GO:0003746;translation elongation factor activity;0.0178992130072455!GO:0022411;cellular component disassembly;0.0180741355018382!GO:0022890;inorganic cation transmembrane transporter activity;0.0181751770317216!GO:0019783;small conjugating protein-specific protease activity;0.0184563105563515!GO:0006892;post-Golgi vesicle-mediated transport;0.0184729066097888!GO:0043189;H4/H2A histone acetyltransferase complex;0.018555861299848!GO:0006984;ER-nuclear signaling pathway;0.0189589423474485!GO:0031625;ubiquitin protein ligase binding;0.0190705145453391!GO:0000339;RNA cap binding;0.0191906915563982!GO:0006360;transcription from RNA polymerase I promoter;0.0199020731365521!GO:0006007;glucose catabolic process;0.0199024427425382!GO:0000726;non-recombinational repair;0.0200068302333927!GO:0017134;fibroblast growth factor binding;0.0205264246052178!GO:0030032;lamellipodium biogenesis;0.0209198059980742!GO:0051128;regulation of cellular component organization and biogenesis;0.021036622862367!GO:0009303;rRNA transcription;0.021036622862367!GO:0006509;membrane protein ectodomain proteolysis;0.0214781718253796!GO:0033619;membrane protein proteolysis;0.0214781718253796!GO:0045936;negative regulation of phosphate metabolic process;0.0214781718253796!GO:0006650;glycerophospholipid metabolic process;0.0214787664072735!GO:0031577;spindle checkpoint;0.0216744001091477!GO:0006730;one-carbon compound metabolic process;0.0221913712597658!GO:0008538;proteasome activator activity;0.0227957004421078!GO:0000178;exosome (RNase complex);0.0230570574129287!GO:0050681;androgen receptor binding;0.023139335109067!GO:0030134;ER to Golgi transport vesicle;0.0232046989671942!GO:0022415;viral reproductive process;0.0232589002314236!GO:0005869;dynactin complex;0.0236269551089364!GO:0051539;4 iron, 4 sulfur cluster binding;0.0236591780603691!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0237132636967721!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.023909853117233!GO:0006506;GPI anchor biosynthetic process;0.0243798671672981!GO:0044262;cellular carbohydrate metabolic process;0.0243798671672981!GO:0003923;GPI-anchor transamidase activity;0.0244639750436552!GO:0016255;attachment of GPI anchor to protein;0.0244639750436552!GO:0042765;GPI-anchor transamidase complex;0.0244639750436552!GO:0045859;regulation of protein kinase activity;0.0245710200415067!GO:0005200;structural constituent of cytoskeleton;0.0245909558864565!GO:0004843;ubiquitin-specific protease activity;0.0250620078877852!GO:0051656;establishment of organelle localization;0.02518908979086!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0253279069546768!GO:0015002;heme-copper terminal oxidase activity;0.0253279069546768!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0253279069546768!GO:0004129;cytochrome-c oxidase activity;0.0253279069546768!GO:0035267;NuA4 histone acetyltransferase complex;0.0254534387110399!GO:0000209;protein polyubiquitination;0.0254621086077059!GO:0000781;chromosome, telomeric region;0.0257335744872019!GO:0046112;nucleobase biosynthetic process;0.0257702807750203!GO:0006354;RNA elongation;0.0258729365127664!GO:0008629;induction of apoptosis by intracellular signals;0.0258729365127664!GO:0006376;mRNA splice site selection;0.0275907199250716!