FF:10154-103A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005223 | ||
|accession_numbers=CAGE;DRX008742;DRR009614;DRZ001039;DRZ002424 | |HumanCAGEScanFiles=NCig10026;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008742;DRR009614;DRZ001039;DRZ002424;DRZ012389;DRZ013774 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.75!556.68!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.55!355.81!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.53!339.26!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.32!420.46!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.19!154.84!ST18;;chr2:145277882..145277967,-!p3@ZEB2!1.99!161.56!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!1.99!97.64!SOX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.97!93.19!NKX6-2;;chr16:1031762..1031781,+!p1@SOX8!1.96!90.30!SOX8;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.96!89.37!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.93!83.99!OLIG2;;chr8:53322347..53322378,-!p2@ST18!1.90!77.78!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.89!101.47!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.82!65.47!POU3F3;;chr12:26277956..26277980,-!p1@BHLHE41!1.79!210.38!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.37!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.68!59.99!ZNF488;;chr12:106976678..106976708,+!p2@RFX4!1.64!42.92!RFX4;;chr19:46801639..46801699,+!p1@HIF3A!1.63!41.79!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.78!ZBTB16;;chr9:114287433..114287513,+!p1@ZNF483!1.58!92.99!ZNF483;;chr3:126076242..126076257,-!p1@KLF15!1.58!45.92!KLF15;;chr16:85932760..85932775,+!p1@IRF8!1.54!34.03!IRF8;;chr1:214161272..214161322,+!p1@PROX1!1.53!46.13!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.53!33.10!ZNF385A;;chr11:47400078..47400106,-!p1@SPI1!1.51!31.34!SPI1;;chr2:95963052..95963106,+!p1@KCNIP3!1.47!28.34!KCNIP3;;chr15:80696703..80696754,+!p1@ARNT2!1.46!36.72!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.45!35.79!PRDM8;;chr19:13135386..13135435,+!p4@NFIX!1.45!27.10!NFIX;;chr9:77112244..77112262,+!p1@RORB!1.44!29.37!RORB;;chr3:181429741..181429767,+!p2@SOX2!1.42!25.13!SOX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.40!24.00!POU3F3;;chr15:80735246..80735321,+!p3@ARNT2!1.39!23.58!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.38!23.17!PAX6;;chr19:30863271..30863338,+!p1@ZNF536!1.38!22.86!ZNF536;;chr17:53342311..53342400,+!p1@HLF!1.36!25.34!HLF;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.31!ZNF727;;chr12:106976774..106976788,+!p1@RFX4!1.33!20.48!RFX4;;chr6:19837592..19837621,+!p1@ID4!1.32!119.78!ID4;;chr1:61548069..61548102,+!p3@NFIA!1.32!47.58!NFIA;;chr10:64134120..64134183,+!p1@ZNF365!1.32!24.10!ZNF365;;chr14:33408072..33408114,+!p2@NPAS3!1.31!22.76!NPAS3;;chr19:46800289..46800327,+!p2@HIF3A!1.31!19.34!HIF3A;;chr14:29235961..29236008,+!p1@FOXG1!1.30!19.03!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.93!NPAS3;;chr14:29234581..29234601,+!p2@FOXG1!1.30!18.82!FOXG1;;chr22:41763452..41763466,+!p2@TEF!1.29!18.31!TEF;;chr2:214016314..214016343,-!p2@IKZF2!1.26!28.96!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.26!24.41!BHLHE41;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.07!SALL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.96!ZBED1;;chr2:95963120..95963136,+!p2@KCNIP3!1.25!16.76!KCNIP3;;chr17:38219209..38219230,+!p1@THRA!1.24!209.14!THRA;;chr2:166326200..166326216,+!p1@CSRNP3!1.24!23.89!CSRNP3;;chr3:114819124..114819200,-!p3@ZBTB20!1.23!36.51!ZBTB20;;chr16:51185318..51185348,-!p2@SALL1!1.21!15.20!SALL1;;chr2:178128250..178128293,-!p6@NFE2L2!1.20!37.24!NFE2L2;;chr3:126076264..126076305,-!p2@KLF15!1.20!20.58!KLF15;;chr10:119302232..119