FFCP PHASE1:Mm9::chr15:98593567..98593621,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11842 | |EntrezGene=11842 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2 | |MCL_coexpression_id=2 | ||
|TSSclassifier=NA | |||
|UniProt=P61205,Q3U344,A2A6T7 | |UniProt=P61205,Q3U344,A2A6T7 | ||
|association_with_transcript=-18bp_to_NM_007478,uc007xnp.1_5end | |association_with_transcript=-18bp_to_NM_007478,uc007xnp.1_5end | ||
|cluster_id=chr15:98593567..98593621,- | |||
|description=CAGE_peak_1_at_Arf3_5end | |description=CAGE_peak_1_at_Arf3_5end | ||
|id=chr15:98593567..98593621,- | |id=chr15:98593567..98593621,- | ||
|ontology_enrichment_celltype=CL:0000221!1.31e-09!44;CL:0000133!1.31e-09!44;CL:0000055!1.54e-09!50;CL:0002319!1.68e-09!43;CL:0002321!1.79e-09!70;CL:0000220!1.79e-09!70;CL:0000117!2.53e-09!23;CL:0000337!2.53e-09!23;CL:0000393!2.86e-07!39;CL:0000211!2.86e-07!39 | |ontology_enrichment_celltype=CL:0000221!1.31e-09!44;CL:0000133!1.31e-09!44;CL:0000055!1.54e-09!50;CL:0002319!1.68e-09!43;CL:0002321!1.79e-09!70;CL:0000220!1.79e-09!70;CL:0000117!2.53e-09!23;CL:0000337!2.53e-09!23;CL:0000393!2.86e-07!39;CL:0000211!2.86e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.31e-09,44;CL:0000133,1.31e-09,44;CL:0002319,1.68e-09,43;CL:0002321,1.79e-09,70;CL:0000117,2.53e-09,23;CL:0000337,2.53e-09,23;CL:0000393,2.86e-07,39;CL:0000211,2.86e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.90e-23!73;UBERON:0005743!3.90e-23!73;UBERON:0000073!8.00e-23!75;UBERON:0001016!8.00e-23!75;UBERON:0001049!7.66e-21!52;UBERON:0005068!7.66e-21!52;UBERON:0006241!7.66e-21!52;UBERON:0007135!7.66e-21!52;UBERON:0000955!4.02e-20!50;UBERON:0006238!4.02e-20!50;UBERON:0002616!1.80e-19!49;UBERON:0004121!9.33e-19!102;UBERON:0000924!9.33e-19!102;UBERON:0006601!9.33e-19!102;UBERON:0002020!7.47e-17!34;UBERON:0003080!3.18e-15!40;UBERON:0002780!1.10e-14!39;UBERON:0001890!1.10e-14!39;UBERON:0006240!1.10e-14!39;UBERON:0000033!2.60e-14!63;UBERON:0002791!2.88e-14!29;UBERON:0003528!2.88e-14!29;UBERON:0001893!2.88e-14!29;UBERON:0002346!6.48e-14!71;UBERON:0003075!6.48e-14!71;UBERON:0007284!6.48e-14!71;UBERON:0007811!7.67e-13!86;UBERON:0000153!2.91e-11!94;UBERON:0000956!1.78e-10!21;UBERON:0001869!1.78e-10!21;UBERON:0000203!1.78e-10!21;UBERON:0003056!3.12e-10!49;UBERON:0000064!3.88e-10!99;UBERON:0002619!4.62e-10!17;UBERON:0007023!8.05e-09!51;UBERON:0002021!5.41e-08!10;UBERON:0000411!5.41e-08!10;UBERON:0001950!5.41e-08!10 | |ontology_enrichment_uberon=UBERON:0001017!3.90e-23!73;UBERON:0005743!3.90e-23!73;UBERON:0000073!8.00e-23!75;UBERON:0001016!8.00e-23!75;UBERON:0001049!7.66e-21!52;UBERON:0005068!7.66e-21!52;UBERON:0006241!7.66e-21!52;UBERON:0007135!7.66e-21!52;UBERON:0000955!4.02e-20!50;UBERON:0006238!4.02e-20!50;UBERON:0002616!1.80e-19!49;UBERON:0004121!9.33e-19!102;UBERON:0000924!9.33e-19!102;UBERON:0006601!9.33e-19!102;UBERON:0002020!7.47e-17!34;UBERON:0003080!3.18e-15!40;UBERON:0002780!1.10e-14!39;UBERON:0001890!1.10e-14!39;UBERON:0006240!1.10e-14!39;UBERON:0000033!2.60e-14!63;UBERON:0002791!2.88e-14!29;UBERON:0003528!2.88e-14!29;UBERON:0001893!2.88e-14!29;UBERON:0002346!6.48e-14!71;UBERON:0003075!6.48e-14!71;UBERON:0007284!6.48e-14!71;UBERON:0007811!7.67e-13!86;UBERON:0000153!2.91e-11!94;UBERON:0000956!1.78e-10!21;UBERON:0001869!1.78e-10!21;UBERON:0000203!1.78e-10!21;UBERON:0003056!3.12e-10!49;UBERON:0000064!3.88e-10!99;UBERON:0002619!4.62e-10!17;UBERON:0007023!8.05e-09!51;UBERON:0002021!5.41e-08!10;UBERON:0000411!5.41e-08!10;UBERON:0001950!5.41e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.90e-23,73;UBERON:0001016,8.00e-23,75;UBERON:0000073,3.16e-22,54;UBERON:0001049,7.66e-21,52;UBERON:0005068,7.66e-21,52;UBERON:0006241,7.66e-21,52;UBERON:0007135,7.66e-21,52;UBERON:0000955,2.92e-18,47;UBERON:0006238,2.92e-18,47;UBERON:0004121,3.32e-18,95;UBERON:0000924,3.32e-18,95;UBERON:0