FFCP PHASE1:Mm9::chr5:135554184..135554216,-: Difference between revisions
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{{FFCP|EntrezGene=194309|HGNC=|MCL_coexpression_id=22|UniProt=Q810I0|association_with_transcript=-48bp_to_ENSMUST00000067935,ENSMUST00000076203,NM_001199677,NM_177574,uc008zxq.2,uc008zxr.2_5end|description=CAGE_peak_2_at_Vps37d_5end|id=chr5:135554184..135554216,-|ontology_enrichment_celltype=CL:0000117!1.84e-14!23;CL:0000337!1.84e-14!23;CL:0000540!4.10e-13!33;CL:0000047!4.10e-13!33;CL:0000031!4.10e-13!33;CL:0000404!4.10e-13!33;CL:0000221!1.04e-12!44;CL:0000133!1.04e-12!44;CL:0002319!1.64e-12!43;CL:0000393!7.33e-12!39;CL:0000211!7.33e-12!39;CL:0000055!6.87e-11!50;CL:0002321!4.02e-07!70;CL:0000220!4.02e-07!70|ontology_enrichment_celltype_v019_2=CL:0000117,7.08e-17,23;CL:0000337,7.08e-17,23;CL:0000540,1.60e-13,33;CL:0000047,1.60e-13,33;CL:0000031,1.60e-13,33;CL:0000404,1.60e-13,33;CL:0000221,2.63e-13,44;CL:0000133,2.63e-13,44;CL:0002319,4.51e-13,43;CL:0000393,3.29e-12,39;CL:0000211,3.29e-12,39;CL:0002321,9.63e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.93e-24!73;UBERON:0005743!7.93e-24!73;UBERON:0000073!4.33e-22!75;UBERON:0001016!4.33e-22!75;UBERON:0001049!7.71e-19!52;UBERON:0005068!7.71e-19!52;UBERON:0006241!7.71e-19!52;UBERON:0007135!7.71e-19!52;UBERON:0004121!2.53e-18!102;UBERON:0000924!2.53e-18!102;UBERON:0006601!2.53e-18!102;UBERON:0002346!4.90e-18!71;UBERON:0003075!4.90e-18!71;UBERON:0007284!4.90e-18!71;UBERON:0000033!9.57e-18!63;UBERON:0000955!8.36e-17!50;UBERON:0006238!8.36e-17!50;UBERON:0002616!2.59e-16!49;UBERON:0003056!1.73e-15!49;UBERON:0002020!1.67e-14!34;UBERON:0003080!4.28e-14!40;UBERON:0002780!1.46e-13!39;UBERON:0001890!1.46e-13!39;UBERON:0006240!1.46e-13!39;UBERON:0002791!2.49e-11!29;UBERON:0003528!2.49e-11!29;UBERON:0001893!2.49e-11!29;UBERON:0000153!3.90e-11!94;UBERON:0007811!8.49e-10!86;UBERON:0000956!2.04e-07!21;UBERON:0001869!2.04e-07!21;UBERON:0000203!2.04e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.39e-25,73;UBERON:0001016,2.23e-23,75;UBERON:0002346,2.80e-22,64;UBERON:0003075,2.80e-22,64;UBERON:0007284,2.80e-22,64;UBERON:0000073,1.78e-21,54;UBERON:0001049,1.43e-20,52;UBERON:0005068,1.43e-20,52;UBERON:0006241,1.43e-20,52;UBERON:0007135,1.43e-20,52;UBERON:0004121,3.01e-20,95;UBERON:0000924,3.01e-20,95;UBERON:0006601,3.01e-20,95;UBERON:0010371,1.50e-18,73;UBERON:0003056,4.56e-17,49;UBERON:0000955,5.74e-17,47;UBERON:0006238,5.74e-17,47;UBERON:0002616,2.10e-16,46;UBERON:0002020,8.56e-16,34;UBERON:0003080,5.20e-15,40;UBERON:0002780,2.15e-14,39;UBERON:0001890,2.15e-14,39;UBERON:0006240,2.15e-14,39;UBERON:0003528,4.22e-12,29;UBERON:0002791,4.22e-12,29;UBERON:0001893,4.22e-12,29;UBERON:0010314,1.66e-11,92;UBERON:0000956,1.44e-07,21;UBERON:0001869,1.44e-07,21;UBERON:0000203,1.44e-07,21|phase1_expression=4.32401887182944,1.04692622291808,0.909998478779072,2.41971369045464,1.00179145989269,0.671517087647559,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,1.10556277196391,0,0,