FFCP PHASE1:Mm9::chr3:28162318..28162335,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=665113|HGNC=|MCL_coexpression_id=2|UniProt=|association_with_transcript=120bp_to_ENSMUST00000161214,ENSMUST00000161234_5end|description=CAGE_peak_3_at_Tnik_5end|id=chr3:28162318..28162335,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000791,2.01e-07,9;CL:0000789,2.01e-07,9;CL:0002420,2.01e-07,9;CL:0002419,2.01e-07,9;CL:0000790,2.01e-07,9;CL:0000624,8.63e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!2.52e-14!86;UBERON:0000073!4.66e-14!75;UBERON:0001016!4.66e-14!75;UBERON:0001017!2.92e-13!73;UBERON:0005743!2.92e-13!73;UBERON:0001049!1.34e-12!52;UBERON:0005068!1.34e-12!52;UBERON:0006241!1.34e-12!52;UBERON:0007135!1.34e-12!52;UBERON:0000955!1.50e-12!50;UBERON:0006238!1.50e-12!50;UBERON:0004121!4.79e-12!102;UBERON:0000924!4.79e-12!102;UBERON:0006601!4.79e-12!102;UBERON:0002616!6.28e-12!49;UBERON:0000153!6.60e-12!94;UBERON:0000064!4.73e-11!99;UBERON:0002020!4.91e-11!34;UBERON:0003080!1.36e-10!40;UBERON:0000033!1.56e-10!63;UBERON:0002780!3.94e-10!39;UBERON:0001890!3.94e-10!39;UBERON:0006240!3.94e-10!39;UBERON:0002791!1.77e-09!29;UBERON:0003528!1.77e-09!29;UBERON:0001893!1.77e-09!29;UBERON:0002346!2.46e-09!71;UBERON:0003075!2.46e-09!71;UBERON:0007284!2.46e-09!71;UBERON:0003056!5.73e-09!49;UBERON:0002021!4.47e-08!10;UBERON:0000411!4.47e-08!10;UBERON:0001950!4.47e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.32e-14,75;UBERON:0000073,3.37e-14,54;UBERON:0001017,1.87e-13,73;UBERON:0004121,2.40e-13,95;UBERON:0000924,2.40e-13,95;UBERON:0006601,2.40e-13,95;UBERON:0001049,4.40e-13,52;UBERON:0005068,4.40e-13,52;UBERON:0006241,4.40e-13,52;UBERON:0007135,4.40e-13,52;UBERON:0010371,1.73e-11,73;UBERON:0000955,2.13e-11,47;UBERON:0006238,2.13e-11,47;UBERON:0002020,7.75e-11,34;UBERON:0002616,1.02e-10,46;UBERON:0002346,3.55e-10,64;UBERON:0003075,3.55e-10,64;UBERON:0007284,3.55e-10,64;UBERON:0003080,4.97e-10,40;UBERON:0002780,1.63e-09,39;UBERON:0001890,1.63e-09,39;UBERON:0006240,1.63e-09,39;UBERON:0002021,2.13e-09,10;UBERON:0000411,2.13e-09,10;UBERON:0001950,2.13e-09,10;UBERON:0003528,5.12e-09,29;UBERON:0002791,5.12e-09,29;UBERON:0001893,5.12e-09,29;UBERON:0003056,1.59e-07,49|phase1_expression=0.640595388419176,1.04692622291808,0.909998478779072,1.51232105653415,1.50268718983904,1.6787927191189,1.40167584357315,19.497621839678,17.73937899111,22.2361300005894,8.73211637950075,6.86040567359893,12.1552518251156,11.8017543265646,0.333109761815663,0.607425802169478,0,2.5236973228659,3.56497527374921,2.54633791078818,8.33424243480484,0,0,0.799962113967033,1.14704640533585,0,0.430761996159075,0.861884930743556,0.380046838912748,0.756090389279792,0.443461021310609,5.08024538767705,7.38077745101484,0,0.288851619751275,0,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.58328969722285,0,0,1.67782606057736,15.9579671242496,9.74672017513146,1.54355661621568,0.85960031981627,0.515672092277442,1.41621522601718,0.528990979272033,0.633831403506179,0,0,0,0,0,0.898800331555214,1.15265491596466,1.45165457231869,0.945041568321835,1.05162480675691,5.99867067247988,2.65042249141936,0.734944795289724,0.862609239164127,0.919218786610021,4.40463523997555,11.7472351038373,9.98442466165583,1.58263545276233,1.37231465403614,2.6045668527838,4.74611098302348,7.87867654044352,6.87592114995646,2.94628585473668,2.56269025438385,2.05039390407831,5.60373830665562,5.06329452715463,0.869593466105033,