FFCP PHASE1:Mm9::chr4:91043124..91043168,-: Difference between revisions
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{{FFCP|EntrezGene=15569|HGNC=|MCL_coexpression_id=13|UniProt=Q3UR02,B1AXZ0,B1AXZ4|association_with_transcript=0bp_to_ENSMUST00000107109,ENSMUST00000107111,ENSMUST00000107120_5end|description=CAGE_peak_1_at_Elavl2_5end|id=chr4:91043124..91043168,-|ontology_enrichment_celltype=CL:0000540!1.94e-16!33;CL:0000047!1.94e-16!33;CL:0000031!1.94e-16!33;CL:0000404!1.94e-16!33;CL:0000117!1.39e-15!23;CL:0000337!1.39e-15!23;CL:0000393!3.81e-12!39;CL:0000211!3.81e-12!39;CL:0000221!4.99e-12!44;CL:0000133!4.99e-12!44;CL:0002319!5.70e-12!43;CL:0000055!1.46e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.19e-18,33;CL:0000047,3.19e-18,33;CL:0000031,3.19e-18,33;CL:0000404,3.19e-18,33;CL:0000117,2.90e-17,23;CL:0000337,2.90e-17,23;CL:0000393,3.49e-14,39;CL:0000211,3.49e-14,39;CL:0000221,1.65e-12,44;CL:0000133,1.65e-12,44;CL:0002319,1.95e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.12e-27!75;UBERON:0001016!6.12e-27!75;UBERON:0001017!9.37e-27!73;UBERON:0005743!9.37e-27!73;UBERON:0002346!1.92e-26!71;UBERON:0003075!1.92e-26!71;UBERON:0007284!1.92e-26!71;UBERON:0004121!1.51e-23!102;UBERON:0000924!1.51e-23!102;UBERON:0006601!1.51e-23!102;UBERON:0001049!1.10e-22!52;UBERON:0005068!1.10e-22!52;UBERON:0006241!1.10e-22!52;UBERON:0007135!1.10e-22!52;UBERON:0000033!5.57e-22!63;UBERON:0000955!1.33e-21!50;UBERON:0006238!1.33e-21!50;UBERON:0002616!4.35e-21!49;UBERON:0003056!2.83e-20!49;UBERON:0003080!2.91e-18!40;UBERON:0002020!5.79e-18!34;UBERON:0002780!1.29e-17!39;UBERON:0001890!1.29e-17!39;UBERON:0006240!1.29e-17!39;UBERON:0002791!3.78e-15!29;UBERON:0003528!3.78e-15!29;UBERON:0001893!3.78e-15!29;UBERON:0007811!1.20e-11!86;UBERON:0000153!2.68e-11!94;UBERON:0000956!2.27e-10!21;UBERON:0001869!2.27e-10!21;UBERON:0000203!2.27e-10!21;UBERON:0000468!3.96e-08!333;UBERON:0002619!6.63e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.10e-29,75;UBERON:0001017,8.34e-29,73;UBERON:0002346,5.30e-28,64;UBERON:0003075,5.30e-28,64;UBERON:0007284,5.30e-28,64;UBERON:0000073,2.74e-26,54;UBERON:0004121,6.40e-25,95;UBERON:0000924,6.40e-25,95;UBERON:0006601,6.40e-25,95;UBERON:0001049,1.02e-24,52;UBERON:0005068,1.02e-24,52;UBERON:0006241,1.02e-24,52;UBERON:0007135,1.02e-24,52;UBERON:0010371,1.43e-22,73;UBERON:0003056,8.28e-22,49;UBERON:0000955,3.16e-21,47;UBERON:0006238,3.16e-21,47;UBERON:0002616,1.15e-20,46;UBERON:0003080,1.56e-19,40;UBERON:0002020,3.78e-19,34;UBERON:0002780,8.17e-19,39;UBERON:0001890,8.17e-19,39;UBERON:0006240,8.17e-19,39;UBERON:0010314,2.41e-18,92;UBERON:0003528,5.16e-16,29;UBERON:0002791,5.16e-16,29;UBERON:0001893,5.16e-16,29;UBERON:0000956,1.03e-10,21;UBERON:0001869,1.03e-10,21;UBERON:0000203,1.03e-10,21;UBERON:0002619,5.35e-08,17;UBERON:0002021,9.08e-07,10;UBERON:0000411,9.08e-07,10;UBERON:0001950,9.08e-07,10|phase1_expression=4.00372117761985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.99406927420056,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0.332469290716985,0.204169356262369,0,0,0,0,0,0,1.51076181570693,1.21652317463417,0,0,2.61630187656536,0.439372365468944,0.194429899074283,0.419959264876088,0,0,0,0,0,0,0,65.5505333185097,69.8268092639083,74.7921056137291,0,0,0,0,0,0.599200221036809,0,93.6317199145553,62.3727435092411,71.3001618981185,21.7094748146891,20.0990372265968,70.1872279501687,43.3221529002428,53.3146896233812,63.8672109796454,55.6716794051418,71.4270379641532,69.1084147706