FFCP PHASE1:Mm9::chrX:72823527..72823586,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=67790 | |EntrezGene=67790 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BHC1,Q0PD14 | |UniProt=Q8BHC1,Q0PD14 | ||
|association_with_transcript=0bp_to_ENSMUST00000033545,NM_175122,uc009tqe.1_5end | |association_with_transcript=0bp_to_ENSMUST00000033545,NM_175122,uc009tqe.1_5end | ||
|cluster_id=chrX:72823527..72823586,- | |||
|description=CAGE_peak_1_at_Rab39b_5end | |description=CAGE_peak_1_at_Rab39b_5end | ||
|id=chrX:72823527..72823586,- | |id=chrX:72823527..72823586,- | ||
|ontology_enrichment_celltype=CL:0000540!2.57e-15!33;CL:0000047!2.57e-15!33;CL:0000031!2.57e-15!33;CL:0000404!2.57e-15!33;CL:0000221!1.60e-14!44;CL:0000133!1.60e-14!44;CL:0002319!3.51e-14!43;CL:0000117!4.55e-12!23;CL:0000337!4.55e-12!23;CL:0000393!2.66e-11!39;CL:0000211!2.66e-11!39;CL:0000055!3.16e-10!50 | |ontology_enrichment_celltype=CL:0000540!2.57e-15!33;CL:0000047!2.57e-15!33;CL:0000031!2.57e-15!33;CL:0000404!2.57e-15!33;CL:0000221!1.60e-14!44;CL:0000133!1.60e-14!44;CL:0002319!3.51e-14!43;CL:0000117!4.55e-12!23;CL:0000337!4.55e-12!23;CL:0000393!2.66e-11!39;CL:0000211!2.66e-11!39;CL:0000055!3.16e-10!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.00e-17,33;CL:0000047,9.00e-17,33;CL:0000031,9.00e-17,33;CL:0000404,9.00e-17,33;CL:0000221,3.65e-16,44;CL:0000133,3.65e-16,44;CL:0002319,8.71e-16,43;CL:0000117,3.52e-13,23;CL:0000337,3.52e-13,23;CL:0000393,4.73e-12,39;CL:0000211,4.73e-12,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.35e-33!75;UBERON:0001016!1.35e-33!75;UBERON:0001017!2.61e-33!73;UBERON:0005743!2.61e-33!73;UBERON:0004121!3.60e-31!102;UBERON:0000924!3.60e-31!102;UBERON:0006601!3.60e-31!102;UBERON:0002346!3.37e-29!71;UBERON:0003075!3.37e-29!71;UBERON:0007284!3.37e-29!71;UBERON:0000033!4.86e-28!63;UBERON:0001049!3.76e-25!52;UBERON:0005068!3.76e-25!52;UBERON:0006241!3.76e-25!52;UBERON:0007135!3.76e-25!52;UBERON:0000955!2.04e-24!50;UBERON:0006238!2.04e-24!50;UBERON:0003056!4.46e-24!49;UBERON:0002616!9.74e-24!49;UBERON:0003080!2.61e-20!40;UBERON:0002780!1.29e-19!39;UBERON:0001890!1.29e-19!39;UBERON:0006240!1.29e-19!39;UBERON:0002020!3.75e-18!34;UBERON:0002791!1.22e-15!29;UBERON:0003528!1.22e-15!29;UBERON:0001893!1.22e-15!29;UBERON:0000153!1.28e-13!94;UBERON:0007811!3.61e-13!86;UBERON:0000956!2.47e-11!21;UBERON:0001869!2.47e-11!21;UBERON:0000203!2.47e-11!21;UBERON:0002619!1.74e-09!17;UBERON:0002021!1.25e-07!10;UBERON:0000411!1.25e-07!10;UBERON:0001950!1.25e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.39e-37,75;UBERON:0001017,4.97e-37,73;UBERON:0004121,5.67e-35,95;UBERON:0000924,5.67e-35,95;UBERON:0006601,5.67e-35,95;UBERON:0002346,4.76e-34,64;UBERON:0003075,4.76e-34,64;UBERON:0007284,4.76e-34,64;UBERON:0000073,1.68e-29,54;UBERON:0010371,1.24e-28,73;UBERON:0001049,5.38e-28,52;UBERON:0005068,5.38e-28,52;UBERON:0006241,5.38e-28,52;UBERON:0007135,5.38e-28,52;UBERON:0003056,1.82e-26,49;UBERON:0000955,6.73e-25,47;UBERON:0006238,6.73e-25,47;UBERON:0002616,3.68e-24,46;UBERON:0003080,2.69e-22,40;UBERON:0002780,1.58e-21,39;UBERON:0001890,1.58e-21,39;UBERON:0006240,1.58e-21,39;UBERON:0002020,6.55e-20,34;UBERON:0010314,4.82e-19,92;UBERON:0003528,3.97e-17,29;UBERON:0002791,3.97e-17,29;UBERON:0001893,3.97e-17,29;UBERON:0000956,2.29e-12,21;UBERON:0001869,2.29e-12,21;UBERON:0000203,2.29e-12,21;UBERON:0002619,2.52e-10,17;UBERON:0002021,2.85e-08,10;UBERON:0000411,2.85e-08,10;UBERON:0001950,2.85e-08,10 | |||
