FFCP PHASE1:Mm9::chr6:51473978..51473996,+: Difference between revisions
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{{FFCP|EntrezGene=71982|HGNC=|MCL_coexpression_id=1379|UniProt=|association_with_transcript=0bp_to_ENSMUST00000155724_5end|description=CAGE_peak_3_at_Snx10_5end|id=chr6:51473978..51473996,+|ontology_enrichment_celltype=CL:0000540!2.10e-07!33;CL:0000047!2.10e-07!33;CL:0000031!2.10e-07!33;CL:0000404!2.10e-07!33;CL:0000393!8.33e-07!39;CL:0000211!8.33e-07!39;CL:0000117!9.69e-07!23;CL:0000337!9.69e-07!23|ontology_enrichment_celltype_v019_2=CL:0000540,2.02e-07,33;CL:0000047,2.02e-07,33;CL:0000031,2.02e-07,33;CL:0000404,2.02e-07,33;CL:0000393,8.04e-07,39;CL:0000211,8.04e-07,39;CL:0000117,9.37e-07,23;CL:0000337,9.37e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!2.97e-14!63;UBERON:0004121!4.59e-14!102;UBERON:0000924!4.59e-14!102;UBERON:0006601!4.59e-14!102;UBERON:0000073!5.55e-14!75;UBERON:0001016!5.55e-14!75;UBERON:0002346!8.24e-14!71;UBERON:0003075!8.24e-14!71;UBERON:0007284!8.24e-14!71;UBERON:0001017!2.13e-13!73;UBERON:0005743!2.13e-13!73;UBERON:0002020!2.84e-12!34;UBERON:0000955!3.62e-12!50;UBERON:0006238!3.62e-12!50;UBERON:0003056!4.90e-12!49;UBERON:0001049!8.16e-12!52;UBERON:0005068!8.16e-12!52;UBERON:0006241!8.16e-12!52;UBERON:0007135!8.16e-12!52;UBERON:0002616!1.14e-11!49;UBERON:0002791!2.08e-11!29;UBERON:0003528!2.08e-11!29;UBERON:0001893!2.08e-11!29;UBERON:0003080!5.12e-10!40;UBERON:0002780!1.59e-09!39;UBERON:0001890!1.59e-09!39;UBERON:0006240!1.59e-09!39;UBERON:0000956!3.96e-08!21;UBERON:0001869!3.96e-08!21;UBERON:0000203!3.96e-08!21;UBERON:0002021!9.88e-08!10;UBERON:0000411!9.88e-08!10;UBERON:0001950!9.88e-08!10;UBERON:0002619!4.32e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.92e-14,64;UBERON:0003075,1.92e-14,64;UBERON:0007284,1.92e-14,64;UBERON:0004121,2.28e-14,95;UBERON:0000924,2.28e-14,95;UBERON:0006601,2.28e-14,95;UBERON:0001016,4.20e-14,75;UBERON:0001017,1.63e-13,73;UBERON:0000073,9.39e-13,54;UBERON:0002020,2.65e-12,34;UBERON:0003056,4.57e-12,49;UBERON:0001049,7.46e-12,52;UBERON:0005068,7.46e-12,52;UBERON:0006241,7.46e-12,52;UBERON:0007135,7.46e-12,52;UBERON:0003528,1.95e-11,29;UBERON:0002791,1.95e-11,29;UBERON:0001893,1.95e-11,29;UBERON:0010371,5.53e-11,73;UBERON:0000955,8.93e-11,47;UBERON:0006238,8.93e-11,47;UBERON:0010314,1.29e-10,92;UBERON:0002616,2.72e-10,46;UBERON:0003080,4.84e-10,40;UBERON:0002780,1.50e-09,39;UBERON:0001890,1.50e-09,39;UBERON:0006240,1.50e-09,39;UBERON:0000956,3.80e-08,21;UBERON:0001869,3.80e-08,21;UBERON:0000203,3.80e-08,21;UBERON:0002021,9.48e-08,10;UBERON:0000411,9.48e-08,10;UBERON:0001950,9.48e-08,10;UBERON:0002619,4.17e-07,17|phase1_expression=2.24208385946712,0,0.454999239389536,0,0,0.16787927191189,0,0.129123323441576,0.281577444303333,0.468129052643987,0.34243593645101,0.319088635981346,0.342401459862411,0.0874204024189974,3.33109761815663,2.22722794128809,3.49780939064073,0.946386496074713,2.74228867211478,1.69755860719212