FFCP PHASE1:Mm9::chr1:88051327..88051396,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=78795 | |EntrezGene=78795 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=463 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D2I5 | |UniProt=Q9D2I5 | ||
|association_with_transcript=0bp_to_ENSMUST00000027434,ENSMUST00000113309,ENSMUST00000123618,ENSMUST00000131412,ENSMUST00000134858,ENSMUST00000135973,ENSMUST00000153389,ENSMUST00000153653,ENSMUST00000155168,NM_027456,NM_030184,uc007bva.1,uc007bvb.1,uc007bvc.1,uc007bvd.1,uc007bve.1,uc007bvf.1,uc007bvg.1,uc007bvh.1,uc007bvi.1_5end | |association_with_transcript=0bp_to_ENSMUST00000027434,ENSMUST00000113309,ENSMUST00000123618,ENSMUST00000131412,ENSMUST00000134858,ENSMUST00000135973,ENSMUST00000153389,ENSMUST00000153653,ENSMUST00000155168,NM_027456,NM_030184,uc007bva.1,uc007bvb.1,uc007bvc.1,uc007bvd.1,uc007bve.1,uc007bvf.1,uc007bvg.1,uc007bvh.1,uc007bvi.1_5end | ||
|cluster_id=chr1:88051327..88051396,+ | |||
|description=CAGE_peak_1_at_Armc9_5end | |description=CAGE_peak_1_at_Armc9_5end | ||
|id=chr1:88051327..88051396,+ | |id=chr1:88051327..88051396,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.50e-09!23;CL:0000337!2.50e-09!23;CL:0000221!2.47e-08!44;CL:0000133!2.47e-08!44;CL:0000540!2.74e-08!33;CL:0000047!2.74e-08!33;CL:0000031!2.74e-08!33;CL:0000404!2.74e-08!33;CL:0002319!4.15e-08!43;CL:0000393!4.41e-07!39;CL:0000211!4.41e-07!39 | |ontology_enrichment_celltype=CL:0000117!2.50e-09!23;CL:0000337!2.50e-09!23;CL:0000221!2.47e-08!44;CL:0000133!2.47e-08!44;CL:0000540!2.74e-08!33;CL:0000047!2.74e-08!33;CL:0000031!2.74e-08!33;CL:0000404!2.74e-08!33;CL:0002319!4.15e-08!43;CL:0000393!4.41e-07!39;CL:0000211!4.41e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.49e-09,23;CL:0000337,2.49e-09,23;CL:0000221,2.47e-08,44;CL:0000133,2.47e-08,44;CL:0000540,2.73e-08,33;CL:0000047,2.73e-08,33;CL:0000031,2.73e-08,33;CL:0000404,2.73e-08,33;CL:0002319,4.15e-08,43;CL:0000393,4.41e-07,39;CL:0000211,4.41e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.71e-26!73;UBERON:0005743!2.71e-26!73;UBERON:0000073!8.82e-25!75;UBERON:0001016!8.82e-25!75;UBERON:0000033!7.12e-24!63;UBERON:0002346!8.34e-24!71;UBERON:0003075!8.34e-24!71;UBERON:0007284!8.34e-24!71;UBERON:0001049!1.45e-23!52;UBERON:0005068!1.45e-23!52;UBERON:0006241!1.45e-23!52;UBERON:0007135!1.45e-23!52;UBERON:0000955!7.87e-23!50;UBERON:0006238!7.87e-23!50;UBERON:0002616!3.72e-22!49;UBERON:0003056!7.27e-22!49;UBERON:0004121!8.41e-21!102;UBERON:0000924!8.41e-21!102;UBERON:0006601!8.41e-21!102;UBERON:0003080!1.73e-19!40;UBERON:0002780!7.39e-19!39;UBERON:0001890!7.39e-19!39;UBERON:0006240!7.39e-19!39;UBERON:0002020!1.02e-16!34;UBERON:0000153!6.71e-15!94;UBERON:0002791!7.06e-15!29;UBERON:0003528!7.06e-15!29;UBERON:0001893!7.06e-15!29;UBERON:0007811!9.47e-14!86;UBERON:0000956!1.24e-10!21;UBERON:0001869!1.24e-10!21;UBERON:0000203!1.24e-10!21;UBERON:0002619!5.23e-10!17;UBERON:0000475!9.38e-09!200;UBERON:0002021!2.14e-07!10;UBERON:0000411!2.14e-07!10;UBERON:0001950!2.14e-07!10;UBERON:0000025!3.79e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.26e-27,64;UBERON:0003075,9.26e-27,64;UBERON:0007284,9.26e-27,64;UBERON:0001017,2.70e-26,73;UBERON:0001016,8.79e-25,75;UBERON:0000073,3.10e-24,54;UBERON:0001049,1.45e-23,52;UBERON:0005068,1.45e-23,52;UBERON:0006241,1