FFCP PHASE1:Mm9::chrX:7328015..7328042,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=54648 | |EntrezGene=54648 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000139499,ENSMUST00000154977_5end | |association_with_transcript=0bp_to_ENSMUST00000139499,ENSMUST00000154977_5end | ||
|cluster_id=chrX:7328015..7328042,- | |||
|description=CAGE_peak_1_at_Ccdc120_5end | |description=CAGE_peak_1_at_Ccdc120_5end | ||
|id=chrX:7328015..7328042,- | |id=chrX:7328015..7328042,- | ||
|ontology_enrichment_celltype=CL:0000540!7.25e-13!33;CL:0000047!7.25e-13!33;CL:0000031!7.25e-13!33;CL:0000404!7.25e-13!33;CL:0000117!2.85e-11!23;CL:0000337!2.85e-11!23;CL:0000393!1.45e-10!39;CL:0000211!1.45e-10!39;CL:0002319!1.20e-08!43;CL:0000221!1.24e-08!44;CL:0000133!1.24e-08!44;CL:0000055!5.96e-07!50 | |ontology_enrichment_celltype=CL:0000540!7.25e-13!33;CL:0000047!7.25e-13!33;CL:0000031!7.25e-13!33;CL:0000404!7.25e-13!33;CL:0000117!2.85e-11!23;CL:0000337!2.85e-11!23;CL:0000393!1.45e-10!39;CL:0000211!1.45e-10!39;CL:0002319!1.20e-08!43;CL:0000221!1.24e-08!44;CL:0000133!1.24e-08!44;CL:0000055!5.96e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.17e-13,33;CL:0000047,4.17e-13,33;CL:0000031,4.17e-13,33;CL:0000404,4.17e-13,33;CL:0000117,1.77e-11,23;CL:0000337,1.77e-11,23;CL:0000393,6.50e-11,39;CL:0000211,6.50e-11,39;CL:0002319,7.43e-09,43;CL:0000221,7.70e-09,44;CL:0000133,7.70e-09,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.66e-21!73;UBERON:0005743!4.66e-21!73;UBERON:0000073!1.36e-19!75;UBERON:0001016!1.36e-19!75;UBERON:0004121!1.04e-18!102;UBERON:0000924!1.04e-18!102;UBERON:0006601!1.04e-18!102;UBERON:0002346!5.32e-18!71;UBERON:0003075!5.32e-18!71;UBERON:0007284!5.32e-18!71;UBERON:0001049!7.84e-17!52;UBERON:0005068!7.84e-17!52;UBERON:0006241!7.84e-17!52;UBERON:0007135!7.84e-17!52;UBERON:0000033!3.85e-16!63;UBERON:0003056!1.65e-15!49;UBERON:0000955!4.19e-15!50;UBERON:0006238!4.19e-15!50;UBERON:0002616!1.51e-14!49;UBERON:0003080!1.30e-13!40;UBERON:0002780!3.22e-13!39;UBERON:0001890!3.22e-13!39;UBERON:0006240!3.22e-13!39;UBERON:0002020!2.06e-12!34;UBERON:0002791!1.58e-09!29;UBERON:0003528!1.58e-09!29;UBERON:0001893!1.58e-09!29;UBERON:0000153!2.12e-09!94;UBERON:0007811!3.93e-08!86;UBERON:0000956!5.46e-08!21;UBERON:0001869!5.46e-08!21;UBERON:0000203!5.46e-08!21 | |ontology_enrichment_uberon=UBERON:0001017!4.66e-21!73;UBERON:0005743!4.66e-21!73;UBERON:0000073!1.36e-19!75;UBERON:0001016!1.36e-19!75;UBERON:0004121!1.04e-18!102;UBERON:0000924!1.04e-18!102;UBERON:0006601!1.04e-18!102;UBERON:0002346!5.32e-18!71;UBERON:0003075!5.32e-18!71;UBERON:0007284!5.32e-18!71;UBERON:0001049!7.84e-17!52;UBERON:0005068!7.84e-17!52;UBERON:0006241!7.84e-17!52;UBERON:0007135!7.84e-17!52;UBERON:0000033!3.85e-16!63;UBERON:0003056!1.65e-15!49;UBERON:0000955!4.19e-15!50;UBERON:0006238!4.19e-15!50;UBERON:0002616!1.51e-14!49;UBERON:0003080!1.30e-13!40;UBERON:0002780!3.22e-13!39;UBERON:0001890!3.22e-13!39;UBERON:0006240!3.22e-13!39;UBERON:0002020!2.06e-12!34;UBERON:0002791!1.58e-09!29;UBERON:0003528!1.58e-09!29;UBERON:0001893!1.58e-09!29;UBERON:0000153!2.12e-09!94;UBERON:0007811!3.93e-08!86;UBERON:0000956!5.46e-08!21;UBERON:0001869!5.46e-08!21;UBERON:0000203!5.46e-08!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.70e-21,73;UBERON:0001016,4.75e-20,75;UBERON:0004121,7.99e-20,95;UBERON:0000924,7.99e-20,95;UBERON:0006601,7.99e-20,95;UBERON:0002346,1.37e-19,64;UBERON:0003075,1.37e-19,64;UBERON:0007284,1.37e-19,64;UBERON:0010371,2.22e-18,73;UBERON:0000073,9.15e-18,54;UBERON:0001049,5.32e-17,52;UBERON:0005068,5.32e-17,52;UBERON:0006241,5.32e-17,52;UBERON:0007135,5.32e-17,52;UBERON:0003056,1.19e-15,49;UBERON:0000955,1.28e-14,47;UBERON:0006238,1.28e-14,47;UBERON:0002616,4.69e-14,46;UBERON:0003080,1.03e-13,40;UBERON:0002780,2.61e-13,39;UBERON:0001890,2.61e-13,39;UBERON:0006240,2.61e-13,39;UBERON:0002020,1.75e-12,34;UBERON:0010314,5.77e-11,92;UBERON:0003528,1.51e-09,29;UBERON:0002791,1.51e-09,29;UBERON:0001893,1.51e-09,29;UBERON:0000956,5.68e-08,21;UBERON:0001869,5.68e-08,21;UBERON:0000203,5.68e-08,21 | |||
