FFCP PHASE1:Mm9::chr3:154260009..154260052,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr3:154260009..154260052,- to FFCP PHASE1:Mm9::chr3:154260009..154260052,-: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=209584 | |EntrezGene=209584 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=473 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BSA9 | |UniProt=Q8BSA9 | ||
|association_with_transcript=6bp_to_ENSMUST00000052774_5end | |||
|cluster_id=chr3:154260009..154260052,- | |||
|description=CAGE_peak_1_at_Tyw3_5end | |||
|id=chr3:154260009..154260052,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!6.76e-15!94;UBERON:0000033!2.22e-12!63;UBERON:0007811!2.94e-12!86;UBERON:0003056!4.82e-11!49;UBERON:0002346!7.87e-11!71;UBERON:0003075!7.87e-11!71;UBERON:0007284!7.87e-11!71;UBERON:0000468!1.42e-09!333;UBERON:0001049!1.80e-09!52;UBERON:0005068!1.80e-09!52;UBERON:0006241!1.80e-09!52;UBERON:0007135!1.80e-09!52;UBERON:0000955!2.47e-09!50;UBERON:0006238!2.47e-09!50;UBERON:0002616!8.21e-09!49;UBERON:0000922!3.41e-08!328;UBERON:0003080!3.64e-08!40;UBERON:0002780!1.17e-07!39;UBERON:0001890!1.17e-07!39;UBERON:0006240!1.17e-07!39;UBERON:0002020!1.61e-07!34;UBERON:0004121!3.33e-07!102;UBERON:0000924!3.33e-07!102;UBERON:0006601!3.33e-07!102;UBERON:0002791!3.58e-07!29;UBERON:0003528!3.58e-07!29;UBERON:0001893!3.58e-07!29;UBERON:0001017!7.82e-07!73;UBERON:0005743!7.82e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.34e-12,64;UBERON:0003075,3.34e-12,64;UBERON:0007284,3.34e-12,64;UBERON:0010314,5.86e-12,92;UBERON:0010371,1.32e-11,73;UBERON:0003056,4.78e-11,49;UBERON:0001049,2.15e-09,52;UBERON:0005068,2.15e-09,52;UBERON:0006241,2.15e-09,52;UBERON:0007135,2.15e-09,52;UBERON:0000073,3.36e-09,54;UBERON:0000955,4.74e-09,47;UBERON:0006238,4.74e-09,47;UBERON:0000922,1.52e-08,320;UBERON:0002616,1.58e-08,46;UBERON:0003080,3.62e-08,40;UBERON:0004121,7.19e-08,95;UBERON:0000924,7.19e-08,95;UBERON:0006601,7.19e-08,95;UBERON:0002780,1.16e-07,39;UBERON:0001890,1.16e-07,39;UBERON:0006240,1.16e-07,39;UBERON:0002020,1.60e-07,34;UBERON:0003528,3.56e-07,29;UBERON:0002791,3.56e-07,29;UBERON:0001893,3.56e-07,29;UBERON:0001017,8.88e-07,73 | |||
|phase1_expression=7.52699581392532,0.348975407639361,0.454999239389536,1.20985684522732,0,1.6787927191189,1.40167584357315,2.96983643915625,3.801295498095,7.0219357896598,5.65019295144166,6.54131703761759,3.93761678841773,4.10875891369288,1.99865857089398,3.44207954562704,0,4.25873923233621,4.38766187538364,3.81950686618227,3.57181818634493,3.47518329203099,1.30599894569468,0.319984845586813,1.14704640533585,1.14846392823004,0,1.29282739611533,2.09025761402011,1.00812051903972,1.55211357458713,4.44521471421742,4.30545351309199,0,1.73310971850765,3.49092755252834,2.6542016314108,0.418531630736908,0,1.57057123192139,1.17646297606203,0.683045484958446,2.42755176515577,3.65100772129174,2.93993100536592,1.83546752161682,0.782391344348039,0.872100625521786,1.97717564461025,1.55543919259427,1.39986421625363,1.43752564364972,3.18786951509699,0.725362142011344,2.01656279485478,1.28629718017973,2.57880095944881,0.515672092277442,6.06949382578793,3.70293685490423,1.26766280701236,0,0,0.449949858640699,0,0.7104801149461,1.19840044207362,1.53687322128622,5.49554945234932,5.8052553482627,6.94072372459561,4.28476