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0275907199250716!GO:0047485;protein N-terminus binding;0.0281555896962216!GO:0006740;NADPH regeneration;0.0282406156230246!GO:0006098;pentose-phosphate shunt;0.0282406156230246!GO:0032507;maintenance of cellular protein localization;0.0283575622054542!GO:0045792;negative regulation of cell size;0.0283732647088311!GO:0045045;secretory pathway;0.0284413100815977!GO:0009124;nucleoside monophosphate biosynthetic process;0.0285393331474561!GO:0009123;nucleoside monophosphate metabolic process;0.0285393331474561!GO:0042158;lipoprotein biosynthetic process;0.0286866526002913!GO:0022406;membrane docking;0.0288001300627964!GO:0048278;vesicle docking;0.0288001300627964!GO:0005663;DNA replication factor C complex;0.0288197610147612!GO:0009116;nucleoside metabolic process;0.0290649281376941!GO:0003887;DNA-directed DNA polymerase activity;0.029637696514682!GO:0007021;tubulin folding;0.0297034993116855!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0297096949868325!GO:0030518;steroid hormone receptor signaling pathway;0.0302113690424821!GO:0008426;protein kinase C inhibitor activity;0.0302956216450049!GO:0016790;thiolester hydrolase activity;0.0318832985303832!GO:0044450;microtubule organizing center part;0.0319822092893777!GO:0030433;ER-associated protein catabolic process;0.0319822092893777!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0319822092893777!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0319822092893777!GO:0006505;GPI anchor metabolic process;0.032735236454303!GO:0000118;histone deacetylase complex;0.0333854656526696!GO:0030308;negative regulation of cell growth;0.035071036824257!GO:0030100;regulation of endocytosis;0.0351448980491195!GO:0016301;kinase activity;0.0354753239467412!GO:0008601;protein phosphatase type 2A regulator activity;0.035722684207692!GO:0007004;telomere maintenance via telomerase;0.035799773464346!GO:0008156;negative regulation of DNA replication;0.0369153069234959!GO:0000152;nuclear ubiquitin ligase complex;0.0372890581881234!GO:0000077;DNA damage checkpoint;0.0372954332882881!GO:0004221;ubiquitin thiolesterase activity;0.0373859380558858!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0376030242236698!GO:0043284;biopolymer biosynthetic process;0.0377048692461661!GO:0007242;intracellular signaling cascade;0.037790854949349!GO:0005083;small GTPase regulator activity;0.037790854949349!GO:0006470;protein amino acid dephosphorylation;0.0381250864985012!GO:0043130;ubiquitin binding;0.0382177967116836!GO:0032182;small conjugating protein binding;0.0382177967116836!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0382177967116836!GO:0001952;regulation of cell-matrix adhesion;0.0382375974390715!GO:0008536;Ran GTPase binding;0.0391127844972101!GO:0009893;positive regulation of metabolic process;0.039656560123977!GO:0003893;epsilon DNA polymerase activity;0.0396809048126701!GO:0004185;serine carboxypeptidase activity;0.0402646020620488!GO:0006672;ceramide metabolic process;0.0404959244275485!GO:0006368;RNA elongation from RNA polymerase II promoter;0.040718078734626!GO:0005658;alpha DNA polymerase:primase complex;0.0408064226456311!GO:0030127;COPII vesicle coat;0.0412363932854422!GO:0012507;ER to Golgi transport vesicle membrane;0.0412363932854422!GO:0042326;negative regulation of phosphorylation;0.0412363932854422!GO:0046519;sphingoid metabolic process;0.0412363932854422!GO:0033673;negative