302265,+!p1@EMX2!1.20!14.79!EMX2;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.79!TFEC;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.51!SOX15;;chr4:26344778..26344807,+!p8@RBPJ!1.19!14.58!RBPJ;;chr19:21512115..21512135,-!p3@ZNF708!1.18!28.75!ZNF708;;chr13:72441315..72441454,-!p1@DACH1!1.18!28.44!DACH1;;chr8:40755333..40755352,-!p1@ZMAT4!1.18!14.17!ZMAT4;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.07!ASCL1;;chr19:21512144..21512191,-!p2@ZNF708!1.16!62.58!ZNF708;;chr16:79634624..79634642,-!p1@MAF!1.16!53.06!MAF;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.13!DPF3;;chr11:113930401..113930422,+!p3@ZBTB16!1.16!13.34!ZBTB16;;chrX:82763292..82763317,+!p1@POU3F4!1.16!13.34!POU3F4;;chr17:70117153..70117174,+!p1@SOX9!1.15!135.19!SOX9;;chr7:28725740..28725778,+!p1@CREB5!1.15!115.95!CREB5;;chr11:113930291..113930339,+!p2@ZBTB16!1.15!21.41!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.15!13.24!NPAS3;;chr8:53322411..53322422,-!p6@ST18!1.14!12.93!ST18;;chr4:26344754..26344772,+!p10@RBPJ!1.14!12.83!RBPJ;;chr1:40105299..40105326,-!p1@HEYL!1.13!12.62!HEYL;;chr2:145275982..145276003,-!p7@ZEB2!1.13!12.52!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.12!98.88!ZNF652;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.12!12.31!SMARCE1;;chr15:57511609..57511651,+!p2@TCF12!1.11!20.07!TCF12;;chr6:126112074..126112144,+!p1@NCOA7!1.09!149.98!NCOA7;;chr19:38085768..38085821,+!p1@ZNF540!1.09!16.96!ZNF540;;chr16:67198633..67198671,+!p1@HSF4!1.09!11.38!HSF4;;chrX:25034067..25034088,-!p1@ARX!1.09!11.38!ARX;;chr20:21494654..21494678,-!p2@NKX2-2!1.09!11.17!NKX2-2;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.96!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.08!10.96!ZNF323;;chr19:57019215..570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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.75!556.68!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.55!355.81!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.53!339.26!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.32!420.46!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.19!154.84!ST18;;chr2:145277882..145277967,-!p3@ZEB2!1.99!161.56!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!1.99!97.64!SOX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.97!93.19!NKX6-2;;chr16:1031762..1031781,+!p1@SOX8!1.96!90.30!SOX8;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.96!89.37!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.93!83.99!OLIG2;;chr8:53322347..53322378,-!p2@ST18!1.90!77.78!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.89!101.47!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.82!65.47!POU3F3;;chr12:26277956..26277980,-!p1@BHLHE41!1.79!210.38!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.37!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.68!59.99!ZNF488;;chr12:106976678..106976708,+!p2@RFX4!1.64!42.92!RFX4;;chr19:46801639..46801699,+!p1@HIF3A!1.63!41.79!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.78!ZBTB16;;chr9:114287433..114287513,+!p1@ZNF483!1.58!92.99!ZNF483;;chr3:126076242..126076257,-!p1@KLF15!1.58!45.92!KLF15;;chr16:85932760..85932775,+!p1@IRF8!1.54!34.03!IRF8;;chr1:214161272..214161322,+!p1@PROX1!1.53!46.13!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.53!33.10!ZNF385A;;chr11:47400078..47400106,-!p1@SPI1!1.51!31.34!SPI1;;chr2:95963052..95963106,+!p1@KCNIP3!1.47!28.34!KCNIP3;;chr15:80696703..80696754,+!p1@ARNT2!1.46!36.72!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.45!35.79!PRDM8;;chr19:13135386..13135435,+!p4@NFIX!1.45!27.10!NFIX;;chr9:77112244..77112262,+!p1@RORB!1.44!29.37!RORB;;chr3:181429741..181429767,+!p2@SOX2!1.42!25.13!SOX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.40!24.00!POU3F3;;chr15:80735246..80735321,+!p3@ARNT2!1.39!23.58!