FFCP PHASE1:Mm9::chrX:20265090..20265165,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18555 | |EntrezGene=18555 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |MCL_coexpression_id=0 | ||
|TSSclassifier=NA | |||
|UniProt=Q3TM24 | |UniProt=Q3TM24 | ||
|association_with_transcript=0bp_to_ENSMUST00000132365,uc009stn.1_5end | |association_with_transcript=0bp_to_ENSMUST00000132365,uc009stn.1_5end | ||
|cluster_id=chrX:20265090..20265165,+ | |||
|description=CAGE_peak_3_at_Cdk16_5end | |description=CAGE_peak_3_at_Cdk16_5end | ||
|id=chrX:20265090..20265165,+ | |id=chrX:20265090..20265165,+ | ||
|ontology_enrichment_celltype=CL:0000393!2.04e-07!39;CL:0000211!2.04e-07!39;CL:0000117!2.56e-07!23;CL:0000337!2.56e-07!23 | |ontology_enrichment_celltype=CL:0000393!2.04e-07!39;CL:0000211!2.04e-07!39;CL:0000117!2.56e-07!23;CL:0000337!2.56e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.03e-07,39;CL:0000211,2.03e-07,39;CL:0000117,2.55e-07,23;CL:0000337,2.55e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!3.90e-15!50;UBERON:0006238!3.90e-15!50;UBERON:0002616!1.69e-14!49;UBERON:0001049!1.82e-14!52;UBERON:0005068!1.82e-14!52;UBERON:0006241!1.82e-14!52;UBERON:0007135!1.82e-14!52;UBERON:0001017!2.91e-14!73;UBERON:0005743!2.91e-14!73;UBERON:0000073!5.75e-14!75;UBERON:0001016!5.75e-14!75;UBERON:0003080!6.03e-12!40;UBERON:0002346!2.12e-11!71;UBERON:0003075!2.12e-11!71;UBERON:0007284!2.12e-11!71;UBERON:0002780!2.31e-11!39;UBERON:0001890!2.31e-11!39;UBERON:0006240!2.31e-11!39;UBERON:0000033!1.09e-10!63;UBERON:0004121!3.54e-10!102;UBERON:0000924!3.54e-10!102;UBERON:0006601!3.54e-10!102;UBERON:0002020!1.41e-09!34;UBERON:0002791!4.93e-09!29;UBERON:0003528!4.93e-09!29;UBERON:0001893!4.93e-09!29;UBERON:0003056!5.52e-09!49;UBERON:0000956!4.89e-08!21;UBERON:0001869!4.89e-08!21;UBERON:0000203!4.89e-08!21 | |ontology_enrichment_uberon=UBERON:0000955!3.90e-15!50;UBERON:0006238!3.90e-15!50;UBERON:0002616!1.69e-14!49;UBERON:0001049!1.82e-14!52;UBERON:0005068!1.82e-14!52;UBERON:0006241!1.82e-14!52;UBERON:0007135!1.82e-14!52;UBERON:0001017!2.91e-14!73;UBERON:0005743!2.91e-14!73;UBERON:0000073!5.75e-14!75;UBERON:0001016!5.75e-14!75;UBERON:0003080!6.03e-12!40;UBERON:0002346!2.12e-11!71;UBERON:0003075!2.12e-11!71;UBERON:0007284!2.12e-11!71;UBERON:0002780!2.31e-11!39;UBERON:0001890!2.31e-11!39;UBERON:0006240!2.31e-11!39;UBERON:0000033!1.09e-10!63;UBERON:0004121!3.54e-10!102;UBERON:0000924!3.54e-10!102;UBERON:0006601!3.54e-10!102;UBERON:0002020!1.41e-09!34;UBERON:0002791!4.93e-09!29;UBERON:0003528!4.93e-09!29;UBERON:0001893!4.93e-09!29;UBERON:0003056!5.52e-09!49;UBERON:0000956!4.89e-08!21;UBERON:0001869!4.89e-08!21;UBERON:0000203!4.89e-08!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.74e-15,54;UBERON:0001049,1.80e-14,52;UBERON:0005068,1.80e-14,52;UBERON:0006241,1.80e-14,52;UBERON:0007135,1.80e-14,52;UBERON:0001017,3.04e-14,73;UBERON:0001016,6.00e-14,75;UBERON:0000955,6.21e-14,47;UBERON:0006238,6.21e-14,47;UBERON:0002616,2.62e-13,46;UBERON:0010314,1.88e-12,92;UBERON:0003080,5.98e-12,40;UBERON:0002780,2.29e-11,39;UBERON:0001890,2.29e-11,39;UBERON:0006240,2.29e-11,39;UBERON:0002346,7.04e-11,64;UBERON:0003075,7.04e-11,64;UBERON:0007284,7.04e-11,64;UBERON:0002020,1.40e-09,34;UBERON:0004121,1.70e-09,95;UBERON:0000924,1.70e-09,95;UBERON:0006601,1.70e-09,95;UBERON:0010371,1.85e-09,73;UBERON:0003528,4.90e-09,29;UBERON:0002791,4.90e-09,29;UBERON:0001893,4.90e-09,29;UBERON:0003056,5.49e-09,49;UBERON:0000956,4.87e-08,21;UBERON:0001869,4.87e-08,21;UBERON:0000203,4.87e-08,21 | |||