476605705,4.41737081903227,5.38959516545798,5.65488279007595,7.35375029288017,3.30347642998166,6.89511625660014,7.21950706304344,5.80299666012853,5.58074625974699,5.2091337055676,6.97957497503452,7.31591393041184,7.33431589328689,5.59794312399969,7.54569908235246,8.01517617048792,3.40767869999328,3.09843396437821,2.02905142091174,3.44169550792555,0.679971333707751,0.539703191637817,2.59910566979068,4.03224198387602,2.24711072210803,2.89731548382698,2.33807404142582,1.06001872353102,5.63373679106722,5.13305909657271,0,0,3.030874574157,2.02687892380079,3.0331466700887,1.82694207550496,5.95557132388495,3.85949561568544,7.28638372417771,5.1759131313064,2.7673859670727,3.16517545160507,3.88042733547826,2.13633205260448,2.22475470960936,4.04878199375753,0.884610551949874,4.04417124868523,4.19598885074748,2.42437626567611,3.72783522436244,10.2473278954042,9.42510180660548,1.27728527604296,2.51611761462433,1.19980546198682,2.92261522268049,10.4853447583376,6.40500843946077,6.03140890141749,10.081810571152,8.18289463457058,8.3115217823824,7.13861557498134,5.09196819251581,3.23458123586242,2.77995034277042,2.52530227063769,10.4096354370163,8.73627996847197,7.20248519221397,8.89158425230719,8.36848939561333,11.6583485459213,7.49613796477831,7.24369438069244,10.1316956678436,12.4810012910761,14.0760899331159,7.45265490253754,9.73165372289593,5.2237824978325,4.93877127379064,7.96137067273973,2.80885274925294,2.31613116403244,0.852490498186778,4.97101854085205,8.20841209933837,5.58192390529146,7.33908680314152,8.85439042863317,8.02188987014367,7.20855228726264,8.04820204198858,5.25444040652263,5.43047504714485,6.07419617092652,3.89130285820108,6.28659945928929,5.92785311285837,3.75777972529041,9.46304768538573,6.27718135513635,0.660837565967596,1.58670339998127,10.8777007772969,6.73486348395272,5.54130083685001,5.04208811558356,5.11469500843202,2.28270751335071,1.89811624617805,1.97638745668813,3.51869292320377,2.78539060857611,2.53453313254856,2.69645822596266,1.29682829924817,2.38969527905241,6.63837653335786,8.79713547094912,6.76246414038483,7.73875045812194,7.95205197387266,6.45249542990931,7.71485752915939,4.87113488332687,5.65195420228949,4.81248939295022,2.37162101669719,5.83957870006329,4.91397487783007,5.17182858485164,3.85434230638156,4.3411888755435,2.29163266603278,1.43848068725405,1.94562272130042,3.0201755450689,1.43768206527355,1.48856379067401,3.12037673114561,3.53610429125956,1.79397413521912,2.41221760681684,5.17308932466493,10.9905018826881,8.31121379854332,8.31750920298422,7.04070744865506,6.19773152534718,4.52282917683426,6.24427673144956,7.09358148477859,5.53661724121937,5.42146213435456,4.91589944147214,4.14443956478149,3.61622646453779,3.01582567878545,0,3.44234991113325,3.31124095565679,9.79358598925531,9.14251155419185,5.57378814280696,3.02965112645248,4.41711507182759,6.24701990874622,4.52389135238878,4.30143836314594,5.79276552614225,6.22768367735431,2.83367491172426,1.46127928955656,3.55759000151871,10.9249247583414,6.10342366395555,7.30068975035746,6.51547837414304,7.25868541079156,0,5.58395463156457,5.74414758233027,3.01768127609437,3.83892460745005,2.76691633149535,3.35956781118687,4.36240475373007,3.20847640546249,2.21225730555071,3.16255825724996,4.12542172992747,2.38307724027652,9.54323798365944,7.37344