0.319984845586813,0.22940928106717,0,0.430761996159075,0.430942465371778,0.570070258369122,0.756090389279792,0.221730510655305,0,0,0,0.288851619751275,0.831173226792462,0.204169356262369,0,0,0,0,0,0,1.25896817975577,1.21652317463417,0.734187008646726,3.12956537739216,1.30815093828268,1.09843091367236,0.777719596297134,1.1198913730029,4.31257693094915,0.167782606057736,0.725362142011344,0,0,1.43266719969378,2.06268836910977,11.7343547298567,6.34789175126439,12.0427966666174,1.0165335962074,1.77858959222228,0,0,0,1.79760066311043,4.61061966385865,5.91030790158323,7.02030879324791,8.83364837675805,6.85562362569129,5.74258206474195,7.10446635446733,4.60058260887535,2.75765635983006,2.20231761998777,2.68143409978894,2.91852413186863,8.70449499019279,9.05727671663856,8.85552729946492,3.62937898701795,3.93933827022176,3.0559649555362,10.3120004915784,5.41012387036591,8.94717339961443,0.075726193333184,0,0.869593466105033,0,0,0,0,0,0.140444420131752,0.852151612890289,0.779358013808606,1.41335829804136,1.97180787687353,1.28326477414318,5.09610479413291,7.11066703153331,0,0,0,0.45673551887624,0,0.593768556259299,0.867426633830679,0,0.691846491768175,1.50722640552623,0.940709657085638,0.753999547978053,0.247194967734374,0,0,0.323533699894818,0.441683036920787,0.484875253135222,0,1.17112318804619,2.30391377494801,0.510914110417183,0.11981512450592,0,0,3.74476598512057,1.37250180845588,8.29318723944905,4.51943232499919,4.34716277461562,1.24672826735736,3.56930778749067,3.7680564624617,1.24406970610093,0.505445516867349,0,2.34216797332867,2.98872735763515,3.60124259610698,2.10986744970001,2.9255694635071,2.3060469651273,2.34254311399322,1.03481348295606,2.80238390812695,3.21480336285293,3.34307135911503,3.5071317188412,2.50242524303038,1.74126083261083,0.61734640922383,2.18937693500343,0,0,0,0,0.234526059981096,0.180062061461015,0.473489471170421,0.393528463494808,0.925602677324269,0.232533944750408,0.268273401399619,0.934122738937356,0.16455984991348,0.656669856316381,0.648550476366846,0.146199987425332,0,0.268412837520744,2.3131894342054,7.61494131606705,0.99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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=194309 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q810I0 | |||
|association_with_transcript=-48bp_to_ENSMUST00000067935,ENSMUST00000076203,NM_001199677,NM_177574,uc008zxq.2,uc008zxr.2_5end | |||
|cluster_id=chr5:135554184..135554216,- | |||
|description=CAGE_peak_2_at_Vps37d_5end | |||
|id=chr5:135554184..135554216,- | |||
|ontology_enrichment_celltype=CL:0000117!1.84e-14!23;CL:0000337!1.84e-14!23;CL:0000540!4.10e-13!33;CL:0000047!4.10e-13!33;CL:0000031!4.10e-13!33;CL:0000404!4.10e-13!33;CL:0000221!1.04e-12!44;CL:0000133!1.04e-12!44;CL:0002319!1.64e-12!43;CL:0000393!7.33e-12!39;CL:0000211!7.33e-12!39;CL:0000055!6.87e-11!50;CL:0002321!4.02e-07!70;CL:0000220!4.02e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.08e-17,23;CL:0000337,7.08e-17,23;CL:0000540,1.60e-13,33;CL:0000047