,8.1641558545027,0.695036658406197,1.56719873483361,0.319984845586813,0.45881856213434,0.57423196411502,0,0.646413698057667,0.190023419456374,0,1.33038306393183,0,0,0,0,0.498703936075477,0.408338712524738,23.4377713212668,31.253413780952,31.4114246384279,32.9409633297368,25.2726829434625,31.558172947025,2.7697299954627,3.14268486780495,2.0190142737785,0,0.65407546914134,1.97717564461025,2.52758868796568,1.53985063787899,0,0.167782606057736,0,1.00828139742739,4.11615097657515,3.72493471920384,2.06268836910977,7.28339259094552,3.70293685490423,5.07065122804943,0.338844532069132,0.889294796111139,6.29929802096979,4.94433181283487,2.8419204597844,1.79760066311043,2.30530983192933,5.80661828927475,3.37514845829227,5.04779907243317,2.28520787523043,8.1721360152097,5.02212276781312,4.79227355091182,1.83843757322004,12.1127469099328,14.1732945274558,23.8090126547177,6.06676923558892,4.94033275453012,5.2091337055676,21.217907924105,19.1339287410771,23.6837284054056,5.00868595305235,7.83044244395066,5.96478226640962,4.16494063332512,7.55715601067855,1.44932244350839,1.72084775396277,2.03991400112325,1.07940638327563,0.649776417447669,0.448026887097336,2.80888840263504,0.681721290312231,2.33807404142582,0.70667914902068,2.67602497575693,3.84979432242953,2.54805239706646,0,1.73192832808971,1.77351905832569,2.02209778005913,1.82694207550496,7.76813650941515,4.30482203287992,2.60227990149204,2.13125834818499,3.45923245884088,2.56228488939458,3.29248379979973,2.76466500925286,14.5845030963281,11.1341504828332,12.3845477272982,5.17653919831709,4.41683036920787,10.1823803158397,3.72783522436244,11.1256702864388,12.3573557019938,1.53274233125155,4.19352935770721,4.79922184794726,6.86179226194549,23.5171303865572,26.5350349634803,9.1727677042391,42.7607827673,42.1930504595045,32.6227229958509,32.772735139687,2.64782346010822,5.97153458928446,3.0326731012041,7.36546495602659,2.99277018814219,2.98872735763515,5.58192602396583,4.9732589885786,5.30684693380357,6.79002717509704,5.43470002446427,9.05461797586555,2.15567992932842,1.51284864134255,0.879755620819744,1.31517439456545,1.946330744579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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=71982 | |||
|HGNC= | |||
|MCL_coexpression_id=1379 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000155724_5end | |||
|cluster_id=chr6:51473978..51473996,+ | |||
|description=CAGE_peak_3_at_Snx10_5end | |||
|id=chr6:51473978..51473996,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.10e-07!33;CL:0000047!2.10e-07!33;CL:0000031!2.10e-07!33;CL:0000404!2.10e-07!33;CL:0000393!8.33e-07!39;CL:0000211!8.33e-07!39;CL:0000117!9.69e-07!23;CL:0000337!9.69e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.02e-07,33;CL:0000047,2.02e-07,33;CL:0000031,2.02e-07,33;CL:0000404,2.02e-07,33;CL:0000393,8.04e-07,39;CL:0000211,8.04e-07,39;CL:0000117,9.37e-07,23;CL:0000337,9.37e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!2.97e-14!63