|phase1_expression=4.64431656603902,0,0,0,0,0.671517087647559,0,1.42035655785734,0.140788722151667,0,1.02730780935303,0.398860794976682,0,0,0,0,0,0.473193248037357,0.274228867211478,0,6.80346321208558,0,0,0.319984845586813,1.83527424853736,0,0.86152399231815,0.646413698057667,0,0.756090389279792,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.251793635951155,0,0.183546752161682,0,4.14247797122848,1.5378032791413,4.86074747685709,2.37976916763116,4.31257693094915,0.335565212115473,0,0,0.514518872071894,0.573066879877513,1.03134418455488,15.9830004079082,19.5726662330652,8.87363964908651,0,0,0,0,0,2.09720077362883,1.53687322128622,14.9313041724208,14.9856591548177,11.567872874326,15.7108041422092,14.3564551618549,13.7189695120749,9.68039257284187,11.0306254393203,51.7544640697127,31.1557104927858,35.329502648936,18.8597391454177,19.8528186617229,18.2319679694866,30.1517638921491,32.0774687718058,31.0180442986925,26.5165726926301,24.0608140550484,22.5543329448614,4.84647637332378,3.32514864469856,0.289864488701678,0,0,0,0,0,3.5111105032938,0.340860645156116,0.519572009205738,0.35333957451034,9.15482228548423,0,0,0,0,0,0,2.05530983494308,1.29468941823586,2.07818994690755,1.73485326766136,2.13125834818499,0.922461989024234,2.71300752994721,2.82212897125692,0.628332956648377,0,0.578397427679647,0,1.61766849947409,0.662524555381181,0,0,33.0842300623048,25.3430515244281,1.27728527604296,0.11981512450592,0,0.254140454146129,40.1438913604925,38.8875512395833,22.9947464366542,38.4151747624931,46.7959286914505,34.9083914860061,38.7756618731941,1.52759045775474,1.61729061793121,2.77995034277042,6.31325567659422,8.32770834961304,11.0353010128067,12.4242869565691,9.79581315932148,11.4301318574231,16.5266699167456,11.9938207436453,20.1788629176432,5.6047678162539,4.16033376369202,2.28736461413134,2.6303487891309,2.50242524303038,2.43776516565517,0.823128545631774,1.39323986772945,0,0,0,0.621377317606506,0.938104239924385,0.720248245844059,0.473489471170421,0.393528463494808,0.617068451549513,0,0.268273401399619,0.583826711835847,0.16455984991348,0.32833492815819,0.162137619091711,0.292399974850665,0.878200461164203,0.402619256281115,40.1653801757483,25.314534645304,0.330418782983798,0.264450566663544,1.91959425481711,2.78684006232526,1.80414445850931,1.61346819698674,1.55664630691409,1.33157938278791,0.949058123089023,0.988193728344065,1.00534083520108,0.596869416123452,0.58489226135736,1.79763881730844,0.216138049874694,0.597423819763102,1.51734320762465,2.62771579002376,3.38123207019241,1.83286195060783,0.581857461502877,1.26244475802573,1.20149420536089,1.03327103585722,0.941992367048249,0.493588655687202,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0.252578877947112,0,0,0.554259570499814,1.51593129416388,0.977789858652155,1.18821560042632,0.469380496577004,0.670025029767263,0.476087281772027,0.195133647857799,0.472905432318573,0.664394068946325,0.478364305972461,0.491589944147214,0.518054945597687,0.578596234326046,0,0,0,1.65562047782839,39.6559957269846,41.1413019938633,6.39346286969034,0.252470927204373,11.9893123378178,9.37052986311932,13.5716740571663,7.40803273652911,8.02075226696619,7.35998980050964,11.7395103485719,9.9366991689846,11.4633455604492,36.3093087556642,1.98716119291576,0.712262414669021,0.977321756121456,1.64970122972535,5.30980553359851,2.91336763385978,2.72091201268276,6.03536255218874,8.56375489354241,10.7602301780375,4.39328098385976,3.63533729477506,2.49548164869305,10.4292130118819,16.8669773719998,5.15677716240934,27.235168460303,8.10274923140896,4.39819524861365,9.43082954139006,10.8177542521787,9.63191615051181,12.176627524