,1.60e-13,33;CL:0000031,1.60e-13,33;CL:0000404,1.60e-13,33;CL:0000221,2.63e-13,44;CL:0000133,2.63e-13,44;CL:0002319,4.51e-13,43;CL:0000393,3.29e-12,39;CL:0000211,3.29e-12,39;CL:0002321,9.63e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.93e-24!73;UBERON:0005743!7.93e-24!73;UBERON:0000073!4.33e-22!75;UBERON:0001016!4.33e-22!75;UBERON:0001049!7.71e-19!52;UBERON:0005068!7.71e-19!52;UBERON:0006241!7.71e-19!52;UBERON:0007135!7.71e-19!52;UBERON:0004121!2.53e-18!102;UBERON:0000924!2.53e-18!102;UBERON:0006601!2.53e-18!102;UBERON:0002346!4.90e-18!71;UBERON:0003075!4.90e-18!71;UBERON:0007284!4.90e-18!71;UBERON:0000033!9.57e-18!63;UBERON:0000955!8.36e-17!50;UBERON:0006238!8.36e-17!50;UBERON:0002616!2.59e-16!49;UBERON:0003056!1.73e-15!49;UBERON:0002020!1.67e-14!34;UBERON:0003080!4.28e-14!40;UBERON:0002780!1.46e-13!39;UBERON:0001890!1.46e-13!39;UBERON:0006240!1.46e-13!39;UBERON:0002791!2.49e-11!29;UBERON:0003528!2.49e-11!29;UBERON:0001893!2.49e-11!29;UBERON:0000153!3.90e-11!94;UBERON:0007811!8.49e-10!86;UBERON:0000956!2.04e-07!21;UBERON:0001869!2.04e-07!21;UBERON:0000203!2.04e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.39e-25,73;UBERON:0001016,2.23e-23,75;UBERON:0002346,2.80e-22,64;UBERON:0003075,2.80e-22,64;UBERON:0007284,2.80e-22,64;UBERON:0000073,1.78e-21,54;UBERON:0001049,1.43e-20,52;UBERON:0005068,1.43e-20,52;UBERON:0006241,1.43e-20,52;UBERON:0007135,1.43e-20,52;UBERON:0004121,3.01e-20,95;UBERON:0000924,3.01e-20,95;UBERON:0006601,3.01e-20,95;UBERON:0010371,1.50e-18,73;UBERON:0003056,4.56e-17,49;UBERON:0000955,5.74e-17,47;UBERON:0006238,5.74e-17,47;UBERON:0002616,2.10e-16,46;UBERON:0002020,8.56e-16,34;UBERON:0003080,5.20e-15,40;UBERON:0002780,2.15e-14,39;UBERON:0001890,2.15e-14,39;UBERON:0006240,2.15e-14,39;UBERON:0003528,4.22e-12,29;UBERON:0002791,4.22e-12,29;UBERON:0001893,4.22e-12,29;UBERON:0010314,1.66e-11,92;UBERON:0000956,1.44e-07,21;UBERON:0001869,1.44e-07,21;UBERON:0000203,1.44e-07,21 | |||
|phase1_expression=4.32401887182944,1.04692622291808,0.909998478779072,2.41971369045464,1.00179145989269,0.671517087647559,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,1.10556277196391,0,0,0.319984845586813,0.22940928106717,0,0.430761996159075,0.430942465371778,0.570070258369122,0.756090389279792,0.221730510655305,0,0,0,0.288851619751275,0.831173226792462,0.204169356262369,0,0,0,0,0,0,1.25896817975577,1.21652317463417,0.734187008646726,3.12956537739216,1.30815093828268,1.09843091367236,0.777719596297134,1.1198913730029,4.31257693094915,0.167782606057736,0.725362142011344,0,0,1.43266719969378,2.06268836910977,11.7343547298567,6.34789175126439,12.0427966666174,1.0165335962074,1.77858959222228,0,0,0,1.79760066311043,4.61061966385865,5.91030790158323,7.02030879324791,8.83364837675805,6.85562362569129,5.74258206474195,7.10446635446733,4.60058260887535,2.75765635983006,2.20231761998777,2.68143409978894,2.91852413186863,8.70449499019279,9.05727671663856,8.85552729946492,3.62937898701795,3.93933827022176,3.0559649555362,10.3120004