.45e-23,52;UBERON:0007135,1.45e-23,52;UBERON:0010371,7.63e-23,73;UBERON:0004121,1.44e-22,95;UBERON:0000924,1.44e-22,95;UBERON:0006601,1.44e-22,95;UBERON:0003056,7.25e-22,49;UBERON:0000955,1.44e-21,47;UBERON:0006238,1.44e-21,47;UBERON:0002616,6.66e-21,46;UBERON:0003080,1.73e-19,40;UBERON:0002780,7.37e-19,39;UBERON:0001890,7.37e-19,39;UBERON:0006240,7.37e-19,39;UBERON:0002020,1.01e-16,34;UBERON:0003528,7.04e-15,29;UBERON:0002791,7.04e-15,29;UBERON:0001893,7.04e-15,29;UBERON:0010314,5.39e-14,92;UBERON:0000956,1.24e-10,21;UBERON:0001869,1.24e-10,21;UBERON:0000203,1.24e-10,21;UBERON:0002619,5.22e-10,17;UBERON:0002021,2.14e-07,10;UBERON:0000411,2.14e-07,10;UBERON:0001950,2.14e-07,10;UBERON:0000025,3.92e-07,114 | |||
|phase1_expression=12.1713123799643,0.697950815278722,0.454999239389536,1.51232105653415,0,2.35030980676646,3.73780224952841,4.77756296733832,0.281577444303333,0.468129052643987,1.71217968225505,2.31339261086476,4.45121897821135,3.84649770643589,14.3237197580735,15.1856450542369,20.2872944657163,5.0473946457318,3.97631857456642,3.81950686618227,31.5510606460469,5.06383851124515,9.40319240900167,1.59992422793407,0.68822784320151,0,1.7230479846363,2.15471232685889,1.33016393619462,0.504060259519861,1.99557459589774,6.35030673459631,6.1506478758457,15.8481681015439,6.06588401477677,4.3221007793208,4.69589519403449,1.25559489221072,0,0,0.588231488031014,0.683045484958446,0.485510353031154,13.3450627054112,12.4693625400003,15.9685674380663,3.9119567217402,18.7501634487184,16.2567775223509,16.5265414213141,12.8787507895334,25.8754615856949,2.68452169692378,4.35217285206807,7.05796978199174,3.8588915405392,4.87106847895886,6.70373719960675,19.4223802425214,22.7466121086974,16.4796164911607,12.5372476865579,6.22506357277798,4.94944844504769,1.97773272513395,7.104801149461,9.28760342607055,13.0634223809329,13.7907184370275,12.0155285115205,12.4091727197315,23.4233807211119,20.7616428494517,15.1888591026543,16.5812664861549,16.5459381589804,14.3150645299205,22.0899094887375,17.9719643909805,22.420668914133,21.7740591773735,20.8365348222704,17.3093459380856,24.1987922313622,23.2253336620751,12.6690291753677,22.9218406086556,14.7255562201987,6.28527404665428,6.2724394888632,16.232411367294,0.860423876981386,1.3599426674155,5.93673510801599,5.19821133958135,4.03224198387602,8.84799846830037,11.4188316127299,10.6512261887176,8.83348936275851,14.2251853974447,20.5322363862909,12.7402619853323,7.11066703153331,6.27824018932521,5.57391704045217,6.57181778519218,7.87868770061514,7.25026074212081,10.2425075954729,9.88866362566974,7.61163695780353,7.37969591219387,10.7013074792362,10.347806227942,8.67099480174761,6.42706916109372,5.63937491987655,7.96149496754887,7.44127509758082,11.9254419968613,11.1521308221101,3.72783522436244,21.6657789788545,21.154117388159,2.55457055208591,2.15667224110656,1.79970819298022,1.77898317902291,25.9137806170343,30.652540388848,26.0104508873629,29.0286614721102,29.407277592988,24.103413168909,26.120843353909,15.6832620329487,12.4406970610093,11.8779696463827,9.6803253707778,14.5734896118228,12.8745178482745,13.5046597354012,16.7282347797644,16.600905792924,17.4234659587396,17.4285207681096,25.8703370739016,14.4430555265004,13.615637772083,16.7153567955751,10.5213951565236,14.1804097105055,16.0195996600197,11.9353639116607,13.9