0.860423876981386,0,0,0,0,1.12355536105401,0,0,0,4.3661460130771,0,0,0,0.865964164044856,0.253359865475099,0.505524445014783,1.02765491747154,3.88406825470758,0.593768556259299,0.520455980298408,0.304465478312141,0.691846491768175,0.150722640552623,2.23418543557839,0.376999773989026,0,0.289198713839823,0,1.29413479957927,1.76673214768315,1.45462575940567,0,6.14839673724249,5.65506108396329,1.02182822083437,0.359445373517761,0,0.635351135365324,8.23848516726525,34.7700458142156,9.1727677042391,20.8589184230732,36.3115949409069,10.389402227978,19.4689515681309,0.101839363850316,0.995255764880744,1.76905930903572,1.05220927943237,0.260240885925407,0.689706313300419,0.180062129805349,0.90422890701429,1.7009124787832,0.896796041993948,0.468508622798644,1.29351685369508,0,0.567318240503458,0.527853372491847,0,0.278047249225598,0,0.823128545631774,1.39323986772945,0,0,0,0.621377317606506,0.469052119962192,0.180062061461015,0.23674473558521,0.983821158737019,0.308534225774757,0.465067889500816,0,1.05088808130453,0.658239399653922,0.492502392237286,0.405344047729279,0.730999937126662,0.658650345873152,0.671032093801859,21.449574753541,4.52780294468852,1.65209391491899,0.793351699990633,0.213288250535234,0.232236671860439,0.257734922644187,0.605050573870028,0.22237804384487,0,0.474529061544512,0.658795818896044,0,0,0.58489226135736,0.898819408654221,0.432276099749388,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0.193952487167626,0.631222379012867,0.0632365371242573,0,0,0,0.296452627087149,0,0.196558995113203,0,0,0.241177159752417,0.763877555344259,0,0.324270453550071,0.274561413188081,0,0,0,0,0.179397413521912,0,1.10851914099963,0.189491411770485,0.325929952884052,0.848725428875941,0.234690248288502,0.837531287209079,0.476087281772027,1.17080188714679,0.472905432318573,0.44292937929755,0.478364305972461,1.3109065177259,1.55416483679306,1.15719246865209,0,0,0,0.551873492609465,4.81651769963376,5.86058432961016,0.163934945376675,1.76729649043061,0.315508219416257,1.17131623288992,1.29254038639679,3.34556317133573,5.34716817797746,6.79383673893198,0.404810701674894,2.04579100537918,1.58115111178609,41.7717711348349,1.27746076687442,1.06839362200353,0.977321756121456,0.659880491890142,0,1.45668381692989,0,0.377210159511796,0.295301892880773,0.614870295887855,0,1.45413491791002,0.356497378384721,0,0,1.03135543248187,7.14923172082955,0.540183282093931,0.258717367565509,0.643011105094777,1.06404140185364,1.24858172321449,1.81003922662333,2.43571959291679,0.23467170806371,0,0.661585194164886,8.90385765883992,4.03661066739764,4.1012788951146,6.68485126417564,9.02774948597837,0,7.23158677840988,0.854354403989263,0.82554747185289,0.925972636848558,1.13021074202815,0.820165366326151,0.457556346413045,1.5298058699447,1.11961161858926,1.52019971184866,0,0.316335993581135,0.813277868507395,0.216010681643603,0.418176592028937,0.218362563746178,0.404593039154462,0.743881101528023,1.04702376793612,0.388844919875379,0,3.94585057078933,2.39226473670366,2.48187735685646,1.55560950675238,1.16243841129958,1.520605129417,2.22978753426933,7.55185432094911,13.3171367420653,8.45544422891021,8.06484017522023,6.95224465381992,0,0.205421914329655,0.649604114888975,1.43221356533985,3.57626438606277,4.44723163223885,3.10148007066612,5.04832249740738,2.89585865288999,6.957006774442,9.55087231249574,10.3908788971556,9.11639837016238,1.36038230169127,0,0,0,0.965947970160952,0.93841237725591,0.549