216,58.5520919055422,74.4906119896167,61.4202597803038,55.7134983931363,48.7426410408024,50.3814881159972,57.9452740852349,76.9829711258491,2.34751199332871,5.97015324843606,0,0,0,0,0,0,1.82577746171277,0.170430322578058,0,0,3.23939865486365,1.28326477414318,2.54805239706646,7.11066703153331,0.216491041011214,0,0,1.02765491747154,0,1.48442139064825,10.0621489524359,14.3098774806706,8.76338889573022,11.6056433225519,7.87844337809222,0.753999547978053,0,0.144599356919912,0,0.647067399789637,0,0,0,11.4184510834503,12.7762491156208,0,0,0,0,61.4141621559773,26.992535566299,42.596825366261,40.848715245185,34.2658712822643,74.3881199523225,43.4806585021591,0.611036183101898,0,0,1.89397670297827,9.36867189331467,16.0931473103431,21.2473313170312,20.1944455899858,9.66118287948856,12.811372028485,10.1197862524507,6.46758426847539,1.5089759505299,3.21480336285293,3.51902248327898,1.31517439456545,1.94633074457919,1.0447564995665,0.411564272815887,2.58744546864041,0,0,0,1.03562886267751,2.57978665979206,0.900310307305074,1.18372367792605,0.590292695242212,1.07986979021165,0.465067889500816,0,0.350296027101508,0.329119699826961,0.492502392237286,0.243206428637567,0.146199987425332,0.658650345873152,0.402619256281115,30.2817525932343,78.2075054082562,0,0,4.90562976231038,5.34144345279009,4.63922860759536,2.21851877085677,2.00140239460383,1.52180500890047,0,0.658795818896044,1.00534083520108,0,0.58489226135736,0,0,0.199141273254367,1.89667900953082,4.45569199177942,1.1270773567308,1.83286195060783,0.581857461502877,1.05203729835478,0,0,0,0,0,0.500535317148282,0.393117990226406,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0.179397413521912,0,0.554259570499814,5.11626811780309,2.28150967018836,1.52770577197669,0.469380496577004,0.837531287209079,0.238043640886014,0.195133647857799,0.788175720530955,0.664394068946325,0.478364305972461,1.14704320301017,0.172684981865896,0.289298117163023,0,0,0,0,78.6697890940181,64.9352743720806,7.70494243270374,0.252470927204373,7.88770548540642,10.1514073517126,11.8482868753039,5.73525115086125,12.0311284004493,9.34152551603147,7.69140333182299,10.8134667427185,8.30104333687699,27.9549545286972,0.99358059645788,1.06839362200353,0.81443479676788,0.164970122972535,0,2.6705869977048,1.81394134178851,1.32023555829129,0.295301892880773,1.53717573971964,1.55056975900933,0.363533729477506,0,0.632073515871632,1.05418608574999,1.03135543248187,13.2771446243977,10.8036656418786,3.88076051348264,9.21649250635847,11.8817956540323,10.8804978737263,13.3284706687718,4.26250928760439,0.23467170806371,0.21183207086382,3.30792597082443,0.32977250588296,0,0.120625849856312,0,0,0,63.0446026835733,0,0.82554747185289,0.740778109478847,0,0,0,0,0,0,0,3.95419991976419,4.87966721104437,3.67218158794124,1.88179466413022,2.40198820120795,1.34864346384821,0.909188012978695,0.26175594198403,0,0,0.56369293868419,2.24274819065968,2.15096037594227,1.16670713006429,2.58319646955462,3.54807863530634,2.58185925020659,0.39061315453185,1.04859344425711,0,0.288030006257865,0,0.608175645870493,0.718976700153791,0.129920822977795,0.179026695667481,0.39736270956253,0,0.295379054349154,0,0,0.100826185136841,0.0974578807397524,0,0.116876902181569,0,0.221985953374065,0.179427713218951,0.167884616364078,1.54551675225752,0,0.549454872801795,1.07184189539533,0,31.6261031865557,39.5879703396172,45.2587455617123,41.244763762485,41.1049511862385,25.6833925112498,18.9006300064906,35.1250538514892,35.7982503097522,31.0656187051092,29