323986772945,2.1066395619397,1.80143534980301,0.852490498186778,6.42089894860056,8.67746421930056,8.4629168886677,6.62885259638589,6.88674811115913,7.55908853148153,7.67362017676346,8.04820204198858,8.29033930806903,7.40519324610662,7.05920095540109,5.18840381093477,4.5321996101853,4.83010253640311,4.2946054003319,27.1274033647724,24.8000115834075,5.28670052774077,3.70230793328962,15.9966187901425,14.3986736553472,11.2114691350221,9.07575860805041,11.1189021922435,12.3646656973163,3.32170343081158,8.89374355509659,13.5721012752146,9.54991065797524,12.8676297498619,3.59527763461689,4.97117514711797,3.78368419183298,12.1387456609972,14.0525670509966,16.9061603509621,10.7935203758017,15.3222464862424,12.4841759404767,16.5047361894312,11.3659813944294,13.1878931386755,11.7227305725711,4.44678940630723,9.34332592010127,9.63139076054695,13.2668646307064,10.3458661908136,11.576503668116,10.9489116266011,4.89083433666378,5.5125977103512,5.76578967694971,8.62609239164127,5.58211421502755,3.74445207737473,3.78868316920668,4.4849353380478,3.37710464954357,9.23765950833023,14.2118558827864,11.2445833744998,13.0703716046895,12.6732734075791,11.2229192486017,10.7119638398706,7.80534591431195,11.1920952315396,9.30151696524855,12.2780171866265,11.1427054006702,11.7425787668809,10.4147322178688,6.03165135757089,4.89515115436839,2.45882136509518,5.79467167239938,22.6376331882787,22.504643825703,11.3115112309906,5.80683132570058,11.9893123378178,16.3984272604588,12.9254038639679,8.84184552424442,10.2487390077901,12.7384438854975,7.2865926301481,9.64444331107329,11.4633455604492,26.66966926301,14.9037089468682,10.8620018237026,14.1711654637611,19.7964147567043,6.63725691699814,11.1679092631291,9.06970670894253,9.05304382828311,10.0402643579463,11.6825356218692,11.1124166062335,10.9060118843252,9.9819265947722,6.95280867458795,7.37930260024991,11.3449097573006,26.8947288545492,14.5849486165361,15.6524007377133,16.0752776273694,15.6059405605201,13.0209236849512,20.5686275752651,19.1812917942198,6.33613611772018,7.20229040936989,7.05690873775878,10.5527201882547,6.94297034792394,9.71038091343309,8.23669173621642,9.19189038572343,4.37221254944776,24.1052892613663,11.2774781326583,11.3512777379772,11.4820606969221,16.1996873024034,21.734382207643,11.6676868335327,4.58941760983409,6.43776680688827,5.94259887359022,2.86401185404534,12.0207677560831,13.8257237646257,11.0165447638237,11.2907679847813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|phase1_expression=12.1713123799643,0.697950815278722,0.454999239389536,1.51232105653415,0,2.35030980676646,3.73780224952841,4.77756296733832,0.281577444303333,0.468129052643987,1.71217968225505,2.31339261086476,4.45121897821135,3.84649770643589,14.3237197580735,15.1856450542369,20.2872944657163,5.0473946457318,3.97631857456642,3.81950686618227,31.5510606460469,5.06383851124515,9.40319240900167,1.59992422793407,0.68822784320151,0,1.7230479846363,2.15471232685889,1.33016393619462,0.504060259519861,1.99557459589774,6.35030673459631,6.1506478758457,15.8481681015439,6.06588401477677,4.3221007793208,4.69589519403449,1.25559489221072,0,0,0.588231488031014,0.683045484958446,0.485510353031154,13.3450627054112,12.4693625400003,15.9685674380663,3.9119567217402,18.7501634487184,16.2567775223509,16.5265414213141,12.8787507895334,25.8754615