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|phase1_expression=4.80446541314382,0,1.36499771816861,1.20985684522732,0.500895729946347,2.18243053485457,2.10251376535973,0,0,0,0,0,0,0.0874204024189974,0,0,0.699561878128147,0.157731082679119,0.137114433605739,0,3.06155844543851,0.695036658406197,0,0.95995453676044,1.60586496747019,0.57423196411502,0.430761996159075,1.29282739611533,0.380046838912748,0.252030129759931,0.221730510655305,0.635030673459631,1.84519436275371,0,2.3108129580102,0.997407872150954,1.63335485009895,0,0,0,0,0,0,3.14742044938943,2.53442328048786,4.77221555620372,6.25913075478431,1.09012578190223,1.09843091367236,0.777719596297134,1.81982348112971,0,0,0,0,2.05807548828758,1.43266719969378,0,27.5150386769053,25.9205579843296,24.719424736741,4.06613438482959,2.66788438833342,0.449949858640699,0.988866362566974,4.9733608046227,4.19440154725767,3.84218305321555,14.5165457231869,15.5256829081444,15.3537221786509,12.5686433137674,11.9269012113871,17.5161842877384,19.6483215587385,27.5765635983006,7.70811166995721,5.2351808614927,3.37934373163736,23.3438729282443,23.1463738314096,23.4411016750542,2.51264699101243,2.8138130501584,3.0559649555362,15.0260578591571,11.3897344639282,15.4711540034999,0.227178579999552,1.058001841495,4.34796733052517,0.860423876981386,0,0,0,0,0.842666520790511,4.26075806445144,3.11743205523443,3.88673531961374,3.52108549441701,3.84979432242953,5.09610479413291,7.11066703153331,2.81438353314578,3.29367825117628,2.02209778005913,0.5709193985953,1.29468941823586,1.63286352971307,4.16364784238726,4.26251669636998,2.7673859670727,2.11011696773672,2.70454026412121,2.01066546127481,1.23597483867187,0.86759614151947,0.884610551949874,1.7794353494215,0.883366073841574,0.484875253135222,3.72783522436244,8.19786231632332,7.54008144528438,1.02182822083437,1.1981512450592,0.599902730993408,0.762421362438388,6.89036941262184,3.20250421973039,25.3821791267986,5.04090528557602,7.41574826257959,6.02585329222724,6.65189178577806,4.88828946481518,0.870848794270651,2.52722758433675,1.47309299120532,8.32770834961304,7.58676944630461,6.48223667299257,5.12396380641431,7.62008790494872,6.79002717509704,6.65282244374075,2.58703370739016,6.25147179505242,10.2117283290622,8.79755620819744,4.60311038097907,7.78532297831674,2.78601733217733,3.08673204611915,7.96137067273973,0.702213187313235,0.51469581422943,0.284163499395593,3.10688658803253,2.57978665979206,2.16074473753218,3.78791576936336,2.75469924446365,3.5481435964097,1.16266972375204,0.804820204198858,0.350296027101508,0.987359099480883,0.492502392237286,0.729619285912702,0,0.878200461164203,0.805238512562231,6.30869845692382,16.8763564302026,0,0,6.39864751605702,3.94802342162745,4.63922860759536,2.01683524623343,2.44615848229357,1.90225626112559,2.37264530772256,2.14108641141214,2.01068167040216,1.59165177632921,0.779856348476481,0,1.08069024937347,0.796565093017469,6.63837653335786,5.02693455482807,9.01661885384643,4.68398054044223,4.07300223052014,6.24208797023835,3.98390183882821,2.50937251565324,1.56998727841375,2.34454611451421,0.296452627087149,0.667380422864376,1.37591296579242,0.674586337154561,0.608580364165509,0.482354319504834,0.25462585178142,0.287696137450811,0.486405680325106,0.274561413188081,0,0,0.312037673114561,0.252578877947112,0.717589654087649,0.482443521363367,1.29327233116623,3.97931964718