.0604573235695,48.2820096815248,36.1955244198764,23.3382448385562,28.0881637921496,19.8550989126015,20.224452229947,15.0405591784393,21.1806678330598,20.2157769411038,19.010947491768,20.5602712110823,17.0427543595186,19.079495416651,16.8285924039947,21.9095097990214,14.6014250690518,15.8185560780238,14.4230065281157,20.9022466590844,19.8864166383541,17.5701048097744,16.4520971063651,19.912459078629,18.0690010397435,19.0382867756272,17.0123014771678,17.0995312434598,16.4322977753493,17.9565526930476,15.4225523561426,14.0861409797056,17.5969348562966,17.9726735775721,14.0821826016233,27.9787847290499,15.2055545489515,8.37997110788363,4.20834330551455,2.20591419119516,3.70988536992674|short_description=p1@Elavl2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=15569 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UR02,B1AXZ0,B1AXZ4 | |||
|association_with_transcript=0bp_to_ENSMUST00000107109,ENSMUST00000107111,ENSMUST00000107120_5end | |||
|cluster_id=chr4:91043124..91043168,- | |||
|description=CAGE_peak_1_at_Elavl2_5end | |||
|id=chr4:91043124..91043168,- | |||
|ontology_enrichment_celltype=CL:0000540!1.94e-16!33;CL:0000047!1.94e-16!33;CL:0000031!1.94e-16!33;CL:0000404!1.94e-16!33;CL:0000117!1.39e-15!23;CL:0000337!1.39e-15!23;CL:0000393!3.81e-12!39;CL:0000211!3.81e-12!39;CL:0000221!4.99e-12!44;CL:0000133!4.99e-12!44;CL:0002319!5.70e-12!43;CL:0000055!1.46e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.19e-18,33;CL:0000047,3.19e-18,33;CL:0000031,3.19e-18,33;CL:0000404,3.19e-18,33;CL:0000117,2.90e-17,23;CL:0000337,2.90e-17,23;CL:0000393,3.49e-14,39;CL:0000211,3.49e-14,39;CL:0000221,1.65e-12,44;CL:0000133,1.65e-12,44;CL:0002319,1.95e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.12e-27!75;UBERON:0001016!6.12e-27!75;UBERON:0001017!9.37e-27!73;UBERON:0005743!9.37e-27!73;UBERON:0002346!1.92e-26!71;UBERON:0003075!1.92e-26!71;UBERON:0007284!1.92e-26!71;UBERON:0004121!1.51e-23!102;UBERON:0000924!1.51e-23!102;UBERON:0006601!1.51e-23!102;UBERON:0001049!1.10e-22!52;UBERON:0005068!1.10e-22!52;UBERON:0006241!1.10e-22!52;UBERON:0007135!1.10e-22!52;UBERON:0000033!5.57e-22!63;UBERON:0000955!1.33e-21!50;UBERON:0006238!1.33e-21!50;UBERON:0002616!4.35e-21!49;UBERON:0003056!2.83e-20!49;UBERON:0003080!2.91e-18!40;UBERON:0002020!5.79e-18!34;UBERON:0002780!1.29e-17!39;UBERON:0001890!1.29e-17!39;UBERON:0006240!1.29e-17!39;UBERON:0002791!3.78e-15!29;UBERON:0003528!3.78e-15!29;UBERON:0001893!3.78e-15!29;UBERON:0007811!1.20e-11!86;UBERON:0000153!2.68e-11!94;UBERON:0000956!2.27e-10!21;UBERON:0001869!2.27e-10!21;UBERON:0000203!2.27e-10!21;UBERON:0000468!3.96e-08!333;UBERON:0002619!6.63e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.10e-29,75;UBERON:0001017,8.34e-29,73;UBERON:0002346,5.30e-28,64;UBERON:0003075,5.30e-28,64;UBERON:0007284,5.30e-28,64;UBERON:0000073,2.74e-26,54;UBERON:0004121,6.40e-25,95;UBERON:0000924,6.40e-25,95;UBERON:0006601,6.40e-25,95;UBERON:0001049,1.02e-24,52;UBERON:0005068,1.02e-24,52;UBERON:0006241,1.02e-24,52;UBERON:0007135,1.02e-24,52;UBERON:0010371,1.43e-22,73;UBERON:0003056,8.28e-22,49;UBERON:0000955,3.16e-21,47;UBERON:0006238,3.16e-21,47;UBERON:0002616,1.15e-20,46;UBERON:0003080,1.56e-19,40;UBERON:0002020,3.78e-19,34;UBERON:0002780,8.17e-19,39;UBERON:0001890,8.17e-19,39;UBERON:0006240,8.17e-19,39;UBERON:0010314,2.41e-18,92;UBERON:0003528,5.16e-16,29;UBERON:0002791,5.16e-16,29;UBERON:0001893,5.16e-16,29;UBERON:0000956,1.03e-10,21;UBERON:0001869,1.03e-10,21;UBERON:0000203,1.03e-10,21;UBERON:0002619,5.35e-08,17;UBERON:0002021,9.08e-07,10;UBERON:0000411,9.08e-07,10;UBERON:0001950,9.08e-07,10 | |||
