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FF:11426-118G4: Difference between revisions

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|def=
|def=
|expression_enrichment_score=chrX:591524..591527,+!p1@SHOX!1.61!39.64!SHOX;;chr5:72744594..72744609,-!p1@FOXD1!1.58!164.27!FOXD1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.03!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.50!41.67!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.48!29.13!DLX5;;chr7:19157248..19157268,-!p1@TWIST1!1.42!68.95!TWIST1;;chr16:86600426..86600441,+!p1@FOXC2!1.42!61.58!FOXC2;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.71!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.35!106.57!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!1.30!31.16!FOXD1;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!30.79!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!1.27!20.28!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!1.25!205.20!NR4A1;;chr9:132427972..132428056,+!p1@PRRX2!1.19!18.99!PRRX2;;chr4:174451370..174451387,-!p1@HAND2!1.19!14.38!HAND2;;chr12:66218255..66218304,+!p3@HMGA2!1.13!33.56!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.11!353.80!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.09!11.43!SOX11;;chr9:132427883..132427951,+!p2@PRRX2!1.07!10.88!PRRX2;;chr4:174450089..174450153,-!p2@HAND2!1.07!10.69!HAND2;;chr2:176973498..176973524,+!p1@HOXD10!1.05!10.14!HOXD10;;chr14:61116183..61116208,-!p1@SIX1!1.01!35.95!SIX1;;chr2:200322654..200322707,-!p2@SATB2!1.00!13.27!SATB2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!9.03!GLIS1;;chr3:71630980..71631110,-!p3@FOXP1!0.96!29.31!FOXP1;;chr1:170633058..170633084,+!p5@PRRX1!0.95!7.93!PRRX1;;chr12:80085061..80085119,-!p6@PAWR!0.94!12.54!PAWR;;chr5:72743793..72743855,-!p4@FOXD1!0.94!9.22!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.30!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.92!35.21!HMGA2;;chr16:86600870..86600921,+!p2@FOXC2!0.92!7.37!FOXC2;;chr12:66218836..66218888,+!p1@HMGA2!0.90!68.59!HMGA2;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.51!NFIX;;chr5:72744562..72744573,-!p3@FOXD1!0.90!8.85!FOXD1;;chr8:25902876..25902936,-!p1@EBF2!0.90!7.01!EBF2;;chr5:321810..321877,+!p1@AHRR!0.89!22.68!AHRR;;chr14:24837368..24837401,+!p1@NFATC4!0.89!16.41!NFATC4;;chr11:65667884..65667895,-!p2@FOSL1!0.88!26.73!FOSL1;;chr5:72744336..72744359,-!p5@FOXD1!0.88!6.64!FOXD1;;chr7:27196217..27196246,-!p2@HOXA7!0.87!6.45!HOXA7;;chr10:131762504..131762555,-!p1@EBF3!0.87!6.45!EBF3;;chr6:134210243..134210257,+!p1@TCF21!0.86!6.27!TCF21;;chr7:27205106..27205134,-!p2@HOXA9!0.86!6.27!HOXA9;;chr15:96869255..96869291,+!p6@NR2F2!0.84!11.25!NR2F2;;chr17:59477233..59477263,+!p1@TBX2!0.83!18.99!TBX2;;chr7:19157043..19157088,-!p2@TWIST1!0.83!15.30!TWIST1;;chr2:176994919..176994