FFCP PHASE1:Mm9::chr1:84692359..84692443,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=227325 | |EntrezGene=227325 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |MCL_coexpression_id=13 | ||
|TSSclassifier=NA | |||
|UniProt=Q8JZM4 | |UniProt=Q8JZM4 | ||
|association_with_transcript=352bp_to_ENSMUST00000049126,NM_152915,uc007bsw.1,uc007bsx.1_5end | |association_with_transcript=352bp_to_ENSMUST00000049126,NM_152915,uc007bsw.1,uc007bsx.1_5end | ||
|cluster_id=chr1:84692359..84692443,- | |||
|description=CAGE_peak_1_at_Dner_5end | |description=CAGE_peak_1_at_Dner_5end | ||
|id=chr1:84692359..84692443,- | |id=chr1:84692359..84692443,- | ||
|ontology_enrichment_celltype=CL:0000221!8.89e-20!44;CL:0000133!8.89e-20!44;CL:0002319!9.52e-20!43;CL:0000540!4.08e-16!33;CL:0000047!4.08e-16!33;CL:0000031!4.08e-16!33;CL:0000404!4.08e-16!33;CL:0000055!2.89e-15!50;CL:0000117!4.85e-15!23;CL:0000337!4.85e-15!23;CL:0000393!1.51e-12!39;CL:0000211!1.51e-12!39 | |ontology_enrichment_celltype=CL:0000221!8.89e-20!44;CL:0000133!8.89e-20!44;CL:0002319!9.52e-20!43;CL:0000540!4.08e-16!33;CL:0000047!4.08e-16!33;CL:0000031!4.08e-16!33;CL:0000404!4.08e-16!33;CL:0000055!2.89e-15!50;CL:0000117!4.85e-15!23;CL:0000337!4.85e-15!23;CL:0000393!1.51e-12!39;CL:0000211!1.51e-12!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.65e-21,44;CL:0000133,1.65e-21,44;CL:0002319,1.77e-21,43;CL:0000540,1.69e-17,33;CL:0000047,1.69e-17,33;CL:0000031,1.69e-17,33;CL:0000404,1.69e-17,33;CL:0000117,2.55e-16,23;CL:0000337,2.55e-16,23;CL:0000393,8.10e-14,39;CL:0000211,8.10e-14,39;CL:0002321,5.91e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.51e-38!75;UBERON:0001016!8.51e-38!75;UBERON:0001017!8.60e-38!73;UBERON:0005743!8.60e-38!73;UBERON:0004121!3.95e-33!102;UBERON:0000924!3.95e-33!102;UBERON:0006601!3.95e-33!102;UBERON:0002346!1.85e-30!71;UBERON:0003075!1.85e-30!71;UBERON:0007284!1.85e-30!71;UBERON:0001049!3.96e-28!52;UBERON:0005068!3.96e-28!52;UBERON:0006241!3.96e-28!52;UBERON:0007135!3.96e-28!52;UBERON:0000033!6.24e-27!63;UBERON:0000955!1.90e-26!50;UBERON:0006238!1.90e-26!50;UBERON:0002616!9.79e-26!49;UBERON:0003056!6.49e-22!49;UBERON:0003080!4.41e-20!40;UBERON:0002780!1.83e-19!39;UBERON:0001890!1.83e-19!39;UBERON:0006240!1.83e-19!39;UBERON:0002020!2.29e-19!34;UBERON:0002791!8.98e-16!29;UBERON:0003528!8.98e-16!29;UBERON:0001893!8.98e-16!29;UBERON:0007811!6.02e-12!86;UBERON:0000956!4.51e-11!21;UBERON:0001869!4.51e-11!21;UBERON:0000203!4.51e-11!21;UBERON:0000153!7.71e-11!94;UBERON:0002619!2.73e-09!17;UBERON:0003076!1.61e-08!12;UBERON:0003057!1.61e-08!12;UBERON:0000468!6.84e-08!333 | |ontology_enrichment_uberon=UBERON:0000073!8.51e-38!75;UBERON:0001016!8.51e-38!75;UBERON:0001017!8.60e-38!73;UBERON:0005743!8.60e-38!73;UBERON:0004121!3.95e-33!102;UBERON:0000924!3.95e-33!102;UBERON:0006601!3.95e-33!102;UBERON:0002346!1.85e-30!71;UBERON:0003075!1.85e-30!71;UBERON:0007284!1.85e-30!71;UBERON:0001049!3.96e-28!52;UBERON:0005068!3.96e-28!52;UBERON:0006241!3.96e-28!52;UBERON:0007135!3.96e-28!52;UBERON:0000033!6.24e-27!63;UBERON:0000955!1.90e-26!50;UBERON:0006238!1.90e-26!50;UBERON:0002616!9.79e-26!49;UBERON:0003056!6.49e-22!49;UBERON:0003080!4.41e-20!40;UBERON:0002780!1.83e-19!39;UBERON:0001890!1.83e-19!39;UBERON:0006240!1.83e-19!39;UBERON:0002020!2.29e-19!34;UBERON:0002791!8.98e-16!29;UBERON:0003528!8.98e-16!29;UBERON:0001893!8.98e-16!29;UBERON:0007811!6.02e-12!86;UBERON:0000956!4.51e-11!21;UBERON:0001869!4.51e-11!21;UBERON:0000203!4.51e-11!21;UBERON:0000153!7.71e-11!94;UBERON:0002619!2.73e-09!17;UBERON:0003076!1.61e-08!12;UBERON:0003057!1.61e-08!12;UBERON:0000468!6.84e-08!