856949,2.68452169692378,4.35217285206807,7.05796978199174,3.8588915405392,4.87106847895886,6.70373719960675,19.4223802425214,22.7466121086974,16.4796164911607,12.5372476865579,6.22506357277798,4.94944844504769,1.97773272513395,7.104801149461,9.28760342607055,13.0634223809329,13.7907184370275,12.0155285115205,12.4091727197315,23.4233807211119,20.7616428494517,15.1888591026543,16.5812664861549,16.5459381589804,14.3150645299205,22.0899094887375,17.9719643909805,22.420668914133,21.7740591773735,20.8365348222704,17.3093459380856,24.1987922313622,23.2253336620751,12.6690291753677,22.9218406086556,14.7255562201987,6.28527404665428,6.2724394888632,16.232411367294,0.860423876981386,1.3599426674155,5.93673510801599,5.19821133958135,4.03224198387602,8.84799846830037,11.4188316127299,10.6512261887176,8.83348936275851,14.2251853974447,20.5322363862909,12.7402619853323,7.11066703153331,6.27824018932521,5.57391704045217,6.57181778519218,7.87868770061514,7.25026074212081,10.2425075954729,9.88866362566974,7.61163695780353,7.37969591219387,10.7013074792362,10.347806227942,8.67099480174761,6.42706916109372,5.63937491987655,7.96149496754887,7.44127509758082,11.9254419968613,11.1521308221101,3.72783522436244,21.6657789788545,21.154117388159,2.55457055208591,2.15667224110656,1.79970819298022,1.77898317902291,25.9137806170343,30.652540388848,26.0104508873629,29.0286614721102,29.407277592988,24.103413168909,26.120843353909,15.6832620329487,12.4406970610093,11.8779696463827,9.6803253707778,14.5734896118228,12.8745178482745,13.5046597354012,16.7282347797644,16.600905792924,17.4234659587396,17.4285207681096,25.8703370739016,14.4430555265004,13.615637772083,16.7153567955751,10.5213951565236,14.1804097105055,16.0195996600197,11.9353639116607,13.9323986772945,2.1066395619397,1.80143534980301,0.852490498186778,6.42089894860056,8.67746421930056,8.4629168886677,6.62885259638589,6.88674811115913,7.55908853148153,7.67362017676346,8.04820204198858,8.29033930806903,7.40519324610662,7.05920095540109,5.18840381093477,4.5321996101853,4.83010253640311,4.2946054003319,27.1274033647724,24.8000115834075,5.28670052774077,3.70230793328962,15.9966187901425,14.3986736553472,11.2114691350221,9.07575860805041,11.1189021922435,12.3646656973163,3.32170343081158,8.89374355509659,13.5721012752146,9.54991065797524,12.8676297498619,3.59527763461689,4.97117514711797,3.78368419183298,12.1387456609972,14.0525670509966,16.9061603509621,10.7935203758017,15.3222464862424,12.4841759404767,16.5047361894312,11.3659813944294,13.1878931386755,11.7227305725711,4.44678940630723,9.34332592010127,9.63139076054695,13.2668646307064,10.3458661908136,11.576503668116,10.9489116266011,4.89083433666378,5.5125977103512,5.76578967694971,8.62609239164127,5.58211421502755,3.74445207737473,3.78868316920668,4.4849353380478,3.37710464954357,9.23765950833023,14.2118558827864,11.2445833744998,13.0703716046895,12.6732734075791,11.2229192486017,10.7119638398706,7.80534591431195,11.1920952315396,9.30151696524855,12.2780171866265,11.1427054006702,11.7425787668809,10.4147322178688,6.03165135757089,4.89515115436839,2.45882136509518,5.79467167239938,22.6376331882787,22.504643825703,11.3115112309906,5.80683132570058,11.9893123378178,16.3984272604588,12.9254038639679,8.84184552424442,10.2487390077901,12.7384438854975,7.2865926301481,9.64444