;UBERON:0004121!4.59e-14!102;UBERON:0000924!4.59e-14!102;UBERON:0006601!4.59e-14!102;UBERON:0000073!5.55e-14!75;UBERON:0001016!5.55e-14!75;UBERON:0002346!8.24e-14!71;UBERON:0003075!8.24e-14!71;UBERON:0007284!8.24e-14!71;UBERON:0001017!2.13e-13!73;UBERON:0005743!2.13e-13!73;UBERON:0002020!2.84e-12!34;UBERON:0000955!3.62e-12!50;UBERON:0006238!3.62e-12!50;UBERON:0003056!4.90e-12!49;UBERON:0001049!8.16e-12!52;UBERON:0005068!8.16e-12!52;UBERON:0006241!8.16e-12!52;UBERON:0007135!8.16e-12!52;UBERON:0002616!1.14e-11!49;UBERON:0002791!2.08e-11!29;UBERON:0003528!2.08e-11!29;UBERON:0001893!2.08e-11!29;UBERON:0003080!5.12e-10!40;UBERON:0002780!1.59e-09!39;UBERON:0001890!1.59e-09!39;UBERON:0006240!1.59e-09!39;UBERON:0000956!3.96e-08!21;UBERON:0001869!3.96e-08!21;UBERON:0000203!3.96e-08!21;UBERON:0002021!9.88e-08!10;UBERON:0000411!9.88e-08!10;UBERON:0001950!9.88e-08!10;UBERON:0002619!4.32e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.92e-14,64;UBERON:0003075,1.92e-14,64;UBERON:0007284,1.92e-14,64;UBERON:0004121,2.28e-14,95;UBERON:0000924,2.28e-14,95;UBERON:0006601,2.28e-14,95;UBERON:0001016,4.20e-14,75;UBERON:0001017,1.63e-13,73;UBERON:0000073,9.39e-13,54;UBERON:0002020,2.65e-12,34;UBERON:0003056,4.57e-12,49;UBERON:0001049,7.46e-12,52;UBERON:0005068,7.46e-12,52;UBERON:0006241,7.46e-12,52;UBERON:0007135,7.46e-12,52;UBERON:0003528,1.95e-11,29;UBERON:0002791,1.95e-11,29;UBERON:0001893,1.95e-11,29;UBERON:0010371,5.53e-11,73;UBERON:0000955,8.93e-11,47;UBERON:0006238,8.93e-11,47;UBERON:0010314,1.29e-10,92;UBERON:0002616,2.72e-10,46;UBERON:0003080,4.84e-10,40;UBERON:0002780,1.50e-09,39;UBERON:0001890,1.50e-09,39;UBERON:0006240,1.50e-09,39;UBERON:0000956,3.80e-08,21;UBERON:0001869,3.80e-08,21;UBERON:0000203,3.80e-08,21;UBERON:0002021,9.48e-08,10;UBERON:0000411,9.48e-08,10;UBERON:0001950,9.48e-08,10;UBERON:0002619,4.17e-07,17 | |||
|phase1_expression=2.24208385946712,0,0.454999239389536,0,0,0.16787927191189,0,0.129123323441576,0.281577444303333,0.468129052643987,0.34243593645101,0.319088635981346,0.342401459862411,0.0874204024189974,3.33109761815663,2.22722794128809,3.49780939064073,0.946386496074713,2.74228867211478,1.69755860719212,8.1641558545027,0.695036658406197,1.56719873483361,0.319984845586813,0.45881856213434,0.57423196411502,0,0.646413698057667,0.190023419456374,0,1.33038306393183,0,0,0,0,0.498703936075477,0.408338712524738,23.4377713212668,31.253413780952,31.4114246384279,32.9409633297368,25.2726829434625,31.558172947025,2.7697299954627,3.14268486780495,2.0190142737785,0,0.65407546914134,1.97717564461025,2.52758868796568,1.53985063787899,0,0.167782606057736,0,1.00828139742739,4.11615097657515,3.72493471920384,2.06268836910977,7.28339259094552,3.70293685490423,5.07065122804943,0.338844532069132,0.889294796111139,6.29929802096979,4.94433181283487,2.8419204597844,1.79760066311043,2.30530983192933,5.80661828927475,3.37514845829227,5.04779907243317,2.28520787523043,8.1721360152097,5.02212276781312,4.79227355091