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.93e-41,75;UBERON:0001017,2.97e-41,73;UBERON:0004121,1.21e-34,95;UBERON:0000924,1.21e-34,95;UBERON:0006601,1.21e-34,95;UBERON:0002346,1.10e-33,64;UBERON:0003075,1.10e-33,64;UBERON:0007284,1.10e-33,64;UBERON:0000073,2.51e-32,54;UBERON:0001049,1.16e-30,52;UBERON:0005068,1.16e-30,52;UBERON:0006241,1.16e-30,52;UBERON:0007135,1.16e-30,52;UBERON:0010371,3.59e-27,73;UBERON:0000955,1.44e-26,47;UBERON:0006238,1.44e-26,47;UBERON:0002616,8.44e-26,46;UBERON:0003056,7.49e-24,49;UBERON:0003080,7.64e-22,40;UBERON:0002780,3.64e-21,39;UBERON:0001890,3.64e-21,39;UBERON:0006240,3.64e-21,39;UBERON:0002020,4.64e-21,34;UBERON:0010314,1.65e-20,92;UBERON:0003528,4.01e-17,29;UBERON:0002791,4.01e-17,29;UBERON:0001893,4.01e-17,29;UBERON:0000956,5.64e-12,21;UBERON:0001869,5.64e-12,21;UBERON:0000203,5.64e-12,21;UBERON:0002619,5.04e-10,17;UBERON:0003076,3.51e-09,12;UBERON:0003057,3.51e-09,12 | |||
|phase1_expression=11.8510146857548,0,0,0,0.500895729946347,1.6787927191189,1.40167584357315,0,0,0.234064526321993,0,0.0797721589953364,0,0,0.333109761815663,0,0,0,0,0,21.0056926673142,0,0,0,0.22940928106717,0,0,0,0.950117097281869,0.756090389279792,0.443461021310609,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0.304130793658544,0,43.0315239391422,44.0410815888502,42.838805633222,29.3589147602168,31.4969448657066,89.1265899062824,0.167782606057736,0,0,1.02903774414379,1.71920063963254,1.54701627683233,141.216889679999,163.98720357433,215.502677192101,10.8430250262122,8.00365316500025,0,0.988866362566974,0.7104801149461,57.5232212195337,122.949857702897,43.5496371695606,60.0776425576023,46.4818164586554,157.393692406496,165.872274254662,86.2335226473276,55.2069913065042,152.590318577263,148.656439349175,117.600038376458,120.120309006382,155.625819521629,108.321370025253,120.851901969168,129.540911536641,142.378940338015,134.768054539147,238.649154233671,187.788246974017,202.988996503752,3.63485727999283,4.38315048619356,0,0,0,1.07940638327563,0,0,6.31999890592883,0,0,0,6.19711047017394,0,0,0,0,0,0,2.96878087269556,0,3.85949561568544,1.90833859442749,3.34912026143355,2.53677046981664,4.97384713823654,6.93773372100658,1.13099932196708,0.494389935468748,1.44599356919912,0,0.647067399789637,1.32504911076236,0,0,224.562871307857,217.405681672366,2.04365644166873,0,0,0,114.589839144689,64.0500843946077,76.3978460846216,108.814024440365,82.8518081750271,125.296190869415,95.5601039469093,1.83310854930569,1.36847667671102,2.52722758433675,7.78634866779954,1.95180664444056,12.644615743841,18.9065236295617,14.7690721479001,21.2954242343656,20.2419678050063,21.4576949241779,27.4225572983357,1.07783996466421,1.51284864134255,2.28736461413134,5.2606975782618,1.39023624612799,1.39300866608867,0,0.199034266818493,0,0,0,0.207125772535502,0.469052119962192,0.180062061461015,0,0.393528463494808,0.154267112887378,0.232533944750408,0,0.233530684734339,0.16455984991348,0.656669856316381,0.56748166682099,0.146199987425332,0.439100230582101,0,74.2323518431369,89.8357266071153,0,0,0.639864751605702,0.696710015581316,1.9330119198314,