497561701,6.00143698088458,5.14286677562593,4.8159580752559,5.59466670047211,3.34911444026059,2.3467170806371,2.96564899209348,2.64634077665954,3.62749756471256,3.87514624070173,5.97097956788743,5.49112782414428,5.0883678920969,2.04036585640896,8.34413859047294,3.93003025835061,8.87463532241857,5.18544676635193,3.39063222608444,2.59719032669948,2.51655990527175,3.22959016988325,1.95932033253121,1.93479963326193,0.954670618015114,10.597255784968,10.3692928234693,6.04829908602087,4.59994251231831,4.36725127492355,5.39457385539283,4.21532624199213,3.14107130380836,2.33306951925227,3.72803587852155,1.69107881605257,7.62534384824292,8.43838301331198,9.33365704051429,8.00790905561933,6.58928889414035,6.45464812551647,5.33837977860195,6.71099804324549,6.03960302065015,3.45636007509439,6.63623353319174,6.08175645870493,5.75181360123033,5.06691209613401,6.98204113103178,4.37098980518783,6.37035882455835,5.46451250545936,6.3608863467333,5.10585604588499,5.44461399738939,4.67797827550812,7.21588812302471,6.54510652216786,5.21479882314986,2.21985953374065,1.88399098879899,1.34307693091263,3.67060228661162,3.00291960721891,5.86085197655248,4.28736758158132,0.501572104035363,7.34177395402186,9.20650473014354,8.59343270159095,6.35856774671644,9.59115527678899,12.8416962556249,8.10027000278167,11.7083512838297,9.9691329976525,10.8729665467882,9.75601067291261,11.5717213286299,8.87814749921498,6.07766792670735,6.07878171621149,6.25067928730048,6.22290837844523,5.35691148821125,7.38114182061175,6.06473308233114,6.33698249725599,5.47016390019621,5.89941497060259,5.12201219238954,5.45636955078326,7.62069906052918,4.86714168968393,6.17309505483856,4.53294490883637,8.24313952752625,3.08582327146874,8.16388708332953,5.48403236878838,6.39524233182245,5.17601592284318,6.76916863133412,6.58540702341981,5.5244639401947,4.48153575691344,2.24456908663095,4.98267076121531,5.71325997778268,6.54769669071503,5.57772628269478,6.94463799532109,7.74412791607632,4.91256377735358,3.43793686477277,2.86932498103265,3.75005412503176,6.72416723299222 | |phase1_expression=7.52699581392532,0.348975407639361,0.454999239389536,1.20985684522732,0,1.6787927191189,1.40167584357315,2.96983643915625,3.801295498095,7.0219357896598,5.65019295144166,6.54131703761759,3.93761678841773,4.10875891369288,1.99865857089398,3.44207954562704,0,4.25873923233621,4.38766187538364,3.81950686618227,3.57181818634493,3.47518329203099,1.30599894569468,0.319984845586813,1.14704640533585,1.14846392823004,0,1.29282739611533,2.09025761402011,1.00812051903972,1.55211357458713,4.44521471421742,4.30545351309199,0,1.73310971850765,3.49092755252834,2.6542016314108,0.418531630736908,0,1.57057123192139,1.17646297606203,0.683045484958446,2.42755176515577,3.65100772129174,2.93993100536592,1.83546752161682,0.782391344348039,0.872100625521786,1.97717564461025,1.55543919259427,1.39986421625363,1.43752564364972,3.18786951509699,0.725362142011344,2.01656279485478,1.28629718017973,2.57880095944881,0.515672092277442,6.06949382578793,3.70293685490423,1.26766280701236,0,0,0.449949858640699,0,0.7104801149461,1.19840044207362,1.53687322128622,5.49554945234932,5.8052553482627,6.94072372459561,4.28476476605705,4.41737081903227,5.38959516545798,5.65488279007595,7.35375029288017,3.30347642998166,6.89511625660014,7.21950