regulation of kinase activity;0.0417046771247991!GO:0006469;negative regulation of protein kinase activity;0.0417046771247991!GO:0000123;histone acetyltransferase complex;0.0419275835051793!GO:0008097;5S rRNA binding;0.0423081502921941!GO:0051059;NF-kappaB binding;0.0423103550312174!GO:0035035;histone acetyltransferase binding;0.0423103550312174!GO:0030659;cytoplasmic vesicle membrane;0.0427269640909932!GO:0043631;RNA polyadenylation;0.0439762984921229!GO:0016408;C-acyltransferase activity;0.044066967070643!GO:0031901;early endosome membrane;0.0446378948463948!GO:0005784;translocon complex;0.0448469116446129!GO:0045334;clathrin-coated endocytic vesicle;0.0451939782117486!GO:0043492;ATPase activity, coupled to movement of substances;0.04521553480047!GO:0004532;exoribonuclease activity;0.0452205858784381!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0452205858784381!GO:0016407;acetyltransferase activity;0.0454011030091767!GO:0000790;nuclear chromatin;0.0454773183970208!GO:0031628;opioid receptor binding;0.0454773183970208!GO:0031852;mu-type opioid receptor binding;0.0454773183970208!GO:0000910;cytokinesis;0.04641554804489!GO:0005096;GTPase activator activity;0.0465575842390036!GO:0046365;monosaccharide catabolic process;0.0468453464268932!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0469102086189459!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0469102086189459!GO:0033239;negative regulation of amine metabolic process;0.0472782202653922!GO:0045763;negative regulation of amino acid metabolic process;0.0472782202653922!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0472782202653922!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0474254876470629!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0479711026922041!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0479711026922041!GO:0051716;cellular response to stimulus;0.0479711026922041!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0482154355430186!GO:0003756;protein disulfide isomerase activity;0.0483348818111387!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0483348818111387!GO:0006904;vesicle docking during exocytosis;0.0483348818111387!GO:0006350;transcription;0.0485739672771255!GO:0008610;lipid biosynthetic process;0.0486897289820897!GO:0022408;negative regulation of cell-cell adhesion;0.0493595478894517!GO:0031575;G1/S transition checkpoint;0.0494535771026583!GO:0009161;ribonucleoside monophosphate metabolic process;0.0498149562376942!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0498149562376942!GO:0001832;blastocyst growth;0.0498293017842423
|sample_id=10431
|sample_id=10431
|sample_note=machine failed, remainder reloaded, low amount
|sample_note=machine failed, remainder reloaded, low amount
Line 76: Line 100:
|sample_tissue=cervix
|sample_tissue=cervix
|top_motifs=E2F1..5:1.84768068559;TFDP1:1.82708907055;NFY{A,B,C}:1.37741160004;SNAI1..3:1.36503976631;TP53:1.34648333577;HSF1,2:1.31270290492;TBX4,5:1.30446032936;ZEB1:1.30375549253;bHLH_family:1.30211019998;XCPE1{core}:1.27789209776;VSX1,2:1.14686630357;ADNP_IRX_SIX_ZHX:1.07508613363;POU1F1:1.02849235381;TEAD1:0.959774536881;MYOD1:0.948942277984;ARID5B:0.945142489245;HIF1A:0.926845505494;NANOG:0.871904925384;ELK1,4_GABP{A,B1}:0.857661871656;NRF1:0.857358460201;MYB:0.848571071874;POU2F1..3:0.833253077702;CDC5L:0.830243071