2.21851877085677,1.55664630691409,1.14135375667535,2.84717436926707,1.4822905925161,1.00534083520108,2.38747766449381,3.70431765526328,2.69645822596266,1.29682829924817,1.1948476395262,1.32767530667157,1.37098215131675,1.1270773567308,0.814605311381257,0.387904974335251,0.631222379012867,0.569128834118316,0,0,0,0,0.166845105716094,0.589676985339609,0,0,0,0,0,0,0,0,0.372140947668503,0,0.252578877947112,0,0,0.739012760666419,0.568474235311454,0.488894929326078,1.01847051465113,0.234690248288502,0.670025029767263,0.238043640886014,1.36593553500459,0.315270288212382,1.7717175171902,0.478364305972461,0.81931657357869,1.72684981865896,0.289298117163023,1.50791283939272,3.80733978673097,0,0,99.7019163824188,92.0111739748795,0,0,9.4652465824877,17.1793047490521,21.7577631710127,4.54040716109849,9.80314165962534,15.286132662597,8.50102473517278,21.0424217696145,18.1832377855401,141.060057909173,1.56134093729095,0.178065603667255,1.30309567482861,0.494910368917606,0,1.45668381692989,1.81394134178851,0.377210159511796,0.885905678642318,0.614870295887855,1.03371317267288,0.727067458955011,0.712994756769443,1.8962205476149,0,1.03135543248187,119.834741225333,5.40183282093931,8.66703181344455,17.7899739076222,33.8719846256743,39.0627710548535,38.5044708208963,63.9376393140658,0.23467170806371,0,7.71849393192367,0,0.484393280087717,0.361877549568935,0.358117032009409,0.656563598980245,1.7488850197791,86.593616038908,0.170870880797853,0.206386867963223,0.370389054739423,0.376736914009382,0,0,0,0,0,2.86401185404534,0.316335993581135,3.04979200690273,2.05210147561422,1.67270636811575,2.18362563746178,3.77620169877498,2.47960367176008,2.35580347785627,1.68499465279331,0,0.56369293868419,0.149516546043979,0.330916980914195,1.75006069509643,2.19571699912143,2.02747350588934,2.11243029562357,5.9894017028217,5.66240459898839,1.20792060413003,2.88030006257865,0,1.01362607645082,0.513554785824136,0.129920822977795,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0.15241361331,0.100826185136841,0.0974578807397524,0,0,0.680191150845634,0.221985953374065,0.62799699626633,0.167884616364078,18.1598218390259,0.375364950902364,0.36630324853453,0.643105137237198,2.00628841614145,101.090579828455,86.0808192268421,87.6530135562277,86.7858570835622,55.491684101422,67.2300568676833,64.1271375220216,67.9985016868573,56.1896587140414,64.2022786572257,2.38710899443606,24.3405172774629,25.9515080746284,17.5036836289172,14.6729213839588,14.5236371675511,20.0022055021454,21.427645952845,23.7480215097943,24.2589323293246,19.5179060915485,20.1830185283102,16.4809053146993,20.3599984647484,18.8388338174412,18.0991602687568,18.3097234992872,15.6256468575601,19.3680373377554,20.1662520584124,14.4005086001874,13.665637074269,10.9680647375768,18.4589949123057,18.8218760830661,17.8536822651437,16.8293735042951,15.5211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| |phase1_expression=11.8510146857548,0,0,0,0.500895729946347,1.6787927191189,1.40167584357315,0,0,0.234064526321993,0,0.0797721589953364,0,0,0.333109761815663,0,0,0,0,0,21.0056926673142,0,0,0,0.22940928106717,0,0,0,0.950117097281869,0.756090389279792,0.443461021310609,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0.304130793658544,0,43.0315239391422,44.0410815888502,42.838805633222,29.3589147602168,31.4969448657066,89.1265899062824,0.167782606057736,0,0