|phase1_expression=3.68342348341026,2.79180326111489,3.18499467572675,2.72217790176147,4.50806156951712,3.69334398206158,2.33612640595526,2.06597317506522,1.267098499365,0.70219357896598,1.02730780935303,1.11681022593471,1.88320802924326,2.97229368224591,0.999329285446988,0.809901069559304,0.699561878128147,0.630924330716475,1.37114433605739,1.69755860719212,17.3488311908182,2.38298282882125,2.35079810225042,2.07990149631429,4.12936705920906,2.29692785646008,2.15380998079537,2.58565479223067,3.80046838912748,2.01624103807945,1.77384408524244,2.54012269383853,2.46025915033828,0,3.75507105676657,3.49092755252834,2.6542016314108,3.76678467663217,0,1.0470474879476,4.1176204162171,0,0,7.05022180663233,6.18399280439039,4.77221555620372,4.69434806608824,2.61630187656536,2.19686182734472,4.6663175777828,0.839918529752175,1.43752564364972,1.67782606057736,2.90144856804538,2.01656279485478,5.14518872071894,3.43840127926508,7.21940929188419,6.67644320836673,9.52183762689659,8.23980824558033,3.38844532069132,4.4464739805557,3.1496490104849,5.93319817540185,0.7104801149461,2.69640099466564,2.68952813725088,5.70292867696627,7.69533848490637,6.09942387919008,6.28432165688368,7.95126747425809,5.51208596467293,6.80502844229478,8.27296907949019,5.50579404996943,7.78892762319645,5.9906547969935,6.72620067423989,7.13603620098795,4.68822033501084,6.14202597803038,1.12552522006336,5.19514042441154,2.65165726926301,4.27115042397309,5.40558392893372,2.87759534666099,4.38315048619356,2.6087803983151,0.860423876981386,2.03991400112325,2.15881276655127,0,0.448026887097336,4.21333260395256,5.62420064507591,3.11743205523443,4.59341446863442,3.66192891419369,2.56652954828636,5.09610479413291,0,8.65964164044856,8.10751569520315,7.07734223020697,3.53970027129086,2.84831672011889,4.60170631100957,3.64319186208885,3.65358573974569,4.38169444786511,4.82312449768392,5.52666923537813,5.02666365318702,1.97755974187499,5.92857363371638,0.884610551949874,1.94120219936891,0.883366073841574,2.42437626567611,0,7.90508151931177,11.7290155815535,4.59822699375465,1.67741174308288,0.599902730993408,2.1601938602421,8.98743836428936,4.11750542536764,9.42407640846483,7.82209440865244,9.46147192122223,6.2336413367868,6.65189178577806,2.74966282395854,3.6078021476927,12.3834151632501,1.05220927943237,4.29397461776922,2.98872735763515,4.86167750474443,1.9591626318643,3.46986145671772,4.22775276940004,2.99845518591132,2.32833033665114,5.38919982332106,3.78212160335639,3.69497360744293,3.72632745126877,5.00485048606076,4.179025998266,3.2925141825271,6.17006227137329,2.1066395619397,1.02939162845886,0.852490498186778,5.59239585845855,4.45599513964083,2.52086886045421,4.49814997611899,4.52557733019029,4.47374627373397,3.95307706075693,4.29237442239391,3.97002164048376,5.26591519723137,5.91002870684743,3.64809642956351,5.4093995347373,5.70830299756732,4.02619256281115,5.04695876553905,7.9236551532049,3.63460661282178,3.17340679996253,6.61193576659225,6.50262681209228,4.25262622362908,5.24377164020691,4.44756087689741,3.61428689613862,2.84717436926707,2.79988223030818,2.76468729680296,2.38747766449381,2.33956904542944,3.59527763461689,2.80979464837102,4.38110801159608,5.12103332573321,4.68418901699888,7.88954149711563,4.07302655690629,4.84881217919064,3.99774173374816,3.47800954183415,2.21415