915784,5.41012387036591,8.94717339961443,0.075726193333184,0,0.869593466105033,0,0,0,0,0,0.140444420131752,0.852151612890289,0.779358013808606,1.41335829804136,1.97180787687353,1.28326477414318,5.09610479413291,7.11066703153331,0,0,0,0.45673551887624,0,0.593768556259299,0.867426633830679,0,0.691846491768175,1.50722640552623,0.940709657085638,0.753999547978053,0.247194967734374,0,0,0.323533699894818,0.441683036920787,0.484875253135222,0,1.17112318804619,2.30391377494801,0.510914110417183,0.11981512450592,0,0,3.74476598512057,1.37250180845588,8.29318723944905,4.51943232499919,4.34716277461562,1.24672826735736,3.56930778749067,3.7680564624617,1.24406970610093,0.505445516867349,0,2.34216797332867,2.98872735763515,3.60124259610698,2.10986744970001,2.9255694635071,2.3060469651273,2.34254311399322,1.03481348295606,2.80238390812695,3.21480336285293,3.34307135911503,3.5071317188412,2.50242524303038,1.74126083261083,0.61734640922383,2.18937693500343,0,0,0,0,0.234526059981096,0.180062061461015,0.473489471170421,0.393528463494808,0.925602677324269,0.232533944750408,0.268273401399619,0.934122738937356,0.16455984991348,0.656669856316381,0.648550476366846,0.146199987425332,0,0.268412837520744,2.3131894342054,7.61494131606705,0.991256348951394,0.264450566663544,1.49301775374664,1.16118335930219,0.644337306610467,0.201683524623343,0.667134131534611,0.760902504450237,0.949058123089023,0.164698954724011,0.754005626400808,1.1937388322469,0.58489226135736,0,0.216138049874694,0.398282546508734,2.0863469104839,2.85621281524322,0,2.44381593414377,2.32742984601151,2.87556861550306,1.7706230394792,1.62371162777562,1.09899109488962,2.46794327843601,0,0,0.196558995113203,0,0,0.241177159752417,0.25462585178142,0,0,0.549122826376163,0,0.744281895337007,0.312037673114561,0.505157755894224,0,0,0.184753190166605,1.51593129416388,0.814824882210129,1.18821560042632,1.64283173801951,0.335012514883631,1.6663054862021,0.975668239288994,1.26108115284953,0,0.478364305972461,0.327726629431476,0.518054945597687,0.144649058581512,0,0,0,0,2.24770825982909,2.22702204525186,0.819674726883377,0.504941854408746,1.57754109708128,1.56175497718655,0.430846795465598,0.955875191810208,0.668396022247182,1.13230612315533,1.21443210502468,0.876767573733936,2.76701444562566,3.21321316421807,1.56134093729095,2.67098405500883,5.04949573996086,1.31976098378028,0,0.971122544619926,0.604647113929502,1.50884063804718,1.18120757152309,0.614870295887855,1.80899805217755,2.18120237686503,0.356497378384721,0,0,0,0.680879211507576,1.62054984628179,1.55230420539305,3.64372959553707,3.01478397191865,1.78368817602071,3.29098041204242,3.34911444026059,0,0.21183207086382,0,0.65954501176592,0.807322133479528,0.72375509913787,0.596861720015682,0.656563598980245,0.582961673259701,2.41052892613663,0.170870880797853,1.03193433981611,1.11116716421827,0.188368457004691,0.136694227721025,0,0,0,0,0,3.47969592939249,1.62655573701479,1.40406943068342,0.209088296014469,0.436725127492355,0.404593039154462,0.743881101528