FFCP PHASE2:Mm9::chr1:88051327..88051396,+: Difference between revisions
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|DHSsupport=NA | |DHSsupport=NA | ||
|DPIdataset=NA | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene=78795 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=463 | |MCL_coexpression_id=463 | ||
|TSSclassifier=NA | |TSSclassifier=NA | ||
|UniProt= | |UniProt=Q9D2I5 | ||
|association_with_transcript=0bp_to_ENSMUST00000027434,ENSMUST00000113309,ENSMUST00000123618,ENSMUST00000131412,ENSMUST00000134858,ENSMUST00000135973,ENSMUST00000153389,ENSMUST00000153653,ENSMUST00000155168,NM_027456,NM_030184,uc007bva.1,uc007bvb.1,uc007bvc.1,uc007bvd.1,uc007bve.1,uc007bvf.1,uc007bvg.1,uc007bvh.1,uc007bvi.1_5end | |association_with_transcript=0bp_to_ENSMUST00000027434,ENSMUST00000113309,ENSMUST00000123618,ENSMUST00000131412,ENSMUST00000134858,ENSMUST00000135973,ENSMUST00000153389,ENSMUST00000153653,ENSMUST00000155168,NM_027456,NM_030184,uc007bva.1,uc007bvb.1,uc007bvc.1,uc007bvd.1,uc007bve.1,uc007bvf.1,uc007bvg.1,uc007bvh.1,uc007bvi.1_5end | ||
|cluster_id=chr1:88051327..88051396,+ | |cluster_id=chr1:88051327..88051396,+ | ||
Latest revision as of 17:31, 1 October 2015
| Short description: | p1@Armc9 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Armc9_5end |
| Coexpression cluster: | MCL_coexpression_mm9:463 |
| Association with transcript: | 0bp_to_ENSMUST00000027434, ENSMUST00000113309, ENSMUST00000123618, ENSMUST00000131412, ENSMUST00000134858, ENSMUST00000135973, ENSMUST00000153389, ENSMUST00000153653, ENSMUST00000155168, NM_027456, NM_030184, uc007bva.1, uc007bvb.1, uc007bvc.1, uc007bvd.1, uc007bve.1, uc007bvf.1, uc007bvg.1, uc007bvh.1, uc007bvi.1_5end |
| EntrezGene: | Armc9 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 2.49e-09 | 23 |
| neuroblast (sensu Vertebrata) | 2.49e-09 | 23 |
| ectodermal cell | 2.47e-08 | 44 |
| neurectodermal cell | 2.47e-08 | 44 |
| neuron | 2.73e-08 | 33 |
| neuronal stem cell | 2.73e-08 | 33 |
| neuroblast | 2.73e-08 | 33 |
| electrically signaling cell | 2.73e-08 | 33 |
| neural cell | 4.15e-08 | 43 |
| electrically responsive cell | 4.41e-07 | 39 |
| electrically active cell | 4.41e-07 | 39 |
| Ontology term | p-value | n |
|---|---|---|
| neurectoderm | 9.26e-27 | 64 |
| neural plate | 9.26e-27 | 64 |
| presumptive neural plate | 9.26e-27 | 64 |
| central nervous system | 2.70e-26 | 73 |
| nervous system | 8.79e-25 | 75 |
| regional part of nervous system | 3.10e-24 | 54 |
| neural tube | 1.45e-23 | 52 |
| neural rod | 1.45e-23 | 52 |
| future spinal cord | 1.45e-23 | 52 |
| neural keel | 1.45e-23 | 52 |
| ecto-epithelium | 7.63e-23 | 73 |
| ectoderm-derived structure | 1.44e-22 | 95 |
| ectoderm | 1.44e-22 | 95 |
| presumptive ectoderm | 1.44e-22 | 95 |
| pre-chordal neural plate | 7.25e-22 | 49 |
| brain | 1.44e-21 | 47 |
| future brain | 1.44e-21 | 47 |
| regional part of brain | 6.66e-21 | 46 |
| anterior neural tube | 1.73e-19 | 40 |
| regional part of forebrain | 7.37e-19 | 39 |
| forebrain | 7.37e-19 | 39 |
| future forebrain | 7.37e-19 | 39 |
| gray matter | 1.01e-16 | 34 |
| brain grey matter | 7.04e-15 | 29 |
| regional part of telencephalon | 7.04e-15 | 29 |
| telencephalon | 7.04e-15 | 29 |
| structure with developmental contribution from neural crest | 5.39e-14 | 92 |
| cerebral cortex | 1.24e-10 | 21 |
| cerebral hemisphere | 1.24e-10 | 21 |
| pallium | 1.24e-10 | 21 |
| regional part of cerebral cortex | 5.22e-10 | 17 |
| occipital lobe | 2.14e-07 | 10 |
| visual cortex | 2.14e-07 | 10 |
| neocortex | 2.14e-07 | 10 |
| tube | 3.92e-07 | 114 |