662;SOX{8,9,10}:0.823675234764;SP1:0.815263904206;EN1,2:0.75502515584;FOS_FOS{B,L1}_JUN{B,D}:0.720950003176;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.695670458285;TEF:0.655236813321;PITX1..3:0.654974592115;FOXM1:0.654785261001;HOX{A5,B5}:0.642401974407;NKX2-1,4:0.636052450333;IKZF1:0.613555625314;ZNF143:0.55737327103;BACH2:0.519711115113;PPARG:0.481609748334;ZFP161:0.429671382908;FOXP1:0.428013849309;GFI1B:0.39749787692;NFE2:0.39705101075;FOXQ1:0.388483596127;STAT5{A,B}:0.366463176467;ONECUT1,2:0.362143477353;RBPJ:0.342682864071;FOSL2:0.340251114948;OCT4_SOX2{dimer}:0.327099829166;IRF7:0.324446526673;LEF1_TCF7_TCF7L1,2:0.295946161134;FOXA2:0.290464114808;NKX6-1,2:0.269628100723;EP300:0.263714137418;GFI1:0.262384915038;NKX3-2:0.230918514902;BREu{core}:0.228044524678;TBP:0.213086114885;FOXN1:0.189106971994;PAX6:0.160364174143;NR5A1,2:0.159166249611;CRX:0.153174390576;ATF5_CREB3:0.137830706318;AHR_ARNT_ARNT2:0.137793219881;PAX1,9:0.132389329196;NKX2-3_NKX2-5:0.129213402753;FOXL1:0.115656526022;PAX2:0.109839809078;PAX8:0.106070710948;FOX{I1,J2}:0.0973710738887;PAX3,7:0.0849898574155;NFKB1_REL_RELA:0.0805933106461;NKX2-2,8:0.0775540846977;PRRX1,2:0.0575709211865;TFAP2B:0.0489362373188;LHX3,4:0.037778704859;SOX2:0.0320458328168;T:0.0280247107914;RFX2..5_RFXANK_RFXAP:0.016101428955;ZNF148:0.0156244006002;CREB1:0.0152891317905;MTE{core}:0.0150758908432;HOX{A4,D4}:-0.00167994613706;SOX17:-0.00735408416461;ATF4:-0.0275355936751;HES1:-0.0443581354818;HNF1A:-0.0525725225028;ELF1,2,4:-0.053880621502;PDX1:-0.0650177104011;NR3C1:-0.0724802231107;STAT1,3:-0.0830741819064;TFAP2{A,C}:-0.102358014289;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.109943812666;POU5F1:-0.117737339179;HLF:-0.131421292438;YY1:-0.132063703995;STAT2,4,6:-0.13683282623;LMO2:-0.146969096425;HBP1_HMGB_SSRP1_UBTF:-0.160989549631;NFIL3:-0.164073810017;NFE2L2:-0.165304887619;GCM1,2:-0.194173282878;TOPORS:-0.194795547795;HIC1:-0.204492380921;MTF1:-0.206596613352;MAZ:-0.21726548505;POU3F1..4:-0.227700959011;CEBPA,B_DDIT3:-0.22892666944;MEF2{A,B,C,D}:-0.232338926286;GATA6:-0.23284524827;GLI1..3:-0.236791012522;FOXO1,3,4:-0.237661959169;GTF2A1,2:-0.254426078624;NFIX:-0.26461287404;TFCP2:-0.281453313436;ZBTB16:-0.292749024034;TLX1..3_NFIC{dimer}:-0.306488781624;MED-1{core}:-0.306902227404;RFX1:-0.306955936632;SRF:-0.318132849451;MYBL2:-0.318552728695;ETS1,2:-0.323842997349;NR1H4:-0.329536858283;NFE2L1:-0.329869948786;RUNX1..3:-0.347256155066;POU6F1:-0.384601071581;HOXA9_MEIS1:-0.384891798821;ZBTB6:-0.391129241789;GTF2I:-0.392345291587;RORA:-0.405499392924;AR:-0.415490433365;EGR1..3:-0.42650957289;SPIB:-0.431633729344;HNF4A_NR2F1,2:-0.444442008423;JUN:-0.449198346386;DMAP1_NCOR{1,2}_SMARC:-0.458356537918;PRDM1:-0.474588495514;HMGA1,2:-0.474737809842;PAX5:-0.477470964904;ZNF384:-0.488569710426;IRF1,2:-0.493417619904;AIRE:-0.513377098101;ATF2:-0.514298645745;ZNF238:-0.514713100406;REST:-0.514945864645;PBX1:-0.521278931838;PAX4:-0.524270789735;FOX{D1,D2}:-0.536803428854;NR6A1:-0.550733180927;CUX2:-0.556679745763;CDX1,2,4:-0.563500982396;UFEwm:-0.588183827132;SPI1:-0.613926333572;FOX{F1,F2,J1}:-0.619872459609;GZF1:-0.631765677467;DBP:-0.642499272252;PATZ1:-0.655578192312;EBF1:-0.658655006638;SREBF1,2:-0.661607951752;TAL1_TCF{3,4,12}:-0.67269430284;ZIC1..3:-0.694124655253;XBP1:-0.700564985682;HOX{A6,A7,B6,B7}:-0.721592710679;NKX