454872801795,0.428736758158132,1.00314420807073,35.0146142422581,39.12764510311,40.6755814541972,26.4653900809279,29.4585483501376,33.2373314851468,24.300810008345,31.5224842256954,22.203978040226,34.6899408873719,0.518936737920883,1.99512436700516,1.36586884603307,0,0.628839487883947,0.735374033800057,2.44471400581777,2.26638562962784,1.60459604795908,1.51618327058278,1.01391719956096,1.13175804831646,0.936415074698824,2.11283002936069,1.66562859971278,0,2.0859178670074,0.964546102318525,0.824171801606613,1.32479028120958,1.02860775715625,0.887379030796687,1.1921809497366,1.16277133305863,1.2234219453993,1.4384483341585,1.28049581010941,1.05227884575137,1.08643291076689,1.68342681497322,0.949080144993393,1.67457620038458,2.04615521584845,1.70430525304563,1.73615949883027,1.49886346762768,0.467863216890817,1.93383948643468,1.14772999241306,1.32354851471709,0.463735671240843|short_description=p3@Tnik}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=665113 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=120bp_to_ENSMUST00000161214,ENSMUST00000161234_5end | |||
|cluster_id=chr3:28162318..28162335,+ | |||
|description=CAGE_peak_3_at_Tnik_5end | |||
|id=chr3:28162318..28162335,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.01e-07,9;CL:0000789,2.01e-07,9;CL:0002420,2.01e-07,9;CL:0002419,2.01e-07,9;CL:0000790,2.01e-07,9;CL:0000624,8.63e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!2.52e-14!86;UBERON:0000073!4.66e-14!75;UBERON:0001016!4.66e-14!75;UBERON:0001017!2.92e-13!73;UBERON:0005743!2.92e-13!73;UBERON:0001049!1.34e-12!52;UBERON:0005068!1.34e-12!52;UBERON:0006241!1.34e-12!52;UBERON:0007135!1.34e-12!52;UBERON:0000955!1.50e-12!50;UBERON:0006238!1.50e-12!50;UBERON:0004121!4.79e-12!102;UBERON:0000924!4.79e-12!102;UBERON:0006601!4.79e-12!102;UBERON:0002616!6.28e-12!49;UBERON:0000153!6.60e-12!94;UBERON:0000064!4.73e-11!99;UBERON:0002020!4.91e-11!34;UBERON:0003080!1.36e-10!40;UBERON:0000033!1.56e-10!63;UBERON:0002780!3.94e-10!39;UBERON:0001890!3.94e-10!39;UBERON:0006240!3.94e-10!39;UBERON:0002791!1.77e-09!29;UBERON:0003528!1.77e-09!29;UBERON:0001893!1.77e-09!29;UBERON:0002346!2.46e-09!71;UBERON:0003075!2.46e-09!71;UBERON:0007284!2.46e-09!71;UBERON:0003056!5.73e-09!49;UBERON:0002021!4.47e-08!10;UBERON:0000411!4.47e-08!10;UBERON:0001950!4.47e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.32e-14,75;UBERON:0000073,3.37e-14,54;UBERON:0001017,1.87e-13,73;UBERON:0004121,2.40e-13,95;UBERON:0000924,2.40e-13,95;UBERON:0006601,2.40e-13,95;UBERON:0001049,4.40e-13,52;UBERON:0005068,4.40e-13,52;UBERON:0006241,4.40e-13,52;UBERON:0007135,4.40e-13,52;UBERON:0010371,1.73e-11,73;UBERON:0000955,2.13e-11,47;UBERON:0006238,2.13e-11,47;UBERON:0002020,7.75e-11,34;UBERON:0002616,1.02e-10,46;UBERON:0002346,3.55e-10,64;UBERON:0003075,3.55e-10,64;UBERON:0007284,3.55e-10,64;UBERON:0003080,4.97e-10,40;UBERON:0002780,1.63e-09,39;UBERON:0001890,1.63e-09,39;UBERON:0006240,1.63e-09,39;UBERON:0002021,2.13e-09,10;UBERON:0000411,2.13e-09,10;UBERON:0001950,2.13e-09,10;UBERON:0003528,5.12e-09,29;UBERON:0002791,5.12e-09,29;UBERON:0001893,5.12e-09,29;UBERON:0003056,1.59e-07,49 | |||