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.38!23.17!PAX6;;chr19:30863271..30863338,+!p1@ZNF536!1.38!22.86!ZNF536;;chr17:53342311..53342400,+!p1@HLF!1.36!25.34!HLF;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.31!ZNF727;;chr12:106976774..106976788,+!p1@RFX4!1.33!20.48!RFX4;;chr6:19837592..19837621,+!p1@ID4!1.32!119.78!ID4;;chr1:61548069..61548102,+!p3@NFIA!1.32!47.58!NFIA;;chr10:64134120..64134183,+!p1@ZNF365!1.32!24.10!ZNF365;;chr14:33408072..33408114,+!p2@NPAS3!1.31!22.76!NPAS3;;chr19:46800289..46800327,+!p2@HIF3A!1.31!19.34!HIF3A;;chr14:29235961..29236008,+!p1@FOXG1!1.30!19.03!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.93!NPAS3;;chr14:29234581..29234601,+!p2@FOXG1!1.30!18.82!FOXG1;;chr22:41763452..41763466,+!p2@TEF!1.29!18.31!TEF;;chr2:214016314..214016343,-!p2@IKZF2!1.26!28.96!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.26!24.41!BHLHE41;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.07!SALL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.96!ZBED1;;chr2:95963120..95963136,+!p2@KCNIP3!1.25!16.76!KCNIP3;;chr17:38219209..38219230,+!p1@THRA!1.24!209.14!THRA;;chr2:166326200..166326216,+!p1@CSRNP3!1.24!23.89!CSRNP3;;chr3:114819124..114819200,-!p3@ZBTB20!1.23!36.51!ZBTB20;;chr16:51185318..51185348,-!p2@SALL1!1.21!15.20!SALL1;;chr2:178128250..178128293,-!p6@NFE2L2!1.20!37.24!NFE2L2;;chr3:126076264..126076305,-!p2@KLF15!1.20!20.58!KLF15;;chr10:119302232..119302265,+!p1@EMX2!1.20!14.79!EMX2;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.79!TFEC;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.51!SOX15;;chr4:26344778..26344807,+!p8@RBPJ!1.19!14.58!RBPJ;;chr19:21512115..21512135,-!p3@ZNF708!1.18!28.75!ZNF708;;chr13:72441315..72441454,-!p1@DACH1!1.18!28.44!DACH1;;chr8:40755333..40755352,-!p1@ZMAT4!1.18!14.17!ZMAT4;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.07!ASCL1;;chr19:21512144..21512191,-!p2@ZNF708!1.16!62.58!ZNF708;;chr16:79634624..79634642,-!p1@MAF!1.16!53.06!MAF;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.13!DPF3;;chr11:113930401..113930422,+!p3@ZBTB16!1.16!13.34!ZBTB16;;chrX:82763292..82763317,+!p1@POU3F4!1.16!13.34!POU3F4;;chr17:70117153..70117174,+!p1@SOX9!1.15!135.19!SOX9;;chr7:28725740..28725778,+!p1@CREB5!1.15!115.95!CREB5;;chr11:113930291..113930339,+!p2@ZBTB16!1.15!21.41!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.15!13.24!NPAS3;;chr8:53322411..53322422,-!p6@ST18!1.14!12.93!ST18;;chr4:26344754..26344772,+!p10@RBPJ!1.14!12.83!RBPJ;;chr1:40105299..40105326,-!p1@HEYL!1.13!12.62!HEYL;;chr2:145275982..145276003,-!p7@ZEB2!1.13!12.52!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.12!98.88!ZNF652;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.12!12.31!SMARCE1;;chr15:57511609..57511651,+!p2@TCF12!1.11!20.07!TCF12;;chr6:126112074..126112144,+!p1@NCOA7!1.09!149.98!NCOA7;;chr19:38085768..38085821,+!p1@ZNF540!1.09!16.96!ZNF540;;chr16:67198633..67198671,+!p1@HSF4!1.09!11.38!HSF4;;chrX:25034067..25034088,-!p1@ARX!1.09!11.38!ARX;;chr20:21494654..21494678,-!p2@NKX2-2!1.09!11.17!NKX2-2;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.96!