006601,3.32e-18,95;UBERON:0002616,1.27e-17,46;UBERON:0002020,7.47e-17,34;UBERON:0003080,3.18e-15,40;UBERON:0002780,1.10e-14,39;UBERON:0001890,1.10e-14,39;UBERON:0006240,1.10e-14,39;UBERON:0003528,2.88e-14,29;UBERON:0002791,2.88e-14,29;UBERON:0001893,2.88e-14,29;UBERON:0010371,1.25e-13,73;UBERON:0002346,1.36e-13,64;UBERON:0003075,1.36e-13,64;UBERON:0007284,1.36e-13,64;UBERON:0000956,1.78e-10,21;UBERON:0001869,1.78e-10,21;UBERON:0000203,1.78e-10,21;UBERON:0003056,3.12e-10,49;UBERON:0002619,4.62e-10,17;UBERON:0007023,8.05e-09,51;UBERON:0011216,1.94e-08,194;UBERON:0002021,5.41e-08,10;UBERON:0000411,5.41e-08,10;UBERON:0001950,5.41e-08,10 | |||
|phase1_expression=74.9496604450436,165.065367813418,173.809709446803,168.775029909211,148.265136064119,83.9396359559449,101.154273377863,60.042345400333,144.730806371913,166.888007267581,79.4451372566343,84.3989442170659,65.0562773738582,59.3584532424992,23.6507930889121,17.2103977281352,19.5877325875881,36.2781490161973,37.0208970735495,40.3170169208129,104.858376756269,43.8866004307913,45.1875635210358,78.5562795915627,77.9991555628378,132.64758371057,136.551552782427,101.917893060426,114.204075093281,86.9503947671761,76.7187566867354,36.8317790606586,44.8997294936736,0,26.285497397366,31.4183479727551,27.5628630954198,71.5689088560112,47.6614560159518,46.593613213668,84.117102788435,79.2332762551797,82.5367600152961,91.9046771221714,99.6535233887828,133.254942069381,153.348703492216,122.530137885811,166.082754147261,157.682648149244,106.669653278526,133.689884859424,40.2678254538567,68.9094034910777,59.4886024482161,94.4142130251925,46.4184172700786,80.9605184875584,99.3373822820625,109.501132709311,110.286664210075,126.389010461786,110.272554717781,202.927386246955,241.283392466342,215.275474828668,199.833273715776,232.45207471954,67.8130064497444,82.6236342589947,77.60991073866,204.811755817527,204.082531839291,84.2736698598884,86.356769387431,92.8410974476121,231.243350098716,264.185102498253,234.403569749028,109.333732528331,118.750961395928,114.600941522487,183.144047344906,214.975317032102,218.043099577508,194.749494998094,173.551078894106,123.582832582174,61.2624904065459,65.8228288530102,46.0884537035668,33.5565312022741,59.1575060325743,66.3834925714515,43.5350199689938,52.4191457903883,67.1324328229774,95.7818412888685,99.4980397628987,112.008645119778,78.8723150749411,83.4122103193066,186.007824985851,291.537348292866,58.2360900320166,72.4609215258782,51.0579689464931,64.9706275601451,79.2349923960345,93.6669897499044,43.371331691534,76.1163695780353,73.3357281274266,83.8017881472581,86.7804658661502,73.0122895625415,146.586615866484,57.4059446972049,40.6920853896942,32.3533699894818,21.6424688091186,29.0925151881133,93.1958806090611,93.9826358407066,100.324972563645,78.9362300594547,19.7694955434768,24.5960119707297,17.4086211090099,195.476784423294,658.800868058822,129.42398267625,506.524069040294,542.116769540301,284.046256912919,345.573890334324,48.1700191011996,56.6051716275923,126.108656458404,61.4490219188504,46.973479909536,42.761791424626,48.7968371772496,48.9790657966074,42.8629944653365,49.8362371908066,44.4146174413115,67.2628763921441,54.3231342190762,50.3022173246399,45.7472922826267,43.839146485515,55.6094498451196,67.9091724718225,63.5866801500545,48.3653268368938,30.8973802417823,25.9921386185862,22.4489164522518,49.503059635985,48.3123683561058,44.1152050579486,52.7940760355019,45.6493017653977,40.1094493507183,33.9499559335595,39.1679166043444,31.6434077815029,27.3169350856378,28.8934736779208,21.9696473869269,21.4913981515238,27.4437644113813,20.2651692328161,539.814297964115,107.432415323973,95.1606094993338,73.2528069658018,40.3114793511592,36.6933941539493,45.7479487693431,61.7151585347428,60.042071838115,60.6819747299064,71.6538882932213,80.2083909505933,64.5931486616693,64.8598098