|phase1_expression=4.00372117761985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.99406927420056,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0.332469290716985,0.204169356262369,0,0,0,0,0,0,1.51076181570693,1.21652317463417,0,0,2.61630187656536,0.439372365468944,0.194429899074283,0.419959264876088,0,0,0,0,0,0,0,65.5505333185097,69.8268092639083,74.7921056137291,0,0,0,0,0,0.599200221036809,0,93.6317199145553,62.3727435092411,71.3001618981185,21.7094748146891,20.0990372265968,70.1872279501687,43.3221529002428,53.3146896233812,63.8672109796454,55.6716794051418,71.4270379641532,69.1084147706216,58.5520919055422,74.4906119896167,61.4202597803038,55.7134983931363,48.7426410408024,50.3814881159972,57.9452740852349,76.9829711258491,2.34751199332871,5.97015324843606,0,0,0,0,0,0,1.82577746171277,0.170430322578058,0,0,3.23939865486365,1.28326477414318,2.54805239706646,7.11066703153331,0.216491041011214,0,0,1.02765491747154,0,1.48442139064825,10.0621489524359,14.3098774806706,8.76338889573022,11.6056433225519,7.87844337809222,0.753999547978053,0,0.144599356919912,0,0.647067399789637,0,0,0,11.4184510834503,12.7762491156208,0,0,0,0,61.4141621559773,26.992535566299,42.596825366261,40.848715245185,34.2658712822643,74.3881199523225,43.4806585021591,0.611036183101898,0,0,1.89397670297827,9.36867189331467,16.0931473103431,21.2473313170312,20.1944455899858,9.66118287948856,12.811372028485,10.1197862524507,6.46758426847539,1.5089759505299,3.21480336285293,3.51902248327898,1.31517439456545,1.94633074457919,1.0447564995665,0.411564272815887,2.58744546864041,0,0,0,1.03562886267751,2.57978665979206,0.900310307305074,1.18372367792605,0.590292695242212,1.07986979021165,0.465067889500816,0,0.350296027101508,0.329119699826961,0.492502392237286,0.243206428637567,0.146199987425332,0.658650345873152,0.402619256281115,30.2817525932343,78.2075054082562,0,0,4.90562976231038,5.34144345279009,4.63922860759536,2.21851877085677,2.00140239460383,1.52180500890047,0,0.658795818896044,1.00534083520108,0,0.58489226135736,0,0,0.199141273254367,1.89667900953082,4.45569199177942,1.1270773567308,1.83286195060783,0.581857461502877,1.05203729835478,0,0,0,0,0,0.500535317148282,0.393117990226406,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0.179397413521912,0,0.554259570499814,5.11626811780309,2.28150967018836,1.52770577197669,0.469380496577004,0.837531287209079,0.238043640886014,0.195133647857799,0.788175720530955,0.664394068946325,0.478364305972461,1.14704320301017,0.172684981865896,0.289298117163023,0,0,0,0,78.6697890940181,64.9352743720806,7.70494243270374,0.252470927204373,7.88770548540642,10.1514073517126,11.8482868753039,5.73525115086125,12.0311284004493,9.34152551603147,7.69140333182299,10.8134667427185,8.30104333687699,27.9549545286972,0.99358059645788,1.06839362200353,0.81443479676788,0.164970122972535,0,2.6705869977048,1.81394134178851,1.32023555829129,0.295301892880773,1.53717573971964,1.55056975900933,0.363533729477506,0,0.632073515871632,1.05418608574999,1.03135543248187,13.2771446243977,10.8036656418786,3.88076051348264,9.21649250635847,11.8817956540323,10.8804978737263,13.3284706687718,4.26250928760439,0.23467170806371,0.21183207086382,3.30792597082443,0.32977250588296,0,0.120625849856312,0,0,0,63.0446026835733,0,0.82554747185289,0.740778109478847,0,0,0,0,0,0,0,3.95419991976419,4.87966721104437,3.67218158794124