331107329,11.4633455604492,26.66966926301,14.9037089468682,10.8620018237026,14.1711654637611,19.7964147567043,6.63725691699814,11.1679092631291,9.06970670894253,9.05304382828311,10.0402643579463,11.6825356218692,11.1124166062335,10.9060118843252,9.9819265947722,6.95280867458795,7.37930260024991,11.3449097573006,26.8947288545492,14.5849486165361,15.6524007377133,16.0752776273694,15.6059405605201,13.0209236849512,20.5686275752651,19.1812917942198,6.33613611772018,7.20229040936989,7.05690873775878,10.5527201882547,6.94297034792394,9.71038091343309,8.23669173621642,9.19189038572343,4.37221254944776,24.1052892613663,11.2774781326583,11.3512777379772,11.4820606969221,16.1996873024034,21.734382207643,11.6676868335327,4.58941760983409,6.43776680688827,5.94259887359022,2.86401185404534,12.0207677560831,13.8257237646257,11.0165447638237,11.2907679847813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| ||
|short_description=p1@Armc9 | |short_description=p1@Armc9 | ||
}} | }} |
Latest revision as of 17:31, 1 October 2015
Short description: | p1@Armc9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Armc9_5end |
Coexpression cluster: | MCL_coexpression_mm9:463 |
Association with transcript: | 0bp_to_ENSMUST00000027434, ENSMUST00000113309, ENSMUST00000123618, ENSMUST00000131412, ENSMUST00000134858, ENSMUST00000135973, ENSMUST00000153389, ENSMUST00000153653, ENSMUST00000155168, NM_027456, NM_030184, uc007bva.1, uc007bvb.1, uc007bvc.1, uc007bvd.1, uc007bve.1, uc007bvf.1, uc007bvg.1, uc007bvh.1, uc007bvi.1_5end |
EntrezGene: | Armc9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.49e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.49e-09 | 23 |
ectodermal cell | 2.47e-08 | 44 |
neurectodermal cell | 2.47e-08 | 44 |
neuron | 2.73e-08 | 33 |
neuronal stem cell | 2.73e-08 | 33 |
neuroblast | 2.73e-08 | 33 |
electrically signaling cell | 2.73e-08 | 33 |
neural cell | 4.15e-08 | 43 |
electrically responsive cell | 4.41e-07 | 39 |
electrically active cell | 4.41e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.26e-27 | 64 |
neural plate | 9.26e-27 | 64 |
presumptive neural plate | 9.26e-27 | 64 |
central nervous system | 2.70e-26 | 73 |
nervous system | 8.79e-25 | 75 |
regional part of nervous system | 3.10e-24 | 54 |
neural tube | 1.45e-23 | 52 |
neural rod | 1.45e-23 | 52 |
future spinal cord | 1.45e-23 | 52 |
neural keel | 1.45e-23 | 52 |
ecto-epithelium | 7.63e-23 | 73 |
ectoderm-derived structure | 1.44e-22 | 95 |
ectoderm | 1.44e-22 | 95 |
presumptive ectoderm | 1.44e-22 | 95 |
pre-chordal neural plate | 7.25e-22 | 49 |
brain | 1.44e-21 | 47 |
future brain | 1.44e-21 | 47 |
regional part of brain | 6.66e-21 | 46 |
anterior neural tube | 1.73e-19 | 40 |
regional part of forebrain | 7.37e-19 | 39 |
forebrain | 7.37e-19 | 39 |
future forebrain | 7.37e-19 | 39 |
gray matter | 1.01e-16 | 34 |
brain grey matter | 7.04e-15 | 29 |
regional part of telencephalon | 7.04e-15 | 29 |
telencephalon | 7.04e-15 | 29 |
structure with developmental contribution from neural crest | 5.39e-14 | 92 |
cerebral cortex | 1.24e-10 | 21 |
cerebral hemisphere | 1.24e-10 | 21 |
pallium | 1.24e-10 | 21 |
regional part of cerebral cortex | 5.22e-10 | 17 |
occipital lobe | 2.14e-07 | 10 |
visual cortex | 2.14e-07 | 10 |
neocortex | 2.14e-07 | 10 |
tube | 3.92e-07 | 114 |