557,6.39376393140658,0.938686832254841,0.21183207086382,58.2194970865099,0.16488625294148,0.161464426695906,0.422190474497091,0.119372344003136,0.656563598980245,0.874442509889552,45.0583483885539,0.854354403989263,0.412773735926445,0,0,0.136694227721025,0,1.5298058699447,0.69975726161829,0.414599921413271,1.90934123603023,3.63786392618306,2.23651413839534,1.72808545314882,1.46361807210128,1.74690050996942,1.48350781023303,1.23980183588004,1.30877970992015,0.259229946583586,0.621339313086926,0,0.897099276263873,0.165458490457098,1.36115831840833,2.97067593998782,2.02747350588934,1.05621514781179,0.781226309063701,0.314578033277133,0.724752362478018,0.576060012515731,0,1.01362607645082,0.308132871494482,0.51968329191118,0.537080087002444,0.596044064343795,0.120195449519969,0.147689527174577,0.706765149637033,0.228620419965,0.100826185136841,0,0.288635524920988,0.116876902181569,1.13365191807606,0.443971906748129,0,0,2.31827512838629,6.19352168988901,1.46521299413812,0.643105137237198,27.0848936179096,48.0039066224507,38.2069946300957,52.1334917229851,29.730600545458,30.8287133896789,35.5035131773159,37.8012600129811,34.674732648265,46.2205257163889,48.6694693046711,7.26511433089237,5.98537310101547,7.0000778359195,3.8897074730927,6.49800804146745,3.67687016900028,4.4449345560323,4.94484137373346,6.09746498224449,4.29585259998456,4.30914809813408,4.90428487603798,4.12022632867483,4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| ||
|short_description=p1@Rab39b | |short_description=p1@Rab39b | ||
}} | }} |
Latest revision as of 00:30, 2 October 2015
Short description: | p1@Rab39b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab39b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000033545, NM_175122, uc009tqe.1_5end |
EntrezGene: | Rab39b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.00e-17 | 33 |
neuronal stem cell | 9.00e-17 | 33 |
neuroblast | 9.00e-17 | 33 |
electrically signaling cell | 9.00e-17 | 33 |
ectodermal cell | 3.65e-16 | 44 |
neurectodermal cell | 3.65e-16 | 44 |
neural cell | 8.71e-16 | 43 |
CNS neuron (sensu Vertebrata) | 3.52e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.52e-13 | 23 |
electrically responsive cell | 4.73e-12 | 39 |
electrically active cell | 4.73e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.39e-37 | 75 |
central nervous system | 4.97e-37 | 73 |
ectoderm-derived structure | 5.67e-35 | 95 |
ectoderm | 5.67e-35 | 95 |
presumptive ectoderm | 5.67e-35 | 95 |
neurectoderm | 4.76e-34 | 64 |
neural plate | 4.76e-34 | 64 |
presumptive neural plate | 4.76e-34 | 64 |
regional part of nervous system | 1.68e-29 | 54 |
ecto-epithelium | 1.24e-28 | 73 |
neural tube | 5.38e-28 | 52 |
neural rod | 5.38e-28 | 52 |
future spinal cord | 5.38e-28 | 52 |
neural keel | 5.38e-28 | 52 |
pre-chordal neural plate | 1.82e-26 | 49 |
brain | 6.73e-25 | 47 |
future brain | 6.73e-25 | 47 |
regional part of brain | 3.68e-24 | 46 |
anterior neural tube | 2.69e-22 | 40 |
regional part of forebrain | 1.58e-21 | 39 |
forebrain | 1.58e-21 | 39 |
future forebrain | 1.58e-21 | 39 |
gray matter | 6.55e-20 | 34 |
structure with developmental contribution from neural crest | 4.82e-19 | 92 |
brain grey matter | 3.97e-17 | 29 |
regional part of telencephalon | 3.97e-17 | 29 |
telencephalon | 3.97e-17 | 29 |
cerebral cortex | 2.29e-12 | 21 |
cerebral hemisphere | 2.29e-12 | 21 |
pallium | 2.29e-12 | 21 |
regional part of cerebral cortex | 2.52e-10 | 17 |
occipital lobe | 2.85e-08 | 10 |
visual cortex | 2.85e-08 | 10 |
neocortex | 2.85e-08 | 10 |