|phase1_expression=0.640595388419176,1.04692622291808,0.909998478779072,1.51232105653415,1.50268718983904,1.6787927191189,1.40167584357315,19.497621839678,17.73937899111,22.2361300005894,8.73211637950075,6.86040567359893,12.1552518251156,11.8017543265646,0.333109761815663,0.607425802169478,0,2.5236973228659,3.56497527374921,2.54633791078818,8.33424243480484,0,0,0.799962113967033,1.14704640533585,0,0.430761996159075,0.861884930743556,0.380046838912748,0.756090389279792,0.443461021310609,5.08024538767705,7.38077745101484,0,0.288851619751275,0,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.58328969722285,0,0,1.67782606057736,15.9579671242496,9.74672017513146,1.54355661621568,0.85960031981627,0.515672092277442,1.41621522601718,0.528990979272033,0.633831403506179,0,0,0,0,0,0.898800331555214,1.15265491596466,1.45165457231869,0.945041568321835,1.05162480675691,5.99867067247988,2.65042249141936,0.734944795289724,0.862609239164127,0.919218786610021,4.40463523997555,11.7472351038373,9.98442466165583,1.58263545276233,1.37231465403614,2.6045668527838,4.74611098302348,7.87867654044352,6.87592114995646,2.94628585473668,2.56269025438385,2.05039390407831,5.60373830665562,5.06329452715463,0.869593466105033,0.860423876981386,0,0,0,0,1.12355536105401,0,0,0,4.3661460130771,0,0,0,0.865964164044856,0.253359865475099,0.505524445014783,1.02765491747154,3.88406825470758,0.593768556259299,0.520455980298408,0.304465478312141,0.691846491768175,0.150722640552623,2.23418543557839,0.376999773989026,0,0.289198713839823,0,1.29413479957927,1.76673214768315,1.45462575940567,0,6.14839673724249,5.65506108396329,1.02182822083437,0.359445373517761,0,0.635351135365324,8.23848516726525,34.7700458142156,9.1727677042391,20.8589184230732,36.3115949409069,10.389402227978,19.4689515681309,0.101839363850316,0.995255764880744,1.76905930903572,1.05220927943237,0.260240885925407,0.689706313300419,0.180062129805349,0.90422890701429,1.7009124787832,0.896796041993948,0.468508622798644,1.29351685369508,0,0.567318240503458,0.527853372491847,0,0.278047249225598,0,0.823128545631774,1.39323986772945,0,0,0,0.621377317606506,0.469052119962192,0.180062061461015,0.23674473558521,0.983821158737019,0.308534225774757,0.465067889500816,0,1.05088808130453,0.658239399653922,0.492502392237286,0.405344047729279,0.730999937126662,0.658650345873152,0.671032093801859,21.449574753541,4.52780294468852,1.65209391491899,0.793351699990633,0.213288250535234,0.232236671860439,0.257734922644187,0.605050573870028,0.22237804384487,0,0.474529061544512,0.658795818896044,0,0,0.58489226135736,0.898819408654221,0.432276099749388,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0.193952487167626,0.631222379012867,0.0632365371242573,0,0,0,0.296452627087149,0,0.196558995113203,0,0,0.241177159752417,0.763877555344259,0,0.324270453550071,0.274561413188081,0,0,0,0,0.179397413521912,0,1.10851914099963,0.189491411770485,0.325929952884052,0.848725428875941,0.234690248288502,0.837531287209079,0.476087281772027,1.17080188714679,0.472905432318573,0.44292937929755,0.478364305972461,1.3109065177259,1.55416483679306,1.15719246865209,0,0,0,0.551873492609465,4.81651769963376,5.86058432961016,0.163934945376675,1.76729649043061,0.315508219416257,1.17131623288992,1.29254038639679,3.34556317133573,5.34716817797746,6.79383673893198,0.404810701674894,2.04579100537918,1.58115111178609,41.7717711348349,1.27746076687442,1.06839362200353,0.977321756121456,0.659880491890142,0,1.45668381692989,0,0.377210159511796,0.295301892880773,0.614870295887855,0,1.45413491791002,0.356497378384721,0,0,1.03135543248187,7.14923172082955,0.540183282093931,0.258717367565509,0.643011105094777,1.06404140185364,1.24858172321449,1.81003922662333,2.43571959291679,0.23467170