3-1:-0.72198069057;HAND1,2:-0.730569182021;MZF1:-0.735100792539;GATA4:-0.771646508208;IKZF2:-0.776359942948;KLF4:-0.77688341786;NFATC1..3:-0.801653294335;RXR{A,B,G}:-0.829844269953;RREB1:-0.845513122451;MAFB:-0.849636214616;TFAP4:-0.853508359066;EVI1:-0.876579081308;FOXP3:-0.878973598241;BPTF:-0.915332775335;NHLH1,2:-0.940857013563;RXRA_VDR{dimer}:-0.970408166797;MYFfamily:-0.981063576083;FOXD3:-1.00034188766;SOX5:-1.07490165832;ESRRA:-1.10786551828;NANOG{mouse}:-1.22583588747;ZNF423:-1.27393134683;ALX1:-1.28801111332;HMX1:-1.29690758019;SPZ1:-1.32689576343;TGIF1:-1.32977471711;ALX4:-1.332892257;ESR1:-1.42638951717;TLX2:-1.49609458329;ATF6:-1.53455952535;SMAD1..7,9:-1.66353351453
|top_motifs=E2F1..5:1.84768068559;TFDP1:1.82708907055;NFY{A,B,C}:1.37741160004;SNAI1..3:1.36503976631;TP53:1.34648333577;HSF1,2:1.31270290492;TBX4,5:1.30446032936;ZEB1:1.30375549253;bHLH_family:1.30211019998;XCPE1{core}:1.27789209776;VSX1,2:1.14686630357;ADNP_IRX_SIX_ZHX:1.07508613363;POU1F1:1.02849235381;TEAD1:0.959774536881;MYOD1:0.948942277984;ARID5B:0.945142489245;HIF1A:0.926845505494;NANOG:0.871904925384;ELK1,4_GABP{A,B1}:0.857661871656;NRF1:0.857358460201;MYB:0.848571071874;POU2F1..3:0.833253077702;CDC5L:0.830243071662;SOX{8,9,10}:0.823675234764;SP1:0.815263904206;EN1,2:0.75502515584;FOS_FOS{B,L1}_JUN{B,D}:0.720950003176;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.695670458285;TEF:0.655236813321;PITX1..3:0.654974592115;FOXM1:0.654785261001;HOX{A5,B5}:0.642401974407;NKX2-1,4:0.636052450333;IKZF1:0.613555625314;ZNF143:0.55737327103;BACH2:0.519711115113;PPARG:0.481609748334;ZFP161:0.429671382908;FOXP1:0.428013849309;GFI1B:0.39749787692;NFE2:0.39705101075;FOXQ1:0.388483596127;STAT5{A,B}:0.366463176467;ONECUT1,2:0.362143477353;RBPJ:0.342682864071;FOSL2:0.340251114948;OCT4_SOX2{dimer}:0.327099829166;IRF7:0.324446526673;LEF1_TCF7_TCF7L1,2:0.295946161134;FOXA2:0.290464114808;NKX6-1,2:0.269628100723;EP300:0.263714137418;GFI1:0.262384915038;NKX3-2:0.230918514902;BREu{core}:0.228044524678;TBP:0.213086114885;FOXN1:0.189106971994;PAX6:0.160364174143;NR5A1,2:0.159166249611;CRX:0.153174390576;ATF5_CREB3:0.137830706318;AHR_ARNT_ARNT2:0.137793219881;PAX1,9:0.132389329196;NKX2-3_NKX2-5:0.129213402753;FOXL1:0.115656526022;PAX2:0.109839809078;PAX8:0.106070710948;FOX{I1,J2}:0.0973710738887;PAX3,7:0.0849898574155;NFKB1_REL_RELA:0.0805933106461;NKX2-2,8:0.0775540846977;PRRX1,2:0.0575709211865;TFAP2B:0.0489362373188;LHX3,4:0.037778704859;SOX2:0.0320458328168;T:0.0280247107914;RFX2..5_RFXANK_RFXAP:0.016101428955;ZNF148:0.0156244006002;CREB1:0.0152891317905;MTE{core}:0.0150758908432;HOX{A4,D4}:-0.00167994613706;SOX17:-0.00735408416461;ATF4:-0.0275355936751;HES1:-0.0443581354818;HNF1A:-0.0525725225028;ELF1,2,4:-0.053880621502;PDX1:-0.0650177104011;NR3C1:-0.0724802231107;STAT1,3:-0.0830741819064;TFAP2{A,C}:-0.102358014289;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.109943812666;POU5F1:-0.117737339179;HLF:-0.131421292438;YY1:-0.132063703995;STAT2,4,6:-0.13683282623;LMO2:-0.146969096425;HBP1_HMGB_SSRP1_UBTF:-0.160989549631;NFIL3:-0.164073810017;NFE2L2:-0.165304887619;GCM1,2:-0.194173282878;TOPORS:-0.194795547795;HIC1:-0.204492380921;MTF1:-0.206596613352;MAZ:-0.21726548505;POU3F1..4:-0.227700959011;CEBPA,B_DDIT3:-0.22892666944;MEF2{A,B,C,D}:-0.232338926286;GATA6:-0.23284524827;GLI1..3:-0.236791012522;FOXO1,3,4:-0.237661