FFCP PHASE1:Mm9::chr11:60988522..60988562,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=216825 | |EntrezGene=216825 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q5DU02 | |UniProt=Q5DU02 | ||
|association_with_transcript=0bp_to_ENSMUST00000041683,ENSMUST00000174220,NM_001004143,uc007jhc.2_5end | |association_with_transcript=0bp_to_ENSMUST00000041683,ENSMUST00000174220,NM_001004143,uc007jhc.2_5end | ||
|cluster_id=chr11:60988522..60988562,- | |||
|description=CAGE_peak_1_at_Usp22_5end | |description=CAGE_peak_1_at_Usp22_5end | ||
|id=chr11:60988522..60988562,- | |id=chr11:60988522..60988562,- | ||
|ontology_enrichment_celltype=CL:0000117!1.69e-15!23;CL:0000337!1.69e-15!23;CL:0000540!4.17e-13!33;CL:0000047!4.17e-13!33;CL:0000031!4.17e-13!33;CL:0000404!4.17e-13!33;CL:0000393!6.15e-11!39;CL:0000211!6.15e-11!39;CL:0000221!8.43e-11!44;CL:0000133!8.43e-11!44;CL:0002319!8.60e-11!43;CL:0000055!1.34e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.69e-15,23;CL:0000337,1.69e-15,23;CL:0000540,4.17e-13,33;CL:0000047,4.17e-13,33;CL:0000031,4.17e-13,33;CL:0000404,4.17e-13,33;CL:0000393,6.15e-11,39;CL:0000211,6.15e-11,39;CL:0000221,8.43e-11,44;CL:0000133,8.43e-11,44;CL:0002319,8.60e-11,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.79e-27!73;UBERON:0005743!7.79e-27!73;UBERON:0000073!4.09e-26!75;UBERON:0001016!4.09e-26!75;UBERON:0004121!9.54e-26!102;UBERON:0000924!9.54e-26!102;UBERON:0006601!9.54e-26!102;UBERON:0002346!2.35e-25!71;UBERON:0003075!2.35e-25!71;UBERON:0007284!2.35e-25!71;UBERON:0001049!7.77e-25!52;UBERON:0005068!7.77e-25!52;UBERON:0006241!7.77e-25!52;UBERON:0007135!7.77e-25!52;UBERON:0000033!5.98e-24!63;UBERON:0000955!4.20e-23!50;UBERON:0006238!4.20e-23!50;UBERON:0002616!1.29e-22!49;UBERON:0003056!4.30e-21!49;UBERON:0003080!1.95e-19!40;UBERON:0002020!8.36e-19!34;UBERON:0002780!8.79e-19!39;UBERON:0001890!8.79e-19!39;UBERON:0006240!8.79e-19!39;UBERON:0002791!1.67e-15!29;UBERON:0003528!1.67e-15!29;UBERON:0001893!1.67e-15!29;UBERON:0000153!2.17e-12!94;UBERON:0007811!1.14e-10!86;UBERON:0000956!1.29e-10!21;UBERON:0001869!1.29e-10!21;UBERON:0000203!1.29e-10!21;UBERON:0002619!2.97e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.79e-27,73;UBERON:0000073,3.89e-26,54;UBERON:0001016,4.09e-26,75;UBERON:0002346,4.13e-26,64;UBERON:0003075,4.13e-26,64;UBERON:0007284,4.13e-26,64;UBERON:0004121,7.98e-26,95;UBERON:0000924,7.98e-26,95;UBERON:0006601,7.98e-26,95;UBERON:0001049,7.77e-25,52;UBERON:0005068,7.77e-25,52;UBERON:0006241,7.77e-25,52;UBERON:0007135,7.77e-25,52;UBERON:0010371,4.10e-24,73;UBERON:0000955,2.47e-21,47;UBERON:0006238,2.47e-21,47;UBERON:0003056,4.30e-21,49;UBERON:0002616,7.41e-21,46;UBERON:0003080,1.95e-19,40;UBERON:0002020,8.36e-19,34;UBERON:0002780,8.79e-19,39;UBERON:0001890,8.79e-19,39;UBERON:0006240,8.79e-19,39;UBERON:0010314,3.73e-18,92;UBERON:0003528,1.67e-15,29;UBERON:0002791,1.67e-15,29;UBERON:0001893,1.67e-15,29;UBERON:0000956,1.29e-10,21;UBERON:0001869,1.29e-10,21;UBERON:0000203,1.29e-10,21;UBERON:0002619,2.97e-08,17 | |||
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| ||
|short_description=p1@Usp22 | |short_description=p1@Usp22 | ||
}} | }} |
Latest revision as of 20:22, 1 October 2015
Short description: | p1@Usp22 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Usp22_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000041683, ENSMUST00000174220, NM_001004143, uc007jhc.2_5end |
EntrezGene: | Usp22 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.69e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.69e-15 | 23 |
neuron | 4.17e-13 | 33 |
neuronal stem cell | 4.17e-13 | 33 |
neuroblast | 4.17e-13 | 33 |
electrically signaling cell | 4.17e-13 | 33 |
electrically responsive cell | 6.15e-11 | 39 |
electrically active cell | 6.15e-11 | 39 |
ectodermal cell | 8.43e-11 | 44 |
neurectodermal cell | 8.43e-11 | 44 |
neural cell | 8.60e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.79e-27 | 73 |
regional part of nervous system | 3.89e-26 | 54 |
nervous system | 4.09e-26 | 75 |
neurectoderm | 4.13e-26 | 64 |
neural plate | 4.13e-26 | 64 |
presumptive neural plate | 4.13e-26 | 64 |
ectoderm-derived structure | 7.98e-26 | 95 |
ectoderm | 7.98e-26 | 95 |
presumptive ectoderm | 7.98e-26 | 95 |
neural tube | 7.77e-25 | 52 |
neural rod | 7.77e-25 | 52 |
future spinal cord | 7.77e-25 | 52 |
neural keel | 7.77e-25 | 52 |
ecto-epithelium | 4.10e-24 | 73 |
brain | 2.47e-21 | 47 |
future brain | 2.47e-21 | 47 |
pre-chordal neural plate | 4.30e-21 | 49 |
regional part of brain | 7.41e-21 | 46 |
anterior neural tube | 1.95e-19 | 40 |
gray matter | 8.36e-19 | 34 |
regional part of forebrain | 8.79e-19 | 39 |
forebrain | 8.79e-19 | 39 |
future forebrain | 8.79e-19 | 39 |
structure with developmental contribution from neural crest | 3.73e-18 | 92 |
brain grey matter | 1.67e-15 | 29 |
regional part of telencephalon | 1.67e-15 | 29 |
telencephalon | 1.67e-15 | 29 |
cerebral cortex | 1.29e-10 | 21 |
cerebral hemisphere | 1.29e-10 | 21 |
pallium | 1.29e-10 | 21 |
regional part of cerebral cortex | 2.97e-08 | 17 |