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.08!10.96!ZNF323;;chr19:57019215..57019250,+!p1@ZNF471!1.07!16.14!ZNF471;;chr3:114343039..114343085,-!p8@ZBTB20!1.07!10.86!ZBTB20;;chr9:14314946..14314983,-!p8@NFIB!1.07!10.65!NFIB;;chr11:31832658..31832681,-!p1@PAX6!1.06!10.55!PAX6;;chr21:34442584..34442587,+!p3@OLIG1!1.06!10.45!OLIG1;;chr19:53636125..53636178,-!p1@ZNF415!1.05!29.58!ZNF415;;chr18:52989031..52989079,-!p2@TCF4!1.05!24.51!TCF4;;chr19:21512202..21512225,-!p1@ZNF708!1.04!52.13!ZNF708;;chr3:114343768..114343822,-!p1@ZBTB20!1.04!44.06!ZBTB20;;chr20:50159198..50159299,-!p1@NFATC2!1.04!14.69!NFATC2;;chr8:53322384..53322393,-!p7@ST18!1.04!10.03!ST18;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.31!ZNF680;;chr10:111987079..111987115,+!p3@MXI1!1.03!13.45!MXI1;;chr6:126070769..126070801,+!p1@HEY2!1.02!10.86!HEY2;;chr19:57183114..57183145,-!p1@ZNF835!1.02!10.55!ZNF835;;chr2:68592406..68592424,+!p1@PLEK!1.02!9.52!PLEK;;chr19:13135582..13135600,+!p3@NFIX!1.02!9.41!NFIX;;chrX:70315688..70315709,+!p1@FOXO4!1.01!21.72!FOXO4;;chr18:6414884..6414942,-!p1@L3MBTL4!1.01!11.79!L3MBTL4;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.31!ONECUT2;;chr12:106976656..106976672,+!p4@RFX4!1.01!9.31!RFX4;;chr9:126774018..126774055,+!p1@LHX2!1.01!9.31!LHX2;;chr3:114173720..114173794,-!p6@ZBTB20!1.00!9.00!ZBTB20;;chr8:30890810..30890880,-!p1@PURG!1.00!8.90!PURG;;chr11:8102846..8102892,+!p1@TUB!0.99!12.31!TUB;;chr2:60781201..60781258,-!p3@BCL11A!0.99!8.79!BCL11A;;chr21:39870339..39870443,-!p1@ERG!0.99!8.79!ERG;;chr7:50344289..50344323,+!p1@IKZF1!0.98!8.58!IKZF1;;chr14:29236269..29236285,+!p3@FOXG1!0.98!8.48!FOXG1;;chr8:80679993..80680011,-!p1@HEY1!0.97!12.31!HEY1;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.45!FOXF1;;chr1:170632285..170632309,+!p1@PRRX1!0.97!9.52!PRRX1;;chr2:177053386..177053402,+!p1@HOXD1!0.97!8.38!HOXD1;;chr16:67198683..67198698,+!p2@HSF4!0.97!8.27!HSF4;;chr15:57210961..57211012,+!p3@TCF12!0.96!27.00!TCF12;;chr11:47400062..47400077,-!p2@SPI1!0.96!8.17!SPI1;;chr1:8877692..8877732,-!p1@RERE!0.95!65.89!RERE;;chr7:64023441..64023462,-!p1@ZNF680!0.95!65.37!ZNF680;;chr5:178368186..178368238,+!p1@ZNF454!0.95!14.38!ZNF454;;chr7:86781858..86781879,+!p3@DMTF1!0.95!12.93!DMTF1;;chr20:2673383..2673441,+!p1@EBF4!0.95!12.62!EBF4;;chr12:125003087..125003141,-!p4@NCOR2!0.95!10.24!NCOR2;;chr9:1050331..1050363,+!p1@DMRT2!0.95!7.96!DMRT2;;chr12:103352277..103352324,+!p2@ASCL1!0.95!7.86!ASCL1;;chr3:187463179..187463201,-!p2@BCL6!0.94!32.89!BCL6;;chr14:21994337..21994442,-!p1@SALL2!0.94!22.13!SALL2;;chr16:79634595..79634620,-!p2@MAF!0.94!14.38!MAF;;chr5:139487363..139487444,+!p1@PURA!0.93!59.27!PURA;;chr3:114866084..114866118,-!p2@ZBTB20!0.93!27.93!ZBTB20;;chr6:91006518..91006570,-!p1@BACH2!0.93!17.89!BACH2;;chr5:124084493..124084524,-!p2@ZNF608!0.93!17.27!ZNF608;;chr6:41701581..41701613,-!p2@TFEB!0.93!7.55!TFEB;;chr18:55102628..55102646,+!p2@ONECUT2!0.93!7.55!ONECUT2;;chr6:41701898..41701939,-!p5@TFEB!0.93!7.45!TFEB;;chrX:101186981..101187030,-!p1@ZMAT1!0.92!24.72!ZMAT1;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.24!PCBP4;;chrX:107019163..107019179,-!p7@TSC22D3!0.92!8.48!TSC22D3;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.34!SOX7;;chr10:64134045..64134083,+!p3@ZNF365!0.92!7.24!ZNF365;;chr17:17726907..17726958,-!p2@SREBF1!0.91!46.44!SREBF1;;chr17:38219184..38219195,+!p3@THRA!0.91!14.69!THRA;;chr2:113057415..113057477,+!p3@ZC3H6!0.91!9.52!ZC3H6;;chr12:24715376..24715432,-!p1@SOX5!0.91!9.10!SOX5;;chr5:88178983..88179012,-!p1@MEF2C!0.90!55.75!MEF2C;;chr8:77593474..77593612,+!p1@ZFHX4!0.90!30.41!ZFHX4;;chr5:124082322..124082364,-!p1@ZNF608!0.90!18.51!ZNF608;;chr19:9879350..9879419,-!p2@ZNF846!0.90!15.31!ZNF846;;chr18:47814186..47814232,-!p2@CXXC1!0.90!14.69!CXXC1;;chrX:107018969..107019024,-!p6@TSC22D3!0.90!9.72!TSC22D3;;chr13:95364784..95364806,-!p1@SOX21!0.90!7.03!SOX21;;chr12:24102576..24102623,-!p2@SOX5!0.90!6.93!SOX5;;chr16:4323246..4323299,-!p5@TFAP4!0.90!6.93!TFAP4;;chr9:73029219..73029289,-!p2@KLF9!0.89!21.20!KLF9;;chr2:74229812..74229867,+!p1@TET3!0.89!17.69!TET3;;chr2:2334997..2335053,-!p1@MYT1L!0.89!6.83!MYT1L;;chr19:57352109..57352153,-!p2@ZIM2!0.89!6.72!ZIM2;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.21