FFCP PHASE1:Mm9::chrX:10294577..10294617,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=68041 | |EntrezGene=68041 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3733 | |MCL_coexpression_id=3733 | ||
|TSSclassifier=NA | |||
|UniProt=F7D5Q6 | |UniProt=F7D5Q6 | ||
|association_with_transcript=0bp_to_ENSMUST00000156321_5end | |association_with_transcript=0bp_to_ENSMUST00000156321_5end | ||
|cluster_id=chrX:10294577..10294617,+ | |||
|description=CAGE_peak_2_at_Mid1ip1_5end | |description=CAGE_peak_2_at_Mid1ip1_5end | ||
|id=chrX:10294577..10294617,+ | |id=chrX:10294577..10294617,+ | ||
|ontology_enrichment_celltype=CL:0000221!1.11e-18!44;CL:0000133!1.11e-18!44;CL:0002319!2.01e-18!43;CL:0000055!1.13e-17!50;CL:0002321!3.31e-13!70;CL:0000220!3.31e-13!70;CL:0000393!6.00e-13!39;CL:0000211!6.00e-13!39;CL:0000540!9.45e-13!33;CL:0000047!9.45e-13!33;CL:0000031!9.45e-13!33;CL:0000404!9.45e-13!33;CL:0000117!1.35e-11!23;CL:0000337!1.35e-11!23;CL:0000144!3.49e-10!121;CL:0000012!3.49e-10!121;CL:0002371!1.38e-09!118;CL:0000723!3.66e-09!91;CL:0000048!3.66e-09!91;CL:0000548!2.56e-08!115;CL:0000004!2.56e-08!115;CL:0000255!2.56e-08!115;CL:0000034!4.67e-08!97;CL:0000333!8.18e-07!10;CL:0000095!8.18e-07!10;CL:0000243!8.18e-07!10;CL:0000123!8.18e-07!10;CL:0000125!8.18e-07!10;CL:0000030!8.18e-07!10;CL:0000339!8.18e-07!10 | |ontology_enrichment_celltype=CL:0000221!1.11e-18!44;CL:0000133!1.11e-18!44;CL:0002319!2.01e-18!43;CL:0000055!1.13e-17!50;CL:0002321!3.31e-13!70;CL:0000220!3.31e-13!70;CL:0000393!6.00e-13!39;CL:0000211!6.00e-13!39;CL:0000540!9.45e-13!33;CL:0000047!9.45e-13!33;CL:0000031!9.45e-13!33;CL:0000404!9.45e-13!33;CL:0000117!1.35e-11!23;CL:0000337!1.35e-11!23;CL:0000144!3.49e-10!121;CL:0000012!3.49e-10!121;CL:0002371!1.38e-09!118;CL:0000723!3.66e-09!91;CL:0000048!3.66e-09!91;CL:0000548!2.56e-08!115;CL:0000004!2.56e-08!115;CL:0000255!2.56e-08!115;CL:0000034!4.67e-08!97;CL:0000333!8.18e-07!10;CL:0000095!8.18e-07!10;CL:0000243!8.18e-07!10;CL:0000123!8.18e-07!10;CL:0000125!8.18e-07!10;CL:0000030!8.18e-07!10;CL:0000339!8.18e-07!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.11e-18,44;CL:0000133,1.11e-18,44;CL:0002319,2.01e-18,43;CL:0002321,3.31e-13,70;CL:0000393,6.00e-13,39;CL:0000211,6.00e-13,39;CL:0000540,9.45e-13,33;CL:0000047,9.45e-13,33;CL:0000031,9.45e-13,33;CL:0000404,9.45e-13,33;CL:0000117,1.35e-11,23;CL:0000337,1.35e-11,23;CL:0000723,3.62e-09,91;CL:0000048,3.62e-09,91;CL:0000034,4.67e-08,97;CL:0000333,8.18e-07,10;CL:0000095,8.18e-07,10;CL:0000243,8.18e-07,10;CL:0000123,8.18e-07,10;CL:0000125,8.18e-07,10;CL:0000030,8.18e-07,10;CL:0000339,8.18e-07,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.71e-26!75;UBERON:0001016!3.71e-26!75;UBERON:0001017!6.10e-25!73;UBERON:0005743!6.10e-25!73;UBERON:0004121!3.73e-20!102;UBERON:0000924!3.73e-20!102;UBERON:0006601!3.73e-20!102;UBERON:0001049!1.23e-16!52;UBERON:0005068!1.23e-16!52;UBERON:0006241!1.23e-16!52;UBERON:0007135!1.23e-16!52;UBERON:0000955!2.12e-15!50;UBERON:0006238!2.12e-15!50;UBERON:0002616!5.18e-15!49;UBERON:0002346!1.86e-13!71;UBERON:0003075!1.86e-13!71;UBERON:0007284!1.86e-13!71;UBERON:0000033!2.32e-13!63;UBERON:0002020!7.03e-13!34;UBERON:0003080!2.51e-10!40;UBERON:0002791!3.47e-10!29;UBERON:0003528!3.47e-10!29;UBERON:0001893!3.47e-10!29;UBERON:0002780!7.46e-10!39;UBERON:0001890!7.46e-10!39;UBERON:0006240!7.46e-10!39;UBERON:0003056!3.41e-08!49;UBERON:0003076!9.48e-08!12;UBERON:0003057!9.48e-08!12;UBERON:0000956!8.51e-07!21;UBERON:0001869!8.51e-07!21;UBERON:0000203!8.51e-07!21 | |ontology_enrichment_uberon=UBERON:0000073!3.71e-26!75;UBERON:0001016!3.71e-26!75;UBERON:0001017!6.10e-25!73;UBERON:0005743!6.10e-25!73;UBERON:0004121!3.73e-20!102;UBERON:0000924!3.73e-20!102;UBERON:0006601!3.73e-20!102;UBERON:0001049!1.23e-16!52;UBERON:0005068!1.23e-16!52;UBERON:0006241!1.23e-16!52;UBERON:0007135!1.23e-16!52;UBERON:0000955!2.12e-15!50;UBERON:0006238!2.12e-15!50;UBERON:0002616!5.18e-15!49;UBERON:0002346!1.86e-13!71;UBERON:0003075!1.86e-13!71;UBERON:0007284!1.86e-13!71;UBERON:0000033!2.32e-13!63;UBERON:0002020!7.03e-13!34;UBERON:0003080!2.51e-10!40;UBERON:0002791!3.47e-10!29;UBERON:0003528!3.47e-10!29;UBERON:0001893!3.47e-10!29;UBERON:0002780!7.46e-10!39;UBERON:0001890!7.46e-10!39;UBERON:0006240!7.46e-10!39;UBERON:0003056!3.41e-08!49;UBERON:0003076!9.48e-08!12;UBERON:0003057!9.48e-08!12;UBERON:0000956!8.51e-07!21;UBERON:0001869!8.51e-07!21;UBERON:0000203!8.51e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.71e-26,75;UBERON:0001017,6.10e-25,73;UBERON:0004121,7.31e-21,95;UBERON:0000924,7.31e-21,95;UBERON:0006601,7.31e-21,95;UBERON:0000073,7.74e-18,54;UBERON:0001049,1.23e-16,52;UBERON:0005068,1.23e-16,52;UBERON:0006241,1.23e-16,52;UBERON:0007135,1.23e-16,52;UBERON:0002346,2.72e-14,64;UBERON:0003075,2.72e-14,64;UBERON:0007284,2.72e-14,64;UBERON:0000955,1.27e-13,47;UBERON:0006238,1.27e-13,47;UBERON:0002616,3.02e-13,46;UBERON:0002020,7.03e-13,34;UBERON:0010371,1.05e-12,73;UBERON:0003080,2.51e-10,40;UBERON:0003528,3.47e-10,29;UBERON:0002791,3.47e-10,29;UBERON:0001893,3.47e-10,29;UBERON:0002780,7.46e-10,39;UBERON:0001890,7.46e-10,39;UBERON:0006240,7.46e-10,39;UBERON:0003056,3.41e-08,49;UBERON:0010314,3.78e-08,92;UBERON:0003076,9.47e-08,12;UBERON:0003057,9.47e-08,12;UBERON:0000956,8.51e-07,21;UBERON:0001869,8.51e-07,21;UBERON:0000203,8.51e-07,21 | |||
|phase1_expression=14.733693933641,5.23463111459042,5.91499011206397,13.3084252975005,15.0268718983904,11.7515490338323,11.6806320297763,4.9066862907799,2.956563165185,2.10658073689794,9.58820622062828,6.06268408364557,2.22560948910567,3.4968160967599,13.6575002344422,23.0821804824402,47.570207712714,10.567982539501,11.7918412900935,11.0341309467488,14.1171861650776,10.7234227296956,10.4479915655574,4.7997726838022,6.19405058881359,7.46501553349526,6.46142994238612,8.83432054012145,10.8313349090133,8.31699428207772,8.64748991555688,17.14582818341,7.99584223859941,0,11.554064790051,12.4675984018869,8.77928231928187,91.6584271313828,60.1628215283326,78.0050378520959,95.8817325490553,85.3806856198057,83.5077807213584,17.4996576986052,14.6996550268296,14.8672869250962,25.0365230191373,76.9628802022976,52.0656253080698,56.3846707315422,36.5364560442196,61.8136026769378,16.6104779997159,4.35217285206807,8.73843877770406,23.1533492432352,21.7765414353455,12.3761302146586,27.3127222160457,34.9134046319542,33.5930643858275,16.6033820713875,18.6751907183339,57.5935819060095,65.2651799294203,83.8366535636398,