,1.02903774414379,1.71920063963254,1.54701627683233,141.216889679999,163.98720357433,215.502677192101,10.8430250262122,8.00365316500025,0,0.988866362566974,0.7104801149461,57.5232212195337,122.949857702897,43.5496371695606,60.0776425576023,46.4818164586554,157.393692406496,165.872274254662,86.2335226473276,55.2069913065042,152.590318577263,148.656439349175,117.600038376458,120.120309006382,155.625819521629,108.321370025253,120.851901969168,129.540911536641,142.378940338015,134.768054539147,238.649154233671,187.788246974017,202.988996503752,3.63485727999283,4.38315048619356,0,0,0,1.07940638327563,0,0,6.31999890592883,0,0,0,6.19711047017394,0,0,0,0,0,0,2.96878087269556,0,3.85949561568544,1.90833859442749,3.34912026143355,2.53677046981664,4.97384713823654,6.93773372100658,1.13099932196708,0.494389935468748,1.44599356919912,0,0.647067399789637,1.32504911076236,0,0,224.562871307857,217.405681672366,2.04365644166873,0,0,0,114.589839144689,64.0500843946077,76.3978460846216,108.814024440365,82.8518081750271,125.296190869415,95.5601039469093,1.83310854930569,1.36847667671102,2.52722758433675,7.78634866779954,1.95180664444056,12.644615743841,18.9065236295617,14.7690721479001,21.2954242343656,20.2419678050063,21.4576949241779,27.4225572983357,1.07783996466421,1.51284864134255,2.28736461413134,5.2606975782618,1.39023624612799,1.39300866608867,0,0.199034266818493,0,0,0,0.207125772535502,0.469052119962192,0.180062061461015,0,0.393528463494808,0.154267112887378,0.232533944750408,0,0.233530684734339,0.16455984991348,0.656669856316381,0.56748166682099,0.146199987425332,0.439100230582101,0,74.2323518431369,89.8357266071153,0,0,0.639864751605702,0.696710015581316,1.9330119198314,2.21851877085677,1.55664630691409,1.14135375667535,2.84717436926707,1.4822905925161,1.00534083520108,2.38747766449381,3.70431765526328,2.69645822596266,1.29682829924817,1.1948476395262,1.32767530667157,1.37098215131675,1.1270773567308,0.814605311381257,0.387904974335251,0.631222379012867,0.569128834118316,0,0,0,0,0.166845105716094,0.589676985339609,0,0,0,0,0,0,0,0,0.372140947668503,0,0.252578877947112,0,0,0.739012760666419,0.568474235311454,0.488894929326078,1.01847051465113,0.234690248288502,0.670025029767263,0.238043640886014,1.36593553500459,0.315270288212382,1.7717175171902,0.478364305972461,0.81931657357869,1.72684981865896,0.289298117163023,1.50791283939272,3.80733978673097,0,0,99.7019163824188,92.0111739748795,0,0,9.4652465824877,17.1793047490521,21.7577631710127,4.54040716109849,9.80314165962534,15.286132662597,8.50102473517278,21.0424217696145,18.1832377855401,141.060057909173,1.56134093729095,0.178065603667255,1.30309567482861,0.494910368917606,0,1.45668381692989,1.81394134178851,0.377210159511796,0.885905678642318,0.614870295887855,1.03371317267288,0.727067458955011,0.712994756769443,1.8962205476149,0,1.03135543248187,119.834741225333,5.40183282093931,8.66703181344455,17.7899739076222,33.8719846256743,39.0627710548535,38.5044708208963,63.9376393140658,0.23467170806371,0,7.71849393192367,0,0.484393280087717,0.361877549568935,0.358117032009409,0.656563598980245,1.7488850197791,86.593616038908,0.170870880797853,0.206386867963223,0.370389054739423,0.376736914009382,0,0,0,0,0,2.86401185404534,0.316335993581135,3.04979200690273,2.05210147561422,1.67270636811575,2.18362563746178,3.77620169877498,2.47960367176008,2.35580