!ZFP106;;chr1:61924375..61924380,+!p6@NFIA!0.88!9.52!NFIA;;chr2:176033066..176033087,-!p2@ATF2!0.88!8.69!ATF2;;chr8:145560111..145560165,-!p2@SCRT1!0.88!6.62!SCRT1;;chr3:147127142..147127168,+!p1@ZIC1!0.88!6.52!ZIC1;;chr15:31658288..31658338,+!p4@KLF13!0.88!6.52!KLF13;;chr10:111985777..111985788,+!p4@MXI1!0.88!6.52!MXI1;;chr14:22005197..22005261,-!p3@SALL2!0.88!6.52!SALL2;;chr1:165414325..165414369,-!p1@RXRG!0.87!6.41!RXRG;;chr5:172483347..172483407,+!p1@C5orf41!0.86!49.54!CREBRF;;chr19:20748574..20748599,-!p1@ZNF737!0.86!39.72!ZNF737;;chr3:52001426..52001447,-!p3@PCBP4!0.86!18.41!PCBP4;;chr15:61521417..61521460,-!p2@RORA!0.86!14.38!RORA;;chr15:80696666..80696700,+!p4@ARNT2!0.86!6.31!ARNT2;;chr12:26277798..26277809,-!p5@BHLHE41!0.86!6.31!BHLHE41;;chr16:51185439..51185450,-!p8@SALL1!0.86!6.21!SALL1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.86!6.21!ZNF676;;chr1:61547894..61547968,+!p2@NFIA!0.85!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010225 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10154-103A1 | |id=FF:10154-103A1 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0010154 | |is_a=EFO:0002091;;FF:0000002;;FF:0010154 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12314 | |library_id=CNhs12314 | ||
|library_id_phase_based=2:CNhs12314 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10154 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10154 | |||
|name=thalamus, adult, donor10252 | |name=thalamus, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 62: | ||
|profile_cagescan=NCig10026,,, | |profile_cagescan=NCig10026,,, | ||
|profile_hcage=CNhs12314,LSID913,release011,COMPLETED | |profile_hcage=CNhs12314,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|top_motifs=SOX2:3.86534744814;SOX5:3.461378557;SOX{8,9,10}:3.09131237355;NFIX:2.94021646835;MYFfamily:2.93576150708;HBP1_HMGB_SSRP1_UBTF:2.89669781429;RREB1:2.89633821491;GATA4:2.89168152212;RFX2..5_RFXANK_RFXAP:2.61044074327;REST:2.57231346844;NHLH1,2:2.5607509101;ATF2:2.52095823459;ZFP161:2.51673685259;MED-1{core}:2.51466038503;CUX2:2.43562026534;FOXP1:2.42931768205;OCT4_SOX2{dimer}:2.40134316771;NKX3-2:2.2780060286;BPTF:2.25911087748;POU6F1:2.24662935831;PRDM1:2.19253351869;GTF2I:2.17496988896;FOXD3:2.13077135139;PATZ1:2.05898430858;DBP:1.98473563488;EGR1..3:1.93322490048;SOX17:1.93298809858;ZBTB6:1.93287740301;ARID5B:1.91342742627;TGIF1:1.9134039267;NKX6-1,2:1.88650123925;MZF1:1.88351173408;AR:1.86319857637;HIC1:1.8526288816;RFX1:1.85226239342;MTE{core}:1.80643283838;FOX{F1,F2,J1}:1.78323369121;TLX2:1.76218839796;FOXQ1:1.75716920482;LMO2:1.75452461671;TOPORS:1.7531699191;RBPJ:1.74741141838;FOXO1,3,4:1.74240458395;PRRX1,2:1.73865327469;FOXP3:1.73292142514;XBP1:1.73273248671;NR3C1:1.73096885276;CDC5L:1.72772477622;TFAP2B:1.69639918585;EP300:1.68969369777;MTF1:1.61954206278;MAFB:1.60516782854;POU5F1:1.54220174082;PAX6:1.53888450981;MAZ:1.53744369173;PAX5:1.53390919096;ZNF384:1.52470334319;FOXM1:1.52122135983;FOX{D1,D2}:1.47533438504;ZBTB16:1.42992903412;PDX1:1.40677918781;SMAD1..7,9:1.39082980657;SREBF1,2:1.34092888057;KLF4:1.27671874952;PAX4:1.25609593413;AHR_ARNT_ARNT2:1.24969292119;LEF1_TCF7_TCF7L1,2:1.21627807951;NRF1:1.20465176948;IKZF2:1.18940682789;T:1.15142833167;ZNF143:1.14673237985;MYBL2:1.14205302851;SP1:1.11569873619;STAT1,3:1.11144470246;HOXA9_MEIS1:1.1061668124;BREu{core}:1.08132617195;NANOG:1.04201093525;ONECUT1,2:1.00367875468;FOX{I1,J2}:0.980330282306;TLX1..3_NFIC{dimer}:0.963841002374;NFIL3:0.963302737517;HOX{A4,D4}:0.878942601814;EBF1:0.85627075483;STAT2,4,6:0.816738132907;SPZ1:0.80672345186;ZNF238:0.788447877673;TFAP2{A,C}:0.782770643116;HOX{A6,A7,B6,B7}:0.776891423695;HSF1,2:0.772468778886;GFI1B:0.709879572147;ALX1:0