959169;GTF2A1,2:-0.254426078624;NFIX:-0.26461287404;TFCP2:-0.281453313436;ZBTB16:-0.292749024034;TLX1..3_NFIC{dimer}:-0.306488781624;MED-1{core}:-0.306902227404;RFX1:-0.306955936632;SRF:-0.318132849451;MYBL2:-0.318552728695;ETS1,2:-0.323842997349;NR1H4:-0.329536858283;NFE2L1:-0.329869948786;RUNX1..3:-0.347256155066;POU6F1:-0.384601071581;HOXA9_MEIS1:-0.384891798821;ZBTB6:-0.391129241789;GTF2I:-0.392345291587;RORA:-0.405499392924;AR:-0.415490433365;EGR1..3:-0.42650957289;SPIB:-0.431633729344;HNF4A_NR2F1,2:-0.444442008423;JUN:-0.449198346386;DMAP1_NCOR{1,2}_SMARC:-0.458356537918;PRDM1:-0.474588495514;HMGA1,2:-0.474737809842;PAX5:-0.477470964904;ZNF384:-0.488569710426;IRF1,2:-0.493417619904;AIRE:-0.513377098101;ATF2:-0.514298645745;ZNF238:-0.514713100406;REST:-0.514945864645;PBX1:-0.521278931838;PAX4:-0.524270789735;FOX{D1,D2}:-0.536803428854;NR6A1:-0.550733180927;CUX2:-0.556679745763;CDX1,2,4:-0.563500982396;UFEwm:-0.588183827132;SPI1:-0.613926333572;FOX{F1,F2,J1}:-0.619872459609;GZF1:-0.631765677467;DBP:-0.642499272252;PATZ1:-0.655578192312;EBF1:-0.658655006638;SREBF1,2:-0.661607951752;TAL1_TCF{3,4,12}:-0.67269430284;ZIC1..3:-0.694124655253;XBP1:-0.700564985682;HOX{A6,A7,B6,B7}:-0.721592710679;NKX3-1:-0.72198069057;HAND1,2:-0.730569182021;MZF1:-0.735100792539;GATA4:-0.771646508208;IKZF2:-0.776359942948;KLF4:-0.77688341786;NFATC1..3:-0.801653294335;RXR{A,B,G}:-0.829844269953;RREB1:-0.845513122451;MAFB:-0.849636214616;TFAP4:-0.853508359066;EVI1:-0.876579081308;FOXP3:-0.878973598241;BPTF:-0.915332775335;NHLH1,2:-0.940857013563;RXRA_VDR{dimer}:-0.970408166797;MYFfamily:-0.981063576083;FOXD3:-1.00034188766;SOX5:-1.07490165832;ESRRA:-1.10786551828;NANOG{mouse}:-1.22583588747;ZNF423:-1.27393134683;ALX1:-1.28801111332;HMX1:-1.29690758019;SPZ1:-1.32689576343;TGIF1:-1.32977471711;ALX4:-1.332892257;ESR1:-1.42638951717;TLX2:-1.49609458329;ATF6:-1.53455952535;SMAD1..7,9:-1.66353351453
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10431-106D8;search_select_hide=table117:FF:10431-106D8
}}
}}

Latest revision as of 14:01, 3 June 2020

Name:epidermoid carcinoma cell line:Ca Ski
Species:Human (Homo sapiens)
Library ID:CNhs10748
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecervix
dev stage40 year old adult
sexfemale
age40
cell typeunclassifiable
cell lineCa Ski
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005497
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10748 CAGE DRX007880 DRR008752
Accession ID Hg19

Library idBAMCTSS
CNhs10748 DRZ000177 DRZ001562
Accession ID Hg38

Library idBAMCTSS
CNhs10748 DRZ011527 DRZ012912
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10056downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.038
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
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C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10748

Jaspar motifP-value
MA0002.20.0168
MA0003.10.0904
MA0004.10.267
MA0006.10.944
MA0007.10.318
MA0009.10.353
MA0014.10.0384
MA0017.10.0738
MA0018.20.102
MA0019.10.73
MA0024.11.29996e-5
MA0025.10.597
MA0027.10.656
MA0028.10.0243
MA0029.10.15
MA0030.10.831
MA0031.10.913
MA0035.20.0898
MA0038.16.84961e-4
MA0039.20.00177
MA0040.10.0484
MA0041.10.291
MA0042.10.111
MA0043.10.162
MA0046.10.674
MA0047.20.483
MA0048.10.128
MA0050.10.695
MA0051.10.828
MA0052.10.917
MA0055.13.93476e-4
MA0057.10.598