347785627,1.68499465279331,0,0.56369293868419,0.149516546043979,0.330916980914195,1.75006069509643,2.19571699912143,2.02747350588934,2.11243029562357,5.9894017028217,5.66240459898839,1.20792060413003,2.88030006257865,0,1.01362607645082,0.513554785824136,0.129920822977795,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0.15241361331,0.100826185136841,0.0974578807397524,0,0,0.680191150845634,0.221985953374065,0.62799699626633,0.167884616364078,18.1598218390259,0.375364950902364,0.36630324853453,0.643105137237198,2.00628841614145,101.090579828455,86.0808192268421,87.6530135562277,86.7858570835622,55.491684101422,67.2300568676833,64.1271375220216,67.9985016868573,56.1896587140414,64.2022786572257,2.38710899443606,24.3405172774629,25.9515080746284,17.5036836289172,14.6729213839588,14.5236371675511,20.0022055021454,21.427645952845,23.7480215097943,24.2589323293246,19.5179060915485,20.1830185283102,16.4809053146993,20.3599984647484,18.8388338174412,18.0991602687568,18.3097234992872,15.6256468575601,19.3680373377554,20.1662520584124,14.4005086001874,13.665637074269,10.9680647375768,18.4589949123057,18.8218760830661,17.8536822651437,16.8293735042951,15.5211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| ||
|short_description=p1@Dner | |short_description=p1@Dner | ||
}} | }} |
Latest revision as of 16:49, 1 October 2015
Short description: | p1@Dner |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dner_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 352bp_to_ENSMUST00000049126, NM_152915, uc007bsw.1, uc007bsx.1_5end |
EntrezGene: | Dner |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.65e-21 | 44 |
neurectodermal cell | 1.65e-21 | 44 |
neural cell | 1.77e-21 | 43 |
neuron | 1.69e-17 | 33 |
neuronal stem cell | 1.69e-17 | 33 |
neuroblast | 1.69e-17 | 33 |
electrically signaling cell | 1.69e-17 | 33 |
CNS neuron (sensu Vertebrata) | 2.55e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.55e-16 | 23 |
electrically responsive cell | 8.10e-14 | 39 |
electrically active cell | 8.10e-14 | 39 |
embryonic cell | 5.91e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.93e-41 | 75 |
central nervous system | 2.97e-41 | 73 |
ectoderm-derived structure | 1.21e-34 | 95 |
ectoderm | 1.21e-34 | 95 |
presumptive ectoderm | 1.21e-34 | 95 |
neurectoderm | 1.10e-33 | 64 |
neural plate | 1.10e-33 | 64 |
presumptive neural plate | 1.10e-33 | 64 |
regional part of nervous system | 2.51e-32 | 54 |
neural tube | 1.16e-30 | 52 |
neural rod | 1.16e-30 | 52 |
future spinal cord | 1.16e-30 | 52 |
neural keel | 1.16e-30 | 52 |
ecto-epithelium | 3.59e-27 | 73 |
brain | 1.44e-26 | 47 |
future brain | 1.44e-26 | 47 |
regional part of brain | 8.44e-26 | 46 |
pre-chordal neural plate | 7.49e-24 | 49 |
anterior neural tube | 7.64e-22 | 40 |
regional part of forebrain | 3.64e-21 | 39 |
forebrain | 3.64e-21 | 39 |
future forebrain | 3.64e-21 | 39 |
gray matter | 4.64e-21 | 34 |
structure with developmental contribution from neural crest | 1.65e-20 | 92 |
brain grey matter | 4.01e-17 | 29 |
regional part of telencephalon | 4.01e-17 | 29 |
telencephalon | 4.01e-17 | 29 |
cerebral cortex | 5.64e-12 | 21 |
cerebral hemisphere | 5.64e-12 | 21 |
pallium | 5.64e-12 | 21 |
regional part of cerebral cortex | 5.04e-10 | 17 |
posterior neural tube | 3.51e-09 | 12 |
chordal neural plate | 3.51e-09 | 12 |