.69412198059;GTF2A1,2:0.673867196038;ZNF423:0.664802351859;JUN:0.647784365095;IRF7:0.631974541939;GFI1:0.616598915499;HAND1,2:0.568877612431;HMGA1,2:0.562698995638;ADNP_IRX_SIX_ZHX:0.558139879816;CRX:0.536303133423;HMX1:0.506168617447;CREB1:0.500223759158;POU3F1..4:0.498375045498;CDX1,2,4:0.492595246325;TFDP1:0.466783909763;PITX1..3:0.455974197574;ZIC1..3:0.446591296831;GCM1,2:0.398553063571;VSX1,2:0.321283851455;GZF1:0.303046219818;NFY{A,B,C}:0.278991043386;POU1F1:0.242117517306;IRF1,2:0.19697155155;PAX2:0.191735868742;FOXN1:0.189192056296;NKX2-3_NKX2-5:0.138847031298;NFATC1..3:0.0905260462385;RORA:0.0830294578469;FOXA2:0.0700037378929;MEF2{A,B,C,D}:0.00750724260114;TEF:-0.00978290218878;ATF5_CREB3:-0.027934942277;YY1:-0.0536463804356;MYOD1:-0.0591893448349;NKX2-2,8:-0.0804177469975;ZEB1:-0.0818350477541;PBX1:-0.12695524709;XCPE1{core}:-0.169164543468;AIRE:-0.200327922624;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214342890301;ESRRA:-0.240785127597;UFEwm:-0.253764276022;SPI1:-0.303233928358;LHX3,4:-0.339922685967;SPIB:-0.456046233536;ATF4:-0.468433198149;TFCP2:-0.4746165008;NFE2L2:-0.486198306177;bHLH_family:-0.487597841211;DMAP1_NCOR{1,2}_SMARC:-0.499672678596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.501181702348;EVI1:-0.5129228136;ETS1,2:-0.515730001303;HNF4A_NR2F1,2:-0.584993766876;FOXL1:-0.603965871496;TFAP4:-0.621391429721;IKZF1:-0.630641321409;NR1H4:-0.631433531477;CEBPA,B_DDIT3:-0.692828151065;NKX3-1:-0.737287638028;HIF1A:-0.753751863979;GATA6:-0.779664964088;NR5A1,2:-0.779848923472;ALX4:-0.795069983465;TP53:-0.795452682741;NFE2:-0.804796788599;NANOG{mouse}:-0.828597520993;PAX1,9:-0.840322546375;TBX4,5:-0.844856496204;SNAI1..3:-0.86719056529;ELK1,4_GABP{A,B1}:-0.931731790618;TEAD1:-0.94362620792;ATF6:-0.945064676818;HNF1A:-0.974126739683;ELF1,2,4:-0.977366696876;NFE2L1:-0.985079705711;FOSL2:-1.01725604751;PAX8:-1.01765977071;RXR{A,B,G}:-1.0430676508;NKX2-1,4:-1.05072895944;E2F1..5:-1.064673931;NFKB1_REL_RELA:-1.0848600766;FOS_FOS{B,L1}_JUN{B,D}:-1.15796914862;PAX3,7:-1.16242993324;BACH2:-1.18898981375;MYB:-1.19671497429;RUNX1..3:-1.20470701193;HLF:-1.20507227615;TBP:-1.27630341695;ESR1:-1.28224355854;POU2F1..3:-1.40305926504;SRF:-1.47479103286;TAL1_TCF{3,4,12}:-1.47761562606;HES1:-1.51767600572;RXRA_VDR{dimer}:-1.52690884268;NR6A1:-1.52889065765;GLI1..3:-1.58244219217;ZNF148:-1.60205141033;STAT5{A,B}:-2.15241197602;EN1,2:-2.25625153805;HOX{A5,B5}:-2.79879489502;PPARG:-2.97514001391 | |top_motifs=SOX2:3.86534744814;SOX5:3.461378557;SOX{8,9,10}:3.09131237355;NFIX:2.94021646835;MYFfamily:2.93576150708;HBP1_HMGB_SSRP1_UBTF:2.89669781429;RREB1:2.89633821491;GATA4:2.89168152212;RFX2..5_RFXANK_RFXAP:2.61044074327;REST:2.57231346844;NHLH1,2:2.5607509101;ATF2:2.52095823459;ZFP161:2.51673685259;MED-1{core}:2.51466038503;CUX2:2.43562026534;FOXP1:2.42931768205;OCT4_SOX2{dimer}:2.40134316771;NKX3-2:2.2780060286;BPTF:2.25911087748;POU6F1:2.24662935831;PRDM1:2.19253351869;GTF2I:2.17496988896;FOXD3:2.13077135139;PATZ1:2.05898430858;DBP:1.98473563488;EGR1..3:1.93322490048;SOX17:1.93298809858;ZBTB6:1.93287740301;ARID5B:1.91342742627;TGIF1:1.9134039267;NKX6-1,2:1.88650123925;MZF1:1.88351173408;AR:1.86319857637;HIC1:1.8526288816;RFX1:1.85226239342;MTE{core}:1.80643283838;FOX{F1,F2,J1}:1.78323369121;TLX2:1.76218839796;FOXQ1:1.75716920482;LMO2:1.75452461671;TOPORS:1.7531699191;RBPJ:1.74741141838;FOXO1,3,4:1.74240458395;PRRX1,2:1.73865327469;FOXP3:1.73292142514;XBP1:1.73273248671;NR3C1:1.73096885276;CDC5L:1.72772477622;TFAP2B:1.69639918585;EP300:1.68969369777;MTF1:1.61954206278;MAFB:1.60516782854;POU5F1:1.54220174082;PAX6:1.53888450981;MAZ:1.53744369173;PAX5:1.53390919096;ZNF384:1.52470334319;FOXM1:1.52122135983;FOX{D1,D2}:1.47533438