806371,0,0.661585194164886,8.90385765883992,4.03661066739764,4.1012788951146,6.68485126417564,9.02774948597837,0,7.23158677840988,0.854354403989263,0.82554747185289,0.925972636848558,1.13021074202815,0.820165366326151,0.457556346413045,1.5298058699447,1.11961161858926,1.52019971184866,0,0.316335993581135,0.813277868507395,0.216010681643603,0.418176592028937,0.218362563746178,0.404593039154462,0.743881101528023,1.04702376793612,0.388844919875379,0,3.94585057078933,2.39226473670366,2.48187735685646,1.55560950675238,1.16243841129958,1.520605129417,2.22978753426933,7.55185432094911,13.3171367420653,8.45544422891021,8.06484017522023,6.95224465381992,0,0.205421914329655,0.649604114888975,1.43221356533985,3.57626438606277,4.44723163223885,3.10148007066612,5.04832249740738,2.89585865288999,6.957006774442,9.55087231249574,10.3908788971556,9.11639837016238,1.36038230169127,0,0,0,0.965947970160952,0.93841237725591,0.549454872801795,0.428736758158132,1.00314420807073,35.0146142422581,39.12764510311,40.6755814541972,26.4653900809279,29.4585483501376,33.2373314851468,24.300810008345,31.5224842256954,22.203978040226,34.6899408873719,0.518936737920883,1.99512436700516,1.36586884603307,0,0.628839487883947,0.735374033800057,2.44471400581777,2.26638562962784,1.60459604795908,1.51618327058278,1.01391719956096,1.13175804831646,0.936415074698824,2.11283002936069,1.66562859971278,0,2.0859178670074,0.964546102318525,0.824171801606613,1.32479028120958,1.02860775715625,0.887379030796687,1.1921809497366,1.16277133305863,1.2234219453993,1.4384483341585,1.28049581010941,1.05227884575137,1.08643291076689,1.68342681497322,0.949080144993393,1.67457620038458,2.04615521584845,1.70430525304563,1.73615949883027,1.49886346762768,0.467863216890817,1.93383948643468,1.14772999241306,1.32354851471709,0.463735671240843 | |||
|short_description=p3@Tnik | |||
}} |
Latest revision as of 22:03, 1 October 2015
Short description: | p3@Tnik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tnik_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 120bp_to_ENSMUST00000161214, ENSMUST00000161234_5end |
EntrezGene: | Tnik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.01e-07 | 9 |
alpha-beta T cell | 2.01e-07 | 9 |
immature T cell | 2.01e-07 | 9 |
mature T cell | 2.01e-07 | 9 |
immature alpha-beta T cell | 2.01e-07 | 9 |
CD4-positive, alpha-beta T cell | 8.63e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.32e-14 | 75 |
regional part of nervous system | 3.37e-14 | 54 |
central nervous system | 1.87e-13 | 73 |
ectoderm-derived structure | 2.40e-13 | 95 |
ectoderm | 2.40e-13 | 95 |
presumptive ectoderm | 2.40e-13 | 95 |
neural tube | 4.40e-13 | 52 |
neural rod | 4.40e-13 | 52 |
future spinal cord | 4.40e-13 | 52 |
neural keel | 4.40e-13 | 52 |
ecto-epithelium | 1.73e-11 | 73 |
brain | 2.13e-11 | 47 |
future brain | 2.13e-11 | 47 |
gray matter | 7.75e-11 | 34 |
regional part of brain | 1.02e-10 | 46 |
neurectoderm | 3.55e-10 | 64 |
neural plate | 3.55e-10 | 64 |
presumptive neural plate | 3.55e-10 | 64 |
anterior neural tube | 4.97e-10 | 40 |
regional part of forebrain | 1.63e-09 | 39 |
forebrain | 1.63e-09 | 39 |
future forebrain | 1.63e-09 | 39 |
occipital lobe | 2.13e-09 | 10 |
visual cortex | 2.13e-09 | 10 |
neocortex | 2.13e-09 | 10 |
brain grey matter | 5.12e-09 | 29 |
regional part of telencephalon | 5.12e-09 | 29 |
telencephalon | 5.12e-09 | 29 |
pre-chordal neural plate | 1.59e-07 | 49 |