706304344,5.80299666012853,5.58074625974699,5.2091337055676,6.97957497503452,7.31591393041184,7.33431589328689,5.59794312399969,7.54569908235246,8.01517617048792,3.40767869999328,3.09843396437821,2.02905142091174,3.44169550792555,0.679971333707751,0.539703191637817,2.59910566979068,4.03224198387602,2.24711072210803,2.89731548382698,2.33807404142582,1.06001872353102,5.63373679106722,5.13305909657271,0,0,3.030874574157,2.02687892380079,3.0331466700887,1.82694207550496,5.95557132388495,3.85949561568544,7.28638372417771,5.1759131313064,2.7673859670727,3.16517545160507,3.88042733547826,2.13633205260448,2.22475470960936,4.04878199375753,0.884610551949874,4.04417124868523,4.19598885074748,2.42437626567611,3.72783522436244,10.2473278954042,9.42510180660548,1.27728527604296,2.51611761462433,1.19980546198682,2.92261522268049,10.4853447583376,6.40500843946077,6.03140890141749,10.081810571152,8.18289463457058,8.3115217823824,7.13861557498134,5.09196819251581,3.23458123586242,2.77995034277042,2.52530227063769,10.4096354370163,8.73627996847197,7.20248519221397,8.89158425230719,8.36848939561333,11.6583485459213,7.49613796477831,7.24369438069244,10.1316956678436,12.4810012910761,14.0760899331159,7.45265490253754,9.73165372289593,5.2237824978325,4.93877127379064,7.96137067273973,2.80885274925294,2.31613116403244,0.852490498186778,4.97101854085205,8.20841209933837,5.58192390529146,7.33908680314152,8.85439042863317,8.02188987014367,7.20855228726264,8.04820204198858,5.25444040652263,5.43047504714485,6.07419617092652,3.89130285820108,6.28659945928929,5.92785311285837,3.75777972529041,9.46304768538573,6.27718135513635,0.660837565967596,1.58670339998127,10.8777007772969,6.73486348395272,5.54130083685001,5.04208811558356,5.11469500843202,2.28270751335071,1.89811624617805,1.97638745668813,3.51869292320377,2.78539060857611,2.53453313254856,2.69645822596266,1.29682829924817,2.38969527905241,6.63837653335786,8.79713547094912,6.76246414038483,7.73875045812194,7.95205197387266,6.45249542990931,7.71485752915939,4.87113488332687,5.65195420228949,4.81248939295022,2.37162101669719,5.83957870006329,4.91397487783007,5.17182858485164,3.85434230638156,4.3411888755435,2.29163266603278,1.43848068725405,1.94562272130042,3.0201755450689,1.43768206527355,1.48856379067401,3.12037673114561,3.53610429125956,1.79397413521912,2.41221760681684,5.17308932466493,10.9905018826881,8.31121379854332,8.31750920298422,7.04070744865506,6.19773152534718,4.52282917683426,6.24427673144956,7.09358148477859,5.53661724121937,5.42146213435456,4.91589944147214,4.14443956478149,3.61622646453779,3.01582567878545,0,3.44234991113325,3.31124095565679,9.79358598925531,9.14251155419185,5.57378814280696,3.02965112645248,4.41711507182759,6.24701990874622,4.52389135238878,4.30143836314594,5.79276552614225,6.22768367735431,2.83367491172426,1.46127928955656,3.55759000151871,10.9249247583414,6.10342366395555,7.30068975035746,6.51547837414304,7.25868541079156,0,5.58395463156457,5.74414758233027,3.01768127609437,3.83892460745005,2.76691633149535,3.35956781118687,4.36240475373007,3.20847640546249,2.21225730555071,3.16255825724996,4.12542172992747,2.38307724027652,9.54323798365944,7.37344497561701,6.00143698088458,5.14286677562593,4.8159580752559,5.59466670047211,3.34911444026059,2.3467170806371,2.96564899