78.495228955822,107.196907184714,21.5674393601634,18.4958135514416,22.2944459032465,61.9862636156254,62.7266656302582,24.4981598429908,28.370259421398,40.4456266108409,91.3961812294926,54.6501807004603,62.2106459687786,26.509143833769,29.6419965271807,26.045668527838,70.0749327493466,66.9687505937699,58.5217288985183,60.9881171930492,46.8402829829049,34.6702969235059,45.2842636132441,48.7436562688767,19.7107852317141,7.74381489283248,11.5595126730318,5.39703191637817,4.54843492213368,3.13618820968135,15.0275529540974,23.519384515772,21.5622383820381,24.7337702157238,21.8307300653855,23.0987659345772,15.2883143823987,14.2213340630666,21.8655951421326,15.454951793981,18.704404465547,9.36307813696292,9.83963957859253,21.3756680253348,8.84775166507293,14.0054120023585,11.0695438682908,13.7157602902887,11.170927177892,20.7349875693965,5.93267922562497,18.3641183288288,25.6537060065464,7.44127509758082,11.4837589599405,10.6672555689749,24.2309289583559,41.2820923786281,33.0925796765259,12.0064815948038,15.4561510612637,23.9961092397363,19.3146745151058,46.5848888548999,38.8875512395833,20.8586224507355,29.2024857923024,15.0872119824895,60.8818970559511,38.6134206101263,12.9335992089902,14.4312085907708,9.85618757891331,28.409650544674,6.50602214813519,9.88579049063934,14.4049703844279,11.3028613376786,10.6136938676071,9.09607414022434,11.056803498048,17.3331258395141,3.01795190105979,4.34943984385984,1.93546236580344,4.60311038097907,5.83899223373756,5.57203466435466,7.81972118350185,7.36426787228425,34.4084461783485,29.852357225307,27.5638594413725,4.55676699578104,4.69052119962192,4.8616756594474,4.7348947117042,5.90292695242211,5.707883176833,5.58081467400979,7.24338183778972,4.32031766758527,7.5697530960201,11.1633875573785,11.9981838127866,11.2573990317506,12.0752563410078,12.4811969447146,29.8611726961061,21.3012547625119,10.5734010554815,12.164726066523,8.74481827194459,10.9151235774406,15.4640953586512,11.0925938542838,13.5650606745371,10.2721838100782,12.3377556001573,9.71723832871664,11.3100843960121,9.15199771389294,12.2827374885046,8.08937467788799,12.5360068927323,11.948476395262,7.39704813717019,6.85491075658373,10.1436962105772,9.57161240872977,8.92181440971078,9.18779240563173,10.4972651626267,11.2183712464498,12.8738956829927,12.4631135561019,6.52195779591728,8.67594549723689,8.64859578498093,9.89393294493356,17.2431103180227,14.2294524253926,14.7682994033223,11.5078454980324,8.43103179230184,7.4131581560782,2.87536413054709,7.81495990103857,9.67316786655138,4.54641980304801,3.76734568396016,7.71909634181387,32.1470550889892,6.44270800019648,13.6890580211302,13.9190970335654,16.8976978767722,21.6083072099942,30.9456733151818,27.5138443479496,21.438379598442,23.2537924131214,20.2507556195009,29.9869865929801,25.2120073524208,27.3386720719057,76.9035548090288,42.4246433378593,10.3270497333998,4.13905119457099,63.4174830451778,54.6206459519667,7.21313759657372,11.1087207969924,18.2994767261429,16.0079885161622,17.2338718186239,30.1100685420216,24.9534514972281,16.7015153165411,21.4549671887694,25.7185154961954,14.6256477840214,26.3483479465882,17.6005705658253,10.1497394090335,9.44744364250741,14.1874305756381,7.96470830039777,8.74010290157933