182,1.83843757322004,12.1127469099328,14.1732945274558,23.8090126547177,6.06676923558892,4.94033275453012,5.2091337055676,21.217907924105,19.1339287410771,23.6837284054056,5.00868595305235,7.83044244395066,5.96478226640962,4.16494063332512,7.55715601067855,1.44932244350839,1.72084775396277,2.03991400112325,1.07940638327563,0.649776417447669,0.448026887097336,2.80888840263504,0.681721290312231,2.33807404142582,0.70667914902068,2.67602497575693,3.84979432242953,2.54805239706646,0,1.73192832808971,1.77351905832569,2.02209778005913,1.82694207550496,7.76813650941515,4.30482203287992,2.60227990149204,2.13125834818499,3.45923245884088,2.56228488939458,3.29248379979973,2.76466500925286,14.5845030963281,11.1341504828332,12.3845477272982,5.17653919831709,4.41683036920787,10.1823803158397,3.72783522436244,11.1256702864388,12.3573557019938,1.53274233125155,4.19352935770721,4.79922184794726,6.86179226194549,23.5171303865572,26.5350349634803,9.1727677042391,42.7607827673,42.1930504595045,32.6227229958509,32.772735139687,2.64782346010822,5.97153458928446,3.0326731012041,7.36546495602659,2.99277018814219,2.98872735763515,5.58192602396583,4.9732589885786,5.30684693380357,6.79002717509704,5.43470002446427,9.05461797586555,2.15567992932842,1.51284864134255,0.879755620819744,1.31517439456545,1.94633074457919,2.78601733217733,1.85203922767149,1.79130840136644,11.2354109970118,8.74982884190032,5.11494298912067,3.10688658803253,2.81431271977315,2.88099298337624,1.89395788468168,1.96764231747404,3.23960937063494,1.39520366850245,1.07309360559848,2.10177616260905,2.13927804887525,2.13417703302824,1.70244500046297,1.90059983652932,3.51280184465681,4.02619256281115,37.6419007929788,20.6838270882362,0.330418782983798,0.528901133327089,2.34617075588757,2.09013004674395,2.44848176511977,2.01683524623343,3.11329261382818,3.42406127002606,0.474529061544512,2.47048432086016,0.502670417600539,1.39269530428806,2.33956904542944,0,1.29682829924817,0.597423819763102,1.13800740571849,1.5994791765362,1.1270773567308,1.62921062276251,2.52138233317913,2.80543279561274,2.78240763346732,2.21415221969403,3.45397201251025,3.20832626196681,0.889357881261447,0.500535317148282,2.35870794135844,1.57403478669398,1.62288097110802,1.4470629585145,3.8193877767213,4.60313819921297,3.72911021582581,1.92192989231657,4.31304619582064,3.34926852901653,3.43241440426017,1.26289438973556,1.79397413521912,0.964887042726734,6.28160846566456,1.32643988239339,1.46668478797823,1.52770577197669,1.40814148973101,1.84256883185997,3.57065461329021,2.34160377429359,2.52216230569906,3.10050565508285,2.39182152986231,2.62181303545181,4.83517949224508,5.49666422609744,21.1107797514981,48.9515115436839,2.45882136509518,2.75936746304733,29.0596567877903,31.2955203201182,1.14754461763673,3.53459298086122,3.47059041357882,4.29482618726302,4.30846795465598,3.58453196928828,3.11918143715352,2.83076530788832,4.04810701674894,8.76767573733936,6.7198922250909,22.8138134659483,6.67118400