018,7.00749398700711,7.63852885988347,6.10194645550105,3.68513766371995,2.38043640886014,1.75620283072019,3.62560831444239,2.87904096543407,2.87018583583477,0.327726629431476,1.89953480052485,2.02508682014116,1.50791283939272,1.63171705145613,1.96705709207614,0.551873492609465,2.72936002979246,3.7507739709505,2.45902418065013,1.00988370881749,5.99465616890888,3.90438744296638,4.52389135238878,4.06246956519338,6.46116154838943,3.96307143104365,5.66734982344852,9.64444331107329,5.92931666919785,9.96096080907602,3.97432238583152,6.94455854302295,3.58351310577867,2.96946221350564,1.32745138339963,7.04063844849446,4.83717691143602,2.82907619633847,2.95301892880773,3.07435147943927,2.84271122485043,2.90826983582004,4.63446591900138,1.26414703174326,0,0,4.42571487479924,8.28281032544027,10.8661294377514,9.00215547132688,7.27094957933322,8.20496560969525,7.24015690649332,4.87143918583359,0.938686832254841,0.21183207086382,0.661585194164886,4.78170133530292,4.35953952078945,2.95533332147964,3.22305328808468,2.46211349617592,1.1659233465194,3.15223013417866,0.170870880797853,4.54051109519089,1.48155621895769,0.188368457004691,0.27338845544205,0.686334519619568,1.18984900995699,0.839708713941948,1.38199973804424,1.90934123603023,9.33191181064349,7.5228202836934,3.45617090629764,2.92723614420256,2.62035076495413,2.83215127408124,2.97552440611209,1.30877970992015,0.777689839750757,0.621339313086926,0,7.32631075615496,5.12921320417003,8.36140109879405,6.84547064431975,5.4065960157049,5.63314745499619,8.85389816938861,8.91304427618542,3.62376181239009,0.864090018773596,0.316011120628178,5.6763060281246,3.18403967210964,2.5984164595559,2.50637373934474,1.19208812868759,1.20195449519969,0.8861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| ||
|short_description=p1@Ccdc120 | |short_description=p1@Ccdc120 | ||
}} | }} |
Latest revision as of 00:32, 2 October 2015
Short description: | p1@Ccdc120 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ccdc120_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000139499, ENSMUST00000154977_5end |
EntrezGene: | Ccdc120 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.17e-13 | 33 |
neuronal stem cell | 4.17e-13 | 33 |
neuroblast | 4.17e-13 | 33 |
electrically signaling cell | 4.17e-13 | 33 |
CNS neuron (sensu Vertebrata) | 1.77e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.77e-11 | 23 |
electrically responsive cell | 6.50e-11 | 39 |
electrically active cell | 6.50e-11 | 39 |
neural cell | 7.43e-09 | 43 |
ectodermal cell | 7.70e-09 | 44 |
neurectodermal cell | 7.70e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.70e-21 | 73 |
nervous system | 4.75e-20 | 75 |
ectoderm-derived structure | 7.99e-20 | 95 |
ectoderm | 7.99e-20 | 95 |
presumptive ectoderm | 7.99e-20 | 95 |
neurectoderm | 1.37e-19 | 64 |
neural plate | 1.37e-19 | 64 |
presumptive neural plate | 1.37e-19 | 64 |
ecto-epithelium | 2.22e-18 | 73 |
regional part of nervous system | 9.15e-18 | 54 |
neural tube | 5.32e-17 | 52 |
neural rod | 5.32e-17 | 52 |
future spinal cord | 5.32e-17 | 52 |
neural keel | 5.32e-17 | 52 |
pre-chordal neural plate | 1.19e-15 | 49 |
brain | 1.28e-14 | 47 |
future brain | 1.28e-14 | 47 |
regional part of brain | 4.69e-14 | 46 |
anterior neural tube | 1.03e-13 | 40 |
regional part of forebrain | 2.61e-13 | 39 |
forebrain | 2.61e-13 | 39 |
future forebrain | 2.61e-13 | 39 |
gray matter | 1.75e-12 | 34 |
structure with developmental contribution from neural crest | 5.77e-11 | 92 |
brain grey matter | 1.51e-09 | 29 |
regional part of telencephalon | 1.51e-09 | 29 |
telencephalon | 1.51e-09 | 29 |
cerebral cortex | 5.68e-08 | 21 |
cerebral hemisphere | 5.68e-08 | 21 |
pallium | 5.68e-08 | 21 |