504;ZBTB16:1.42992903412;PDX1:1.40677918781;SMAD1..7,9:1.39082980657;SREBF1,2:1.34092888057;KLF4:1.27671874952;PAX4:1.25609593413;AHR_ARNT_ARNT2:1.24969292119;LEF1_TCF7_TCF7L1,2:1.21627807951;NRF1:1.20465176948;IKZF2:1.18940682789;T:1.15142833167;ZNF143:1.14673237985;MYBL2:1.14205302851;SP1:1.11569873619;STAT1,3:1.11144470246;HOXA9_MEIS1:1.1061668124;BREu{core}:1.08132617195;NANOG:1.04201093525;ONECUT1,2:1.00367875468;FOX{I1,J2}:0.980330282306;TLX1..3_NFIC{dimer}:0.963841002374;NFIL3:0.963302737517;HOX{A4,D4}:0.878942601814;EBF1:0.85627075483;STAT2,4,6:0.816738132907;SPZ1:0.80672345186;ZNF238:0.788447877673;TFAP2{A,C}:0.782770643116;HOX{A6,A7,B6,B7}:0.776891423695;HSF1,2:0.772468778886;GFI1B:0.709879572147;ALX1:0.69412198059;GTF2A1,2:0.673867196038;ZNF423:0.664802351859;JUN:0.647784365095;IRF7:0.631974541939;GFI1:0.616598915499;HAND1,2:0.568877612431;HMGA1,2:0.562698995638;ADNP_IRX_SIX_ZHX:0.558139879816;CRX:0.536303133423;HMX1:0.506168617447;CREB1:0.500223759158;POU3F1..4:0.498375045498;CDX1,2,4:0.492595246325;TFDP1:0.466783909763;PITX1..3:0.455974197574;ZIC1..3:0.446591296831;GCM1,2:0.398553063571;VSX1,2:0.321283851455;GZF1:0.303046219818;NFY{A,B,C}:0.278991043386;POU1F1:0.242117517306;IRF1,2:0.19697155155;PAX2:0.191735868742;FOXN1:0.189192056296;NKX2-3_NKX2-5:0.138847031298;NFATC1..3:0.0905260462385;RORA:0.0830294578469;FOXA2:0.0700037378929;MEF2{A,B,C,D}:0.00750724260114;TEF:-0.00978290218878;ATF5_CREB3:-0.027934942277;YY1:-0.0536463804356;MYOD1:-0.0591893448349;NKX2-2,8:-0.0804177469975;ZEB1:-0.0818350477541;PBX1:-0.12695524709;XCPE1{core}:-0.169164543468;AIRE:-0.200327922624;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214342890301;ESRRA:-0.240785127597;UFEwm:-0.253764276022;SPI1:-0.303233928358;LHX3,4:-0.339922685967;SPIB:-0.456046233536;ATF4:-0.468433198149;TFCP2:-0.4746165008;NFE2L2:-0.486198306177;bHLH_family:-0.487597841211;DMAP1_NCOR{1,2}_SMARC:-0.499672678596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.501181702348;EVI1:-0.5129228136;ETS1,2:-0.515730001303;HNF4A_NR2F1,2:-0.584993766876;FOXL1:-0.603965871496;TFAP4:-0.621391429721;IKZF1:-0.630641321409;NR1H4:-0.631433531477;CEBPA,B_DDIT3:-0.692828151065;NKX3-1:-0.737287638028;HIF1A:-0.753751863979;GATA6:-0.779664964088;NR5A1,2:-0.779848923472;ALX4:-0.795069983465;TP53:-0.795452682741;NFE2:-0.804796788599;NANOG{mouse}:-0.828597520993;PAX1,9:-0.840322546375;TBX4,5:-0.844856496204;SNAI1..3:-0.86719056529;ELK1,4_GABP{A,B1}:-0.931731790618;TEAD1:-0.94362620792;ATF6:-0.945064676818;HNF1A:-0.974126739683;ELF1,2,4:-0.977366696876;NFE2L1:-0.985079705711;FOSL2:-1.01725604751;PAX8:-1.01765977071;RXR{A,B,G}:-1.0430676508;NKX2-1,4:-1.05072895944;E2F1..5:-1.064673931;NFKB1_REL_RELA:-1.0848600766;FOS_FOS{B,L1}_JUN{B,D}:-1.15796914862;PAX3,7:-1.16242993324;BACH2:-1.18898981375;MYB:-1.19671497429;RUNX1..3:-1.20470701193;HLF:-1.20507227615;TBP:-1.27630341695;ESR1:-1.28224355854;POU2F1..3:-1.40305926504;SRF:-1.47479103286;TAL1_TCF{3,4,12}:-1.47761562606;HES1:-1.51767600572;RXRA_VDR{dimer}:-1.52690884268;NR6A1:-1.52889065765;GLI1..3:-1.58244219217;ZNF148:-1.60205141033;STAT5{A,B}:-2.15241197602;EN1,2:-2.25625153805;HOX{A5,B5}:-2.79879489502;PPARG:-2.97514001391 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10154-103A1;search_select_hide=table117:FF:10154-103A1 | |||
}} | }} |
Latest revision as of 12:22, 3 June 2020
Name: | thalamus, adult, donor10252 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12314 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Download raw sequence, BAM & CTSS | ||||||||||||||
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HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12314
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12314