,1.88179466413022,2.40198820120795,1.34864346384821,0.909188012978695,0.26175594198403,0,0,0.56369293868419,2.24274819065968,2.15096037594227,1.16670713006429,2.58319646955462,3.54807863530634,2.58185925020659,0.39061315453185,1.04859344425711,0,0.288030006257865,0,0.608175645870493,0.718976700153791,0.129920822977795,0.179026695667481,0.39736270956253,0,0.295379054349154,0,0,0.100826185136841,0.0974578807397524,0,0.116876902181569,0,0.221985953374065,0.179427713218951,0.167884616364078,1.54551675225752,0,0.549454872801795,1.07184189539533,0,31.6261031865557,39.5879703396172,45.2587455617123,41.244763762485,41.1049511862385,25.6833925112498,18.9006300064906,35.1250538514892,35.7982503097522,31.0656187051092,29.0604573235695,48.2820096815248,36.1955244198764,23.3382448385562,28.0881637921496,19.8550989126015,20.224452229947,15.0405591784393,21.1806678330598,20.2157769411038,19.010947491768,20.5602712110823,17.0427543595186,19.079495416651,16.8285924039947,21.9095097990214,14.6014250690518,15.8185560780238,14.4230065281157,20.9022466590844,19.8864166383541,17.5701048097744,16.4520971063651,19.912459078629,18.0690010397435,19.0382867756272,17.0123014771678,17.0995312434598,16.4322977753493,17.9565526930476,15.4225523561426,14.0861409797056,17.5969348562966,17.9726735775721,14.0821826016233,27.9787847290499,15.2055545489515,8.37997110788363,4.20834330551455,2.20591419119516,3.70988536992674 | |||
|short_description=p1@Elavl2 | |||
}} |
Latest revision as of 07:07, 27 September 2015
Short description: | p1@Elavl2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Elavl2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000107109, ENSMUST00000107111, ENSMUST00000107120_5end |
EntrezGene: | Elavl2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.19e-18 | 33 |
neuronal stem cell | 3.19e-18 | 33 |
neuroblast | 3.19e-18 | 33 |
electrically signaling cell | 3.19e-18 | 33 |
CNS neuron (sensu Vertebrata) | 2.90e-17 | 23 |
neuroblast (sensu Vertebrata) | 2.90e-17 | 23 |
electrically responsive cell | 3.49e-14 | 39 |
electrically active cell | 3.49e-14 | 39 |
ectodermal cell | 1.65e-12 | 44 |
neurectodermal cell | 1.65e-12 | 44 |
neural cell | 1.95e-12 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.10e-29 | 75 |
central nervous system | 8.34e-29 | 73 |
neurectoderm | 5.30e-28 | 64 |
neural plate | 5.30e-28 | 64 |
presumptive neural plate | 5.30e-28 | 64 |
regional part of nervous system | 2.74e-26 | 54 |
ectoderm-derived structure | 6.40e-25 | 95 |
ectoderm | 6.40e-25 | 95 |
presumptive ectoderm | 6.40e-25 | 95 |
neural tube | 1.02e-24 | 52 |
neural rod | 1.02e-24 | 52 |
future spinal cord | 1.02e-24 | 52 |
neural keel | 1.02e-24 | 52 |
ecto-epithelium | 1.43e-22 | 73 |
pre-chordal neural plate | 8.28e-22 | 49 |
brain | 3.16e-21 | 47 |
future brain | 3.16e-21 | 47 |
regional part of brain | 1.15e-20 | 46 |
anterior neural tube | 1.56e-19 | 40 |
gray matter | 3.78e-19 | 34 |
regional part of forebrain | 8.17e-19 | 39 |
forebrain | 8.17e-19 | 39 |
future forebrain | 8.17e-19 | 39 |
structure with developmental contribution from neural crest | 2.41e-18 | 92 |
brain grey matter | 5.16e-16 | 29 |
regional part of telencephalon | 5.16e-16 | 29 |
telencephalon | 5.16e-16 | 29 |
cerebral cortex | 1.03e-10 | 21 |
cerebral hemisphere | 1.03e-10 | 21 |
pallium | 1.03e-10 | 21 |
regional part of cerebral cortex | 5.35e-08 | 17 |
occipital lobe | 9.08e-07 | 10 |
visual cortex | 9.08e-07 | 10 |
neocortex | 9.08e-07 | 10 |