931,+!p2@HOXD8!0.83!5.72!HOXD8;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.10!DRAP1;;chr21:30671690..30671762,+!p2@BACH1!0.82!20.28!BACH1;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.24!SNAI2;;chr7:27213893..27213954,-!p1@HOXA10!0.81!5.53!HOXA10;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.53!SIX2;;chr15:96869114..96869160,+!p11@NR2F2!0.80!7.37!NR2F2;;chr7:27205136..27205164,-!p1@HOXA9!0.80!5.35!HOXA9;;chr9:96717629..96717644,-!p1@BARX1!0.79!5.16!BARX1;;chr16:54964740..54964789,+!p1@IRX5!0.77!7.37!IRX5;;chr2:176981499..176981522,+!p2@HOXD10!0.76!4.79!HOXD10;;chr8:49833978..49833996,-!p1@SNAI2!0.75!106.38!SNAI2;;chr5:2751762..2751784,-!p1@IRX2!0.75!4.61!IRX2;;chr7:27192185..27192209,-!p1@HOXA3!0.75!4.61!HOXA3;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.61!HOXD8;;chr1:170632477..170632506,+!p6@PRRX1!0.75!4.61!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.74!560.48!HMGA1;;chr11:65686732..65686756,+!p2@DRAP1!0.73!20.28!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.73!6.64!HMGA2;;chr15:96869292..96869320,+!p15@NR2F2!0.73!6.64!NR2F2;;chr6:45296048..45296082,+!p1@RUNX2!0.73!5.16!RUNX2;;chr1:170632723..170632739,+!p8@PRRX1!0.73!4.42!PRRX1;;chr12:80084279..80084293,-!p8@PAWR!0.72!7.37!PAWR;;chr8:67525443..67525459,-!p2@MYBL1!0.72!6.64!MYBL1;;chr7:96654026..96654061,-!p2@DLX5!0.72!4.24!DLX5;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.72!4.24!HOXC5;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.24!ZNF668;;chr8:77593474..77593612,+!p1@ZFHX4!0.71!19.36!ZFHX4;;chr1:200379104..200379128,-!p2@ZNF281!0.71!11.06!ZNF281;;chr11:65686802..65686818,+!p6@DRAP1!0.71!7.74!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.71!5.53!DRAP1;;chr12:115121962..115121987,-!p1@TBX3!0.70!38.53!TBX3;;chr5:133450365..133450444,+!p1@TCF7!0.70!20.65!TCF7;;chr2:177053386..177053402,+!p1@HOXD1!0.70!4.06!HOXD1;;chr6:19837592..19837621,+!p1@ID4!0.69!26.92!ID4;;chr11:65687158..65687216,+!p4@DRAP1!0.69!25.44!DRAP1;;chr2:176969097..176969109,+!p3@HOXD11!0.69!3.87!HOXD11;;chr19:47523058..47523114,+!p1@NPAS1!0.69!3.87!NPAS1;;chr7:137686763..137686784,-!p5@CREB3L2!0.68!7.01!CREB3L2;;chr1:8938709..8938720,-!p3@ENO1!0.67!204.47!ENO1;;chr18:19749541..19749557,+!p1@GATA6!0.67!12.91!GATA6;;chr15:96869222..96869251,+!p18@NR2F2!0.67!4.42!NR2F2;;chr15:96869165..96869183,+!p20@NR2F2!0.67!3.69!NR2F2;;chr12:115122318..115122331,-!p2@TBX3!0.67!3.69!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.67!3.69!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.66!21.94!RARG;;chr8:22550982..225509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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000062
|ffid_belonging_in_development=CL:0000134,CL:0000335
|ffid_belonging_in_development=CL:0000134,CL:0000335
|fonse_cell_line=
|fonse_cell_line=