023,0.523511883968059,0.777689839750757,0,0,0.897099276263873,2.31641886639937,1.36115831840833,2.84151611651008,3.04121025883401,3.40335992072686,2.99470085141085,1.8874681996628,0.241584120826006,0.288030006257865,0,1.41907650703115,1.02710957164827,0.51968329191118,0.537080087002444,0.79472541912506,0.360586348559907,0.147689527174577,0.100966449948148,0.0762068066549998,0.100826185136841,0.194915761479505,0.0962118416403295,0.467507608726276,0.453460767230423,0.665957860122194,0.269141569828427,0.335769232728157,0,0.563047426353546,0.915758121336325,0.214368379079066,0.501572104035363,2.82375921308533,0.920650473014354,2.29158205375759,2.57779773515531,1.37016503954128,2.2661816921691,1.35004500046361,4.95353323546643,2.71885445390523,2.07104124700728,2.17953429926771,3.99024873401031,2.56100408631201,1.45864030240976,3.14419743941973,2.94149613520023,0.44449345560323,0.824140228955577,1.60459604795908,1.51618327058278,1.52087579934144,1.69763707247469,1.2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| |||
|short_description=p2@Vps37d | |||
}} |
Latest revision as of 00:08, 2 October 2015
Short description: | p2@Vps37d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Vps37d_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -48bp_to_ENSMUST00000067935, ENSMUST00000076203, NM_001199677, NM_177574, uc008zxq.2, uc008zxr.2_5end |
EntrezGene: | Vps37d |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.08e-17 | 23 |
neuroblast (sensu Vertebrata) | 7.08e-17 | 23 |
neuron | 1.60e-13 | 33 |
neuronal stem cell | 1.60e-13 | 33 |
neuroblast | 1.60e-13 | 33 |
electrically signaling cell | 1.60e-13 | 33 |
ectodermal cell | 2.63e-13 | 44 |
neurectodermal cell | 2.63e-13 | 44 |
neural cell | 4.51e-13 | 43 |
electrically responsive cell | 3.29e-12 | 39 |
electrically active cell | 3.29e-12 | 39 |
embryonic cell | 9.63e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.39e-25 | 73 |
nervous system | 2.23e-23 | 75 |
neurectoderm | 2.80e-22 | 64 |
neural plate | 2.80e-22 | 64 |
presumptive neural plate | 2.80e-22 | 64 |
regional part of nervous system | 1.78e-21 | 54 |
neural tube | 1.43e-20 | 52 |
neural rod | 1.43e-20 | 52 |
future spinal cord | 1.43e-20 | 52 |
neural keel | 1.43e-20 | 52 |
ectoderm-derived structure | 3.01e-20 | 95 |
ectoderm | 3.01e-20 | 95 |
presumptive ectoderm | 3.01e-20 | 95 |
ecto-epithelium | 1.50e-18 | 73 |
pre-chordal neural plate | 4.56e-17 | 49 |
brain | 5.74e-17 | 47 |
future brain | 5.74e-17 | 47 |
regional part of brain | 2.10e-16 | 46 |
gray matter | 8.56e-16 | 34 |
anterior neural tube | 5.20e-15 | 40 |
regional part of forebrain | 2.15e-14 | 39 |
forebrain | 2.15e-14 | 39 |
future forebrain | 2.15e-14 | 39 |
brain grey matter | 4.22e-12 | 29 |
regional part of telencephalon | 4.22e-12 | 29 |
telencephalon | 4.22e-12 | 29 |
structure with developmental contribution from neural crest | 1.66e-11 | 92 |
cerebral cortex | 1.44e-07 | 21 |
cerebral hemisphere | 1.44e-07 | 21 |
pallium | 1.44e-07 | 21 |