478862,0.890328018336276,1.79175655288934,3.62934270539578,0,1.21390318077491,1.81394134178851,1.69744571780308,1.77181135728464,0.614870295887855,3.10113951801865,1.09060118843252,1.78248689192361,2.52829406348653,3.16255825724996,4.12542172992747,6.80879211507576,2.52085531643834,1.03486947026204,1.50035924522115,2.6601035046341,1.78368817602071,3.62007845324666,1.522324745573,11.7335854031855,3.81297727554876,5.95426674748397,2.30840754118072,1.29171541356724,1.5078231232039,1.07435109602823,0.492422699235184,1.7488850197791,31.5223013417866,7.00570611271196,4.12773735926445,5.18544676635193,3.39063222608444,1.91371918809435,5.49067615695654,8.32894306969891,8.39708713941948,6.77179871641677,3.81868247206045,1.89801596148681,2.84647253977588,2.16010681643603,2.09088296014469,1.74690050996942,2.56242258131159,1.90102948168273,2.35580347785627,0.777689839750757,6.83473244395618,1.69107881605257,2.54178128274764,1.489126414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| |||
|short_description=p3@Snx10 | |||
}} |
Latest revision as of 12:43, 1 October 2015
Short description: | p3@Snx10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Snx10_5end |
Coexpression cluster: | MCL_coexpression_mm9:1379 |
Association with transcript: | 0bp_to_ENSMUST00000155724_5end |
EntrezGene: | Snx10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.02e-07 | 33 |
neuronal stem cell | 2.02e-07 | 33 |
neuroblast | 2.02e-07 | 33 |
electrically signaling cell | 2.02e-07 | 33 |
electrically responsive cell | 8.04e-07 | 39 |
electrically active cell | 8.04e-07 | 39 |
CNS neuron (sensu Vertebrata) | 9.37e-07 | 23 |
neuroblast (sensu Vertebrata) | 9.37e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.92e-14 | 64 |
neural plate | 1.92e-14 | 64 |
presumptive neural plate | 1.92e-14 | 64 |
ectoderm-derived structure | 2.28e-14 | 95 |
ectoderm | 2.28e-14 | 95 |
presumptive ectoderm | 2.28e-14 | 95 |
nervous system | 4.20e-14 | 75 |
central nervous system | 1.63e-13 | 73 |
regional part of nervous system | 9.39e-13 | 54 |
gray matter | 2.65e-12 | 34 |
pre-chordal neural plate | 4.57e-12 | 49 |
neural tube | 7.46e-12 | 52 |
neural rod | 7.46e-12 | 52 |
future spinal cord | 7.46e-12 | 52 |
neural keel | 7.46e-12 | 52 |
brain grey matter | 1.95e-11 | 29 |
regional part of telencephalon | 1.95e-11 | 29 |
telencephalon | 1.95e-11 | 29 |
ecto-epithelium | 5.53e-11 | 73 |
brain | 8.93e-11 | 47 |
future brain | 8.93e-11 | 47 |
structure with developmental contribution from neural crest | 1.29e-10 | 92 |
regional part of brain | 2.72e-10 | 46 |
anterior neural tube | 4.84e-10 | 40 |
regional part of forebrain | 1.50e-09 | 39 |
forebrain | 1.50e-09 | 39 |
future forebrain | 1.50e-09 | 39 |
cerebral cortex | 3.80e-08 | 21 |
cerebral hemisphere | 3.80e-08 | 21 |
pallium | 3.80e-08 | 21 |
occipital lobe | 9.48e-08 | 10 |
visual cortex | 9.48e-08 | 10 |
neocortex | 9.48e-08 | 10 |
regional part of cerebral cortex | 4.17e-07 | 17 |