,13.6045600634138,11.3163047853539,17.1275097870848,15.9866276930842,9.56184684722418,11.2695456138027,9.9819265947722,10.7452497698177,15.8127912862498,12.3762651897824,24.8520912200265,11.1637878299412,11.3835641728824,11.3598628566744,11.7044554203901,13.0209236849512,16.1258040190079,15.5277124048446,9.62154003061212,5.2958017715955,9.04166432025344,17.8077153176798,10.4951877352339,12.1228979105593,14.2053089363732,11.4898629821543,15.7399651780119,78.6203280524561,18.6249260069659,11.7640514739037,12.222838806401,16.1996873024034,14.7629765938707,14.6418030852174,19.2075625893056,16.5142713741916,22.9411956515344,22.9120948323627,8.38290382990009,12.809126428991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| ||
|short_description=p2@Mid1ip1 | |short_description=p2@Mid1ip1 | ||
}} | }} |
Latest revision as of 12:16, 1 October 2015
Short description: | p2@Mid1ip1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Mid1ip1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3733 |
Association with transcript: | 0bp_to_ENSMUST00000156321_5end |
EntrezGene: | Mid1ip1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.11e-18 | 44 |
neurectodermal cell | 1.11e-18 | 44 |
neural cell | 2.01e-18 | 43 |
embryonic cell | 3.31e-13 | 70 |
electrically responsive cell | 6.00e-13 | 39 |
electrically active cell | 6.00e-13 | 39 |
neuron | 9.45e-13 | 33 |
neuronal stem cell | 9.45e-13 | 33 |
neuroblast | 9.45e-13 | 33 |
electrically signaling cell | 9.45e-13 | 33 |
CNS neuron (sensu Vertebrata) | 1.35e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.35e-11 | 23 |
somatic stem cell | 3.62e-09 | 91 |
multi fate stem cell | 3.62e-09 | 91 |
stem cell | 4.67e-08 | 97 |
migratory neural crest cell | 8.18e-07 | 10 |
neuron associated cell | 8.18e-07 | 10 |
glial cell (sensu Vertebrata) | 8.18e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 8.18e-07 | 10 |
glial cell | 8.18e-07 | 10 |
glioblast | 8.18e-07 | 10 |
glioblast (sensu Vertebrata) | 8.18e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.71e-26 | 75 |
central nervous system | 6.10e-25 | 73 |
ectoderm-derived structure | 7.31e-21 | 95 |
ectoderm | 7.31e-21 | 95 |
presumptive ectoderm | 7.31e-21 | 95 |
regional part of nervous system | 7.74e-18 | 54 |
neural tube | 1.23e-16 | 52 |
neural rod | 1.23e-16 | 52 |
future spinal cord | 1.23e-16 | 52 |
neural keel | 1.23e-16 | 52 |
neurectoderm | 2.72e-14 | 64 |
neural plate | 2.72e-14 | 64 |
presumptive neural plate | 2.72e-14 | 64 |
brain | 1.27e-13 | 47 |
future brain | 1.27e-13 | 47 |
regional part of brain | 3.02e-13 | 46 |
gray matter | 7.03e-13 | 34 |
ecto-epithelium | 1.05e-12 | 73 |
anterior neural tube | 2.51e-10 | 40 |
brain grey matter | 3.47e-10 | 29 |
regional part of telencephalon | 3.47e-10 | 29 |
telencephalon | 3.47e-10 | 29 |
regional part of forebrain | 7.46e-10 | 39 |
forebrain | 7.46e-10 | 39 |
future forebrain | 7.46e-10 | 39 |
pre-chordal neural plate | 3.41e-08 | 49 |
structure with developmental contribution from neural crest | 3.78e-08 | 92 |
posterior neural tube | 9.47e-08 | 12 |
chordal neural plate | 9.47e-08 | 12 |
cerebral cortex | 8.51e-07 | 21 |
cerebral hemisphere | 8.51e-07 | 21 |
pallium | 8.51e-07 | 21 |