Revision as of 15:14, 15 May 2017

Name:Osteoblast, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12036
Sample type:primary cells
Genomic View: UCSC
FANTOM CAT:1
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebone
dev stage22 weeks old fetus
sexfemale
ageembryo 22week
cell typeosteoblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1419
catalog numberCA406-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005685
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12036 CAGE DRX008394 DRR009266
Accession ID Hg19

Library idBAMCTSS
CNhs12036 DRZ000691 DRZ002076
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0294
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.137
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.284
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.196
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.248
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0519
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.324
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.316
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.399
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0735
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.36
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0735
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.295
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0983
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.454
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.136
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.564
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.284
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.531
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.671
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12036

Jaspar motifP-value
MA0002.20.128
MA0003.10.636
MA0004.10.566
MA0006.10.295
MA0007.10.875
MA0009.10.149
MA0014.10.434
MA0017.10.0864
MA0018.20.523
MA0019.10.253
MA0024.10.297
MA0025.10.512
MA0027.10.623
MA0028.10.26
MA0029.10.126
MA0030.10.248
MA0031.10.0353
MA0035.20.545
MA0038.10.237
MA0039.20.483
MA0040.10.806
MA0041.10.356
MA0042.10.623
MA0043.10.0558
MA0046.10.133
MA0047.20.609
MA0048.10.0472
MA0050.18.40424e-10
MA0051.16.77172e-4
MA0052.10.158
MA0055.10.356
MA0057.10.509
MA0058.10.377
MA0059.10.505
MA0060.10.00986
MA0061.10.00733
MA0062.20.00886
MA0065.20.029
MA0066.10.637
MA0067.10.155
MA0068.10.767
MA0069.10.619
MA0070.10.0689
MA0071.10.632
MA0072.10.6
MA0073.10.965
MA0074.10.915
MA0076.10.484
MA0077.10.596
MA0078.10.76
MA0079.20.222
MA0080.22.15651e-9
MA0081.10.011
MA0083.18.08546e-10
MA0084.10.364
MA0087.10.951
MA0088.10.186
MA0090.10.00221
MA0091.10.556
MA0092.10.664
MA0093.10.687
MA0099.20.0571
MA0100.10.789
MA0101.10.0878
MA0102.20.00311
MA0103.10.00665
MA0104.20.0413
MA0105.19.81256e-6
MA0106.10.812
MA0107.10.0327
MA0108.24.22823e-9
MA0111.10.0498
MA0112.20.0619
MA0113.10.922
MA0114.10.00855
MA0115.10.0993
MA0116.13.07242e-4
MA0117.10.945
MA0119.10.419
MA0122.10.9
MA0124.10.813
MA0125.10.725
MA0131.10.979
MA0135.10.0239
MA0136.12.28501e-9
MA0137.20.135
MA0138.20.768
MA0139.10.133
MA0140.10.8
MA0141.10.309
MA0142.10.636
MA0143.10.67
MA0144.10.22
MA0145.10.648
MA0146.10.911
MA0147.10.135
MA0148.10.514
MA0149.10.685
MA0150.10.233
MA0152.10.0756
MA0153.10.178
MA0154.10.00262
MA0155.10.518
MA0156.11.41332e-4
MA0157.10.173
MA0159.10.0216
MA0160.10.262
MA0162.10.948
MA0163.10.00243
MA0164.10.576
MA0258.10.0258
MA0259.10.672



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12036

Novel motifP-value
10.0723
100.0326
1000.199
1010.0838
1020.399
1030.18
1040.545
1050.51
1060.379
1070.576
1080.963
1090.493
110.621
1100.431
1110.229
1120.0779
1130.0788
1140.392
1150.0828
1160.578
1170.0879
1180.183
1190.183
120.903
1200.591
1210.563
1220.91
1231.35057e-4
1240.059
1250.392
1260.387
1270.629
1280.552
1290.415
130.202
1300.136
1310.946
1320.583
1330.654
1340.188
1350.972
1360.645
1370.2
1380.131
1390.146
140.193
1400.0806
1410.0151
1420.252
1430.592
1440.618
1450.422
1460.951
1470.3
1480.00208
1490.81
150.232
1500.757
1510.484
1520.00598
1530.317
1540.48
1550.0343
1560.701
1570.167
1580.0108
1590.529
160.649
1600.977
1610.892
1620.517
1630.791
1640.258
1650.61
1660.199
1670.352
1680.778
1690.919
170.999
180.925
190.641
20.669
200.595
210.757
220.682
230.421
240.589
250.331
260.992
270.851
280.0943
290.702
30.161
300.219
310.891
321.08465e-6
330.838
340.936
350.0662
360.0142
370.749
380.212
390.754
40.462
400.285
410.288
420.244
430.259
440.731
450.979
460.421
470.155
480.321
490.115
50.295
500.935
510.585
520.774
530.0363
540.676
550.726
560.758
570.437
580.0946
590.548
60.535
600.272
610.348
620.136
630.603
640.499
650.723
660.332
670.614
680.0356
690.411
70.227
700.155
710.105
720.237
730.055
740.876
750.183
760.19
770.909
780.0585
790.299
80.953
800.631
810.288
820.277
830.429
840.476
850.565
860.459
870.172
880.447
890.82
90.628
900.028
910.37
920.547
930.766
940.243
950.978
960.178
970.577
980.155
990.00588



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12036


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)

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