FFCP PHASE1:Mm9::chr16:34573612..34573640,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr16:34573612..34573640,- to FFCP PHASE1:Mm9::chr16:34573612..34573640,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=545156 | |EntrezGene=545156 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=A2CG49 | |UniProt=A2CG49 | ||
|association_with_transcript=0bp_to_ENSMUST00000114961_5end | |||
|cluster_id=chr16:34573612..34573640,- | |||
|description=CAGE_peak_2_at_Kalrn_5end | |||
|id=chr16:34573612..34573640,- | |||
|ontology_enrichment_celltype=CL:0000393!2.96e-16!39;CL:0000211!2.96e-16!39;CL:0000540!1.39e-15!33;CL:0000047!1.39e-15!33;CL:0000031!1.39e-15!33;CL:0000404!1.39e-15!33;CL:0000117!1.49e-11!23;CL:0000337!1.49e-11!23;CL:0000055!7.48e-09!50;CL:0002319!3.86e-08!43;CL:0000221!4.62e-08!44;CL:0000133!4.62e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.42e-16,39;CL:0000211,1.42e-16,39;CL:0000540,6.87e-16,33;CL:0000047,6.87e-16,33;CL:0000031,6.87e-16,33;CL:0000404,6.87e-16,33;CL:0000117,9.05e-12,23;CL:0000337,9.05e-12,23;CL:0002319,8.34e-08,43;CL:0000221,9.84e-08,44;CL:0000133,9.84e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.51e-17!73;UBERON:0005743!1.51e-17!73;UBERON:0000073!2.96e-16!75;UBERON:0001016!2.96e-16!75;UBERON:0002020!9.71e-16!34;UBERON:0003056!4.00e-15!49;UBERON:0004121!1.40e-14!102;UBERON:0000924!1.40e-14!102;UBERON:0006601!1.40e-14!102;UBERON:0002346!3.50e-14!71;UBERON:0003075!3.50e-14!71;UBERON:0007284!3.50e-14!71;UBERON:0002780!8.14e-14!39;UBERON:0001890!8.14e-14!39;UBERON:0006240!8.14e-14!39;UBERON:0000033!9.61e-14!63;UBERON:0003080!1.10e-13!40;UBERON:0002791!1.28e-13!29;UBERON:0003528!1.28e-13!29;UBERON:0001893!1.28e-13!29;UBERON:0000955!7.43e-13!50;UBERON:0006238!7.43e-13!50;UBERON:0001049!8.10e-13!52;UBERON:0005068!8.10e-13!52;UBERON:0006241!8.10e-13!52;UBERON:0007135!8.10e-13!52;UBERON:0002616!2.29e-12!49;UBERON:0000956!3.43e-11!21;UBERON:0001869!3.43e-11!21;UBERON:0000203!3.43e-11!21;UBERON:0000468!3.93e-10!333;UBERON:0002619!9.30e-09!17;UBERON:0000922!3.44e-08!328;UBERON:0002021!3.82e-08!10;UBERON:0000411!3.82e-08!10;UBERON:0001950!3.82e-08!10;UBERON:0000153!2.41e-07!94;UBERON:0000479!2.87e-07!349;UBERON:0007811!5.88e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.19e-17,73;UBERON:0001016,6.30e-16,75;UBERON:0002020,1.43e-15,34;UBERON:0002346,3.26e-15,64;UBERON:0003075,3.26e-15,64;UBERON:0007284,3.26e-15,64;UBERON:0004121,6.76e-15,95;UBERON:0000924,6.76e-15,95;UBERON:0006601,6.76e-15,95;UBERON:0003056,1.50e-14,49;UBERON:0000073,3.17e-14,54;UBERON:0010371,6.26e-14,73;UBERON:0002780,1.45e-13,39;UBERON:0001890,1.45e-13,39;UBERON:0006240,1.45e-13,39;UBERON:0003080,1.94e-13,40;UBERON:0003528,2.08e-13,29;UBERON:0002791,2.08e-13,29;UBERON:0001893,2.08e-13,29;UBERON:0001049,1.42e-12,52;UBERON:0005068,1.42e-12,52;UBERON:0006241,1.42e-12,52;UBERON:0007135,1.42e-12,52;UBERON:0010314,2.66e-12,92;UBERON:0000955,2.48e-11,47;UBERON:0006238,2.48e-11,47;UBERON:0000956,6.56e-11,21;UBERON:0001869,6.56e-11,21;UBERON:0000203,6.56e-11,21;UBERON:0002616,7.48e-11,46;UBERON:0002619,1.91e-08,17;UBERON:0002021,2.75e-08,10;UBERON:0000411,2.75e-08,10;UBERON:0001950,2.75e-08,10 | |||
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| ||
|short_description=p2@Kalrn | |||
}} | }} |
Latest revision as of 22:22, 1 October 2015
Short description: | p2@Kalrn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Kalrn_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000114961_5end |
EntrezGene: | Kalrn |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.42e-16 | 39 |
electrically active cell | 1.42e-16 | 39 |
neuron | 6.87e-16 | 33 |
neuronal stem cell | 6.87e-16 | 33 |
neuroblast | 6.87e-16 | 33 |
electrically signaling cell | 6.87e-16 | 33 |
CNS neuron (sensu Vertebrata) | 9.05e-12 | 23 |
neuroblast (sensu Vertebrata) | 9.05e-12 | 23 |
neural cell | 8.34e-08 | 43 |
ectodermal cell | 9.84e-08 | 44 |
neurectodermal cell | 9.84e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.19e-17 | 73 |
nervous system | 6.30e-16 | 75 |
gray matter | 1.43e-15 | 34 |
neurectoderm | 3.26e-15 | 64 |
neural plate | 3.26e-15 | 64 |
presumptive neural plate | 3.26e-15 | 64 |
ectoderm-derived structure | 6.76e-15 | 95 |
ectoderm | 6.76e-15 | 95 |
presumptive ectoderm | 6.76e-15 | 95 |
pre-chordal neural plate | 1.50e-14 | 49 |
regional part of nervous system | 3.17e-14 | 54 |
ecto-epithelium | 6.26e-14 | 73 |
regional part of forebrain | 1.45e-13 | 39 |
forebrain | 1.45e-13 | 39 |
future forebrain | 1.45e-13 | 39 |
anterior neural tube | 1.94e-13 | 40 |
brain grey matter | 2.08e-13 | 29 |
regional part of telencephalon | 2.08e-13 | 29 |
telencephalon | 2.08e-13 | 29 |
neural tube | 1.42e-12 | 52 |
neural rod | 1.42e-12 | 52 |
future spinal cord | 1.42e-12 | 52 |
neural keel | 1.42e-12 | 52 |
structure with developmental contribution from neural crest | 2.66e-12 | 92 |
brain | 2.48e-11 | 47 |
future brain | 2.48e-11 | 47 |
cerebral cortex | 6.56e-11 | 21 |
cerebral hemisphere | 6.56e-11 | 21 |
pallium | 6.56e-11 | 21 |
regional part of brain | 7.48e-11 | 46 |
regional part of cerebral cortex | 1.91e-08 | 17 |
occipital lobe | 2.75e-08 | 10 |
visual cortex | 2.75e-08 | 10 |
neocortex | 2.75e-08 | 10 |