209348,2.64634077665954,3.62749756471256,3.87514624070173,5.97097956788743,5.49112782414428,5.0883678920969,2.04036585640896,8.34413859047294,3.93003025835061,8.87463532241857,5.18544676635193,3.39063222608444,2.59719032669948,2.51655990527175,3.22959016988325,1.95932033253121,1.93479963326193,0.954670618015114,10.597255784968,10.3692928234693,6.04829908602087,4.59994251231831,4.36725127492355,5.39457385539283,4.21532624199213,3.14107130380836,2.33306951925227,3.72803587852155,1.69107881605257,7.62534384824292,8.43838301331198,9.33365704051429,8.00790905561933,6.58928889414035,6.45464812551647,5.33837977860195,6.71099804324549,6.03960302065015,3.45636007509439,6.63623353319174,6.08175645870493,5.75181360123033,5.06691209613401,6.98204113103178,4.37098980518783,6.37035882455835,5.46451250545936,6.3608863467333,5.10585604588499,5.44461399738939,4.67797827550812,7.21588812302471,6.54510652216786,5.21479882314986,2.21985953374065,1.88399098879899,1.34307693091263,3.67060228661162,3.00291960721891,5.86085197655248,4.28736758158132,0.501572104035363,7.34177395402186,9.20650473014354,8.59343270159095,6.35856774671644,9.59115527678899,12.8416962556249,8.10027000278167,11.7083512838297,9.9691329976525,10.8729665467882,9.75601067291261,11.5717213286299,8.87814749921498,6.07766792670735,6.07878171621149,6.25067928730048,6.22290837844523,5.35691148821125,7.38114182061175,6.06473308233114,6.33698249725599,5.47016390019621,5.89941497060259,5.12201219238954,5.45636955078326,7.62069906052918,4.86714168968393,6.17309505483856,4.53294490883637,8.24313952752625,3.08582327146874,8.16388708332953,5.48403236878838,6.39524233182245,5.17601592284318,6.76916863133412,6.58540702341981,5.5244639401947,4.48153575691344,2.24456908663095,4.98267076121531,5.71325997778268,6.54769669071503,5.57772628269478,6.94463799532109,7.74412791607632,4.91256377735358,3.43793686477277,2.86932498103265,3.75005412503176,6.72416723299222 | ||
|short_description=p1@Tyw3 | |||
}} | }} |
Latest revision as of 20:12, 1 October 2015
Short description: | p1@Tyw3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tyw3_5end |
Coexpression cluster: | MCL_coexpression_mm9:473 |
Association with transcript: | 6bp_to_ENSMUST00000052774_5end |
EntrezGene: | Tyw3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.34e-12 | 64 |
neural plate | 3.34e-12 | 64 |
presumptive neural plate | 3.34e-12 | 64 |
structure with developmental contribution from neural crest | 5.86e-12 | 92 |
ecto-epithelium | 1.32e-11 | 73 |
pre-chordal neural plate | 4.78e-11 | 49 |
neural tube | 2.15e-09 | 52 |
neural rod | 2.15e-09 | 52 |
future spinal cord | 2.15e-09 | 52 |
neural keel | 2.15e-09 | 52 |
regional part of nervous system | 3.36e-09 | 54 |
brain | 4.74e-09 | 47 |
future brain | 4.74e-09 | 47 |
embryo | 1.52e-08 | 320 |
regional part of brain | 1.58e-08 | 46 |
anterior neural tube | 3.62e-08 | 40 |
ectoderm-derived structure | 7.19e-08 | 95 |
ectoderm | 7.19e-08 | 95 |
presumptive ectoderm | 7.19e-08 | 95 |
regional part of forebrain | 1.16e-07 | 39 |
forebrain | 1.16e-07 | 39 |
future forebrain | 1.16e-07 | 39 |
gray matter | 1.60e-07 | 34 |
brain grey matter | 3.56e-07 | 29 |
regional part of telencephalon | 3.56e-07 | 29 |
telencephalon | 3.56e-07 | 29 |
central nervous system | 8.88e-07 | 73 |