MA0058.10.45
MA0059.10.382
MA0060.14.85558e-13
MA0061.10.111
MA0062.20.0122
MA0065.20.35
MA0066.10.197
MA0067.10.887
MA0068.10.23
MA0069.10.681
MA0070.10.453
MA0071.10.21
MA0072.10.908
MA0073.10.764
MA0074.10.422
MA0076.10.041
MA0077.10.221
MA0078.10.622
MA0079.20.605
MA0080.20.0106
MA0081.10.657
MA0083.10.96
MA0084.10.386
MA0087.10.253
MA0088.10.911
MA0090.10.00225
MA0091.10.00425
MA0092.10.213
MA0093.10.279
MA0099.25.95473e-14
MA0100.10.41
MA0101.10.893
MA0102.20.91
MA0103.10.00298
MA0104.20.0164
MA0105.17.68307e-4
MA0106.18.08062e-4
MA0107.10.742
MA0108.20.0297
MA0111.10.821
MA0112.20.00101
MA0113.10.0336
MA0114.10.536
MA0115.10.688
MA0116.10.00701
MA0117.10.881
MA0119.10.458
MA0122.10.842
MA0124.10.173
MA0125.10.0902
MA0131.10.271
MA0135.10.586
MA0136.10.767
MA0137.20.934
MA0138.20.00139
MA0139.10.584
MA0140.10.155
MA0141.10.0808
MA0142.10.792
MA0143.10.37
MA0144.10.984
MA0145.10.176
MA0146.10.559
MA0147.10.0294
MA0148.10.633
MA0149.10.17
MA0150.10.171
MA0152.10.282
MA0153.10.81
MA0154.10.0408
MA0155.10.121
MA0156.10.224
MA0157.10.729
MA0159.10.818
MA0160.10.7
MA0162.10.686
MA0163.10.0162
MA0164.10.849
MA0258.10.00385
MA0259.10.0713



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10748

Novel motifP-value
10.233
100.615
1000.383
1010.0888
1020.458
1030.402
1040.867
1050.701
1060.0233
1070.411
1080.99
1090.367
110.0974
1100.922
1110.831
1120.058
1130.257
1140.0771
1150.0669
1160.135
1170.884
1180.534
1190.123
120.802
1200.997
1210.516
1220.256
1230.355
1240.0417
1250.0852
1260.777
1270.802
1284.90598e-4
1290.892
130.181
1300.0521
1310.27
1320.74
1330.317
1340.06
1350.00931
1360.0336
1370.0966
1380.867
1390.0296
140.428
1400.554
1410.808
1420.633
1430.151
1440.0369
1450.588
1460.689
1470.683
1480.264
1490.0302
150.479
1500.959
1510.446
1520.475
1530.996
1540.654
1550.681
1560.47
1570.716
1580.482
1590.921
160.569
1600.5
1610.225
1620.758
1630.654
1640.806
1650.497
1660.296
1670.701
1680.666
1690.128
170.774
180.126
190.0247
20.62
200.104
210.634
220.181
230.172
240.267
250.953
260.68
270.081
280.636
290.577
30.23
300.753
310.0825
320.00985
330.196
340.168
350.02
360.676
370.24
380.703
390.852
40.722
400.166
410.382
420.604
430.0912
440.0978
450.736
460.113
470.413
480.54
490.15
50.0677
500.351
510.325
520.529
530.503
540.208
550.131
560.599
570.869
580.62
590.0949
60.408
600.281
610.548
620.241
630.795
640.661
650.042
660.00264
670.586
680.174
690.594
70.711
700.0169
710.456
720.276
730.488
740.0853
750.734
760.815
770.263
780.156
790.00215
80.165
800.298
810.0526
821.2444e-4
830.688
840.741
850.00118
860.405
870.117
880.908
890.116
90.147
900.103
910.0745
920.0428
930.413
940.123
950.113
960.0458
970.756
980.142
990.895



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10748


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002535 (epithelial cell of cervix)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
1749 (squamous cell carcinoma)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0000483 (epithelium)
0003134 (female reproductive organ)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0006955 (uterine epithelium)
0004801 (cervix epithelium)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101967 (cervical cancer cell line sample)
0103109 (CaSki cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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