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.074 |
10 | 10 | 0.0567 |
100 | 100 | 0.371 |
101 | 101 | 0.401 |
102 | 102 | 0.925 |
103 | 103 | 0.0505 |
104 | 104 | 0.104 |
105 | 105 | 0.158 |
106 | 106 | 0.0249 |
107 | 107 | 0.129 |
108 | 108 | 0.918 |
109 | 109 | 9.81437e-4 |
11 | 11 | 0.00877 |
110 | 110 | 0.0519 |
111 | 111 | 0.219 |
112 | 112 | 0.332 |
113 | 113 | 0.332 |
114 | 114 | 0.191 |
115 | 115 | 0.823 |
116 | 116 | 0.144 |
117 | 117 | 0.0157 |
118 | 118 | 0.27 |
119 | 119 | 0.297 |
12 | 12 | 0.49 |
120 | 120 | 0.206 |
121 | 121 | 0.392 |
122 | 122 | 0.828 |
123 | 123 | 0.274 |
124 | 124 | 0.266 |
125 | 125 | 0.542 |
126 | 126 | 0.046 |
127 | 127 | 0.4 |
128 | 128 | 0.169 |
129 | 129 | 0.51 |
13 | 13 | 0.00362 |
130 | 130 | 0.34 |
131 | 131 | 0.0417 |
132 | 132 | 0.425 |
133 | 133 | 0.115 |
134 | 134 | 0.472 |
135 | 135 | 0.184 |
136 | 136 | 8.82695e-4 |
137 | 137 | 0.887 |
138 | 138 | 0.915 |
139 | 139 | 0.281 |
14 | 14 | 0.923 |
140 | 140 | 0.982 |
141 | 141 | 0.415 |
142 | 142 | 0.353 |
143 | 143 | 0.0409 |
144 | 144 | 0.697 |
145 | 145 | 0.29 |
146 | 146 | 0.624 |
147 | 147 | 0.804 |
148 | 148 | 0.475 |
149 | 149 | 0.28 |
15 | 15 | 0.0687 |
150 | 150 | 0.108 |
151 | 151 | 0.822 |
152 | 152 | 0.0656 |
153 | 153 | 0.89 |
154 | 154 | 0.278 |
155 | 155 | 0.958 |
156 | 156 | 0.412 |
157 | 157 | 0.409 |
158 | 158 | 0.0857 |
159 | 159 | 0.00477 |
16 | 16 | 0.0268 |
160 | 160 | 0.237 |
161 | 161 | 0.364 |
162 | 162 | 0.654 |
163 | 163 | 0.916 |
164 | 164 | 0.0136 |
165 | 165 | 0.168 |
166 | 166 | 0.812 |
167 | 167 | 0.903 |
168 | 168 | 0.741 |
169 | 169 | 0.0227 |
17 | 17 | 0.0905 |
18 | 18 | 0.0546 |
19 | 19 | 0.264 |
2 | 2 | 0.903 |
20 | 20 | 0.144 |
21 | 21 | 0.0383 |
22 | 22 | 0.227 |
23 | 23 | 0.389 |
24 | 24 | 0.0453 |
25 | 25 | 0.544 |
26 | 26 | 0.00313 |
27 | 27 | 0.517 |
28 | 28 | 0.855 |
29 | 29 | 0.00332 |
3 | 3 | 0.0684 |
30 | 30 | 0.925 |
31 | 31 | 0.91 |
32 | 32 | 0.00961 |
33 | 33 | 0.0461 |
34 | 34 | 0.675 |
35 | 35 | 0.614 |
36 | 36 | 0.241 |
37 | 37 | 0.0312 |
38 | 38 | 0.441 |
39 | 39 | 0.3 |
4 | 4 | 0.793 |
40 | 40 | 0.0541 |
41 | 41 | 0.312 |
42 | 42 | 0.265 |
43 | 43 | 0.141 |
44 | 44 | 0.123 |
45 | 45 | 0.68 |
46 | 46 | 0.0513 |
47 | 47 | 0.0791 |
48 | 48 | 0.063 |
49 | 49 | 0.384 |
5 | 5 | 0.928 |
50 | 50 | 0.481 |
51 | 51 | 0.387 |
52 | 52 | 0.592 |
53 | 53 | 0.474 |
54 | 54 | 0.536 |
55 | 55 | 0.727 |
56 | 56 | 0.596 |
57 | 57 | 0.405 |
58 | 58 | 0.362 |
59 | 59 | 0.0554 |
6 | 6 | 0.797 |
60 | 60 | 0.0864 |
61 | 61 | 0.137 |
62 | 62 | 0.207 |
63 | 63 | 0.338 |
64 | 64 | 0.138 |
65 | 65 | 0.266 |
66 | 66 | 0.112 |
67 | 67 | 0.329 |
68 | 68 | 0.446 |
69 | 69 | 0.262 |
7 | 7 | 0.121 |
70 | 70 | 0.0628 |
71 | 71 | 0.00918 |
72 | 72 | 0.272 |
73 | 73 | 0.0249 |
74 | 74 | 0.869 |
75 | 75 | 0.0263 |
76 | 76 | 0.332 |
77 | 77 | 0.118 |
78 | 78 | 0.00189 |
79 | 79 | 0.361 |
8 | 8 | 0.0604 |
80 | 80 | 0.437 |
81 | 81 | 0.509 |
82 | 82 | 0.636 |
83 | 83 | 0.0468 |
84 | 84 | 0.572 |
85 | 85 | 0.366 |
86 | 86 | 0.211 |
87 | 87 | 1.07957e-4 |
88 | 88 | 0.628 |
89 | 89 | 0.165 |
9 | 9 | 0.366 |
90 | 90 | 0.0702 |
91 | 91 | 0.737 |
92 | 92 | 0.448 |
93 | 93 | 0.904 |
94 | 94 | 0.209 |
95 | 95 | 0.0116 |
96 | 96 | 0.774 |
97 | 97 | 0.744 |
98 | 98 | 0.222 |
99 | 99 | 0.588 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12314
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010154 human thalamus - adult donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001897 (dorsal plus ventral thalamus)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0010225 (thalamic complex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010154 (human thalamus - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)