221969403,2.66897837330337,2.34454611451421,0.889357881261447,1.66845105716094,2.55526693647164,3.14806957338795,1.01430060694251,0.482354319504834,2.29163266603278,2.01387296215567,1.45921704097532,1.64736847912849,2.87536413054709,0.372140947668503,1.87222603868736,1.01031551178845,1.61457672169721,0.482443521363367,3.8798169934987,3.60033682363921,7.33342393989116,4.2436271443797,3.28566347603903,4.18765643604539,3.33261097240419,5.26860849216057,3.31033802623001,4.65075848262427,3.34855014180723,3.27726629431476,3.45369963731791,1.88043776155965,0,1.08781136763742,3.93411418415229,3.31124095565679,5.13761887960934,6.79827782234778,4.09837363441689,1.26235463602186,4.10160685241134,1.56175497718655,4.30846795465598,4.06246956519338,4.45597348164788,2.83076530788832,5.66734982344852,3.50707029493574,5.53402889125133,9.63963949265421,4.5420827266646,4.62970569534864,3.4206261464251,5.27904393512113,1.32745138339963,2.42780636154981,3.93020624054176,3.20628635585027,5.02013217897314,6.45613810682248,4.65170927702798,3.99887102425256,3.56497378384721,3.47640433729398,4.21674434299995,7.21948802737308,6.12791290356818,4.68158844481407,5.30370603509293,4.28674070063185,5.49754724291048,5.52943334566419,3.78462747384878,8.22055362609418,3.28540391289194,8.04961869282517,6.17479514553893,1.81374878235628,4.35953952078945,3.25689794612042,3.10368094408155,4.43180429311665,3.78925087618806,7.78786268444141,1.19609616558497,2.88941615148511,1.85194527369712,1.69531611304222,1.23024804948923,2.28778173206523,1.5298058699447,1.11961161858926,2.21119958087078,0.954670618015114,7.11755985557555,4.67634774391752,3.99619761040665,3.76358932826044,4.80397640241591,2.42755823492677,2.810217494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| ||
|short_description=p3@Cdk16 | |short_description=p3@Cdk16 | ||
}} | }} |
Latest revision as of 19:27, 1 October 2015
Short description: | p3@Cdk16 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cdk16_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000132365, uc009stn.1_5end |
EntrezGene: | Cdk16 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.03e-07 | 39 |
electrically active cell | 2.03e-07 | 39 |
CNS neuron (sensu Vertebrata) | 2.55e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.55e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.74e-15 | 54 |
neural tube | 1.80e-14 | 52 |
neural rod | 1.80e-14 | 52 |
future spinal cord | 1.80e-14 | 52 |
neural keel | 1.80e-14 | 52 |
central nervous system | 3.04e-14 | 73 |
nervous system | 6.00e-14 | 75 |
brain | 6.21e-14 | 47 |
future brain | 6.21e-14 | 47 |
regional part of brain | 2.62e-13 | 46 |
structure with developmental contribution from neural crest | 1.88e-12 | 92 |
anterior neural tube | 5.98e-12 | 40 |
regional part of forebrain | 2.29e-11 | 39 |
forebrain | 2.29e-11 | 39 |
future forebrain | 2.29e-11 | 39 |
neurectoderm | 7.04e-11 | 64 |
neural plate | 7.04e-11 | 64 |
presumptive neural plate | 7.04e-11 | 64 |
gray matter | 1.40e-09 | 34 |
ectoderm-derived structure | 1.70e-09 | 95 |
ectoderm | 1.70e-09 | 95 |
presumptive ectoderm | 1.70e-09 | 95 |
ecto-epithelium | 1.85e-09 | 73 |
brain grey matter | 4.90e-09 | 29 |
regional part of telencephalon | 4.90e-09 | 29 |
telencephalon | 4.90e-09 | 29 |
pre-chordal neural plate | 5.49e-09 | 49 |
cerebral cortex | 4.87e-08 | 21 |
cerebral hemisphere | 4.87e-08 | 21 |
pallium | 4.87e-08 | 21 |