854152,68.6273586659303,63.8161780144497,58.1411354162927,61.5346534355995,49.1239863468482,56.438765229206,71.0058734740407,61.9100036649755,63.228510816646,54.7760753343388,61.5923871590266,63.6199737792085,69.3934377058877,71.4469579107225,46.5430624526824,27.5294424431555,28.6976132865276,22.0364870137157,26.3718157805054,30.8706764483094,38.7031294707758,37.1128017311546,31.1299635408068,41.1842119782122,104.950790764969,58.0539878362865,55.5427058143918,45.211619152533,29.9593680581593,37.1481511449793,111.960433240962,44.7199731778344,44.4894385686731,43.284996872673,45.5299081679694,61.1397839662627,86.885928923395,93.2738836760278,70.4629094154674,66.2179422049837,72.3924649704991,87.5030100582041,82.716106313764,89.3931182033742,108.569724436276,76.1467957346193,117.53166125155,106.511584073627,162.15609588767,137.020461626286,76.7215544362841,18.935319540328,46.3797082541897,40.6056294068504,53.8558494331997,60.2201370840431,63.0520247653175,65.956831673798,54.2446340244358,68.387870751247,74.7093900318929,343.813808571334,90.5577743628754,63.0352236982083,52.6124878712051,72.7518242308881,58.4078608695836,45.8855402332915,50.4880340131134,63.1827017182259,82.0939262208548,60.2572889970098,65.8992147578964,65.7996050354285,58.4655700550943,41.4008152895919,42.1674434299995,58.7872596514665,157.28309785825,52.7579005511739,65.9729287292048,65.1584586496041,84.0592707464377,63.142561431133,67.958745508676,81.5966063627126,57.0252250594816,54.4408422120018,107.838386648876,88.5439178295748,60.3876955842687,52.5325576124238,59.5667996575651,50.5553971214789,68.7894774446448,165.028518789354,37.4207228947297,41.8965341965342,32.4090422896995,22.6042148405629,21.597687979922,29.2836061704349,32.4658801288264,28.8299991786735,26.6725949442538,68.7362844970882,50.4555909761911,51.236505715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| ||
|short_description=p1@Arf3 | |short_description=p1@Arf3 | ||
}} | }} |
Latest revision as of 13:17, 1 October 2015
Short description: | p1@Arf3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Arf3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -18bp_to_NM_007478, uc007xnp.1_5end |
EntrezGene: | Arf3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.31e-09 | 44 |
neurectodermal cell | 1.31e-09 | 44 |
neural cell | 1.68e-09 | 43 |
embryonic cell | 1.79e-09 | 70 |
CNS neuron (sensu Vertebrata) | 2.53e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.53e-09 | 23 |
electrically responsive cell | 2.86e-07 | 39 |
electrically active cell | 2.86e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.90e-23 | 73 |
nervous system | 8.00e-23 | 75 |
regional part of nervous system | 3.16e-22 | 54 |
neural tube | 7.66e-21 | 52 |
neural rod | 7.66e-21 | 52 |
future spinal cord | 7.66e-21 | 52 |
neural keel | 7.66e-21 | 52 |
brain | 2.92e-18 | 47 |
future brain | 2.92e-18 | 47 |
ectoderm-derived structure | 3.32e-18 | 95 |
ectoderm | 3.32e-18 | 95 |
presumptive ectoderm | 3.32e-18 | 95 |
regional part of brain | 1.27e-17 | 46 |
gray matter | 7.47e-17 | 34 |
anterior neural tube | 3.18e-15 | 40 |
regional part of forebrain | 1.10e-14 | 39 |
forebrain | 1.10e-14 | 39 |
future forebrain | 1.10e-14 | 39 |
brain grey matter | 2.88e-14 | 29 |
regional part of telencephalon | 2.88e-14 | 29 |
telencephalon | 2.88e-14 | 29 |
ecto-epithelium | 1.25e-13 | 73 |
neurectoderm | 1.36e-13 | 64 |
neural plate | 1.36e-13 | 64 |
presumptive neural plate | 1.36e-13 | 64 |
cerebral cortex | 1.78e-10 | 21 |
cerebral hemisphere | 1.78e-10 | 21 |
pallium | 1.78e-10 | 21 |
pre-chordal neural plate | 3.12e-10 | 49 |
regional part of cerebral cortex | 4.62e-10 | 17 |
adult organism | 8.05e-09 | 51 |
organ system subdivision | 1.94e-08 | 194 |
occipital lobe | 5.41e-08 | 10 |
visual cortex | 5.41e-08 | 10 |
neocortex | 5.41e-08 | 10 |