FFCP PHASE1:Mm9::chr1:59030365..59030426,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:59030365..59030426,+
|short_description=p1@Stradb
|description=CAGE_peak_1_at_Stradb_5end
|association_with_transcript=0bp_to_ENSMUST00000027185,ENSMUST000...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=227154 | |EntrezGene=227154 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K4T3 | |UniProt=Q8K4T3 | ||
|association_with_transcript=0bp_to_ENSMUST00000027185,ENSMUST00000114296,ENSMUST00000123301,ENSMUST00000123965,ENSMUST00000147637,ENSMUST00000153990,NM_172656,uc007bcw.1,uc007bcx.1,uc007bcy.1,uc007bcz.1_5end | |||
|cluster_id=chr1:59030365..59030426,+ | |||
|description=CAGE_peak_1_at_Stradb_5end | |||
|id=chr1:59030365..59030426,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.62e-14!23;CL:0000337!2.62e-14!23;CL:0000540!5.71e-11!33;CL:0000047!5.71e-11!33;CL:0000031!5.71e-11!33;CL:0000404!5.71e-11!33;CL:0002319!2.84e-10!43;CL:0000221!4.44e-10!44;CL:0000133!4.44e-10!44;CL:0000393!4.81e-08!39;CL:0000211!4.81e-08!39;CL:0000055!1.65e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.62e-14,23;CL:0000337,2.62e-14,23;CL:0000540,5.71e-11,33;CL:0000047,5.71e-11,33;CL:0000031,5.71e-11,33;CL:0000404,5.71e-11,33;CL:0002319,2.84e-10,43;CL:0000221,4.44e-10,44;CL:0000133,4.44e-10,44;CL:0000393,4.81e-08,39;CL:0000211,4.81e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.74e-23!73;UBERON:0005743!4.74e-23!73;UBERON:0000073!1.81e-21!75;UBERON:0001016!1.81e-21!75;UBERON:0001049!1.50e-20!52;UBERON:0005068!1.50e-20!52;UBERON:0006241!1.50e-20!52;UBERON:0007135!1.50e-20!52;UBERON:0002020!8.99e-20!34;UBERON:0000955!7.35e-19!50;UBERON:0006238!7.35e-19!50;UBERON:0002346!2.10e-18!71;UBERON:0003075!2.10e-18!71;UBERON:0007284!2.10e-18!71;UBERON:0002616!2.22e-18!49;UBERON:0000033!5.76e-18!63;UBERON:0004121!1.21e-17!102;UBERON:0000924!1.21e-17!102;UBERON:0006601!1.21e-17!102;UBERON:0002791!1.53e-16!29;UBERON:0003528!1.53e-16!29;UBERON:0001893!1.53e-16!29;UBERON:0003080!2.49e-15!40;UBERON:0003056!3.48e-15!49;UBERON:0002780!8.51e-15!39;UBERON:0001890!8.51e-15!39;UBERON:0006240!8.51e-15!39;UBERON:0000956!3.93e-12!21;UBERON:0001869!3.93e-12!21;UBERON:0000203!3.93e-12!21;UBERON:0002619!4.02e-10!17;UBERON:0007811!4.59e-09!86;UBERON:0000153!2.72e-08!94;UBERON:0002021!1.08e-07!10;UBERON:0000411!1.08e-07!10;UBERON:0001950!1.08e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.74e-23,73;UBERON:0000073,1.25e-21,54;UBERON:0001016,1.81e-21,75;UBERON:0001049,1.50e-20,52;UBERON:0005068,1.50e-20,52;UBERON:0006241,1.50e-20,52;UBERON:0007135,1.50e-20,52;UBERON:0002346,6.07e-20,64;UBERON:0003075,6.07e-20,64;UBERON:0007284,6.07e-20,64;UBERON:0002020,8.99e-20,34;UBERON:0004121,1.65e-18,95;UBERON:0000924,1.65e-18,95;UBERON:0006601,1.65e-18,95;UBERON:0000955,2.51e-17,47;UBERON:0006238,2.51e-17,47;UBERON:0002616,7.40e-17,46;UBERON:0003528,1.53e-16,29;UBERON:0002791,1.53e-16,29;UBERON:0001893,1.53e-16,29;UBERON:0010371,2.38e-16,73;UBERON:0010314,1.07e-15,92;UBERON:0003080,2.49e-15,40;UBERON:0003056,3.48e-15,49;UBERON:0002780,8.51e-15,39;UBERON:0001890,8.51e-15,39;UBERON:0006240,8.51e-15,39;UBERON:0000956,3.93e-12,21;UBERON:0001869,3.93e-12,21;UBERON:0000203,3.93e-12,21;UBERON:0002619,4.02e-10,17;UBERON:0002021,1.08e-07,10;UBERON:0000411,1.08e-07,10;UBERON:0001950,1.08e-07,10 | |||
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| ||
|short_description=p1@Stradb | |||
}} | }} |
Latest revision as of 06:25, 27 September 2015
Short description: | p1@Stradb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Stradb_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000027185, ENSMUST00000114296, ENSMUST00000123301, ENSMUST00000123965, ENSMUST00000147637, ENSMUST00000153990, NM_172656, uc007bcw.1, uc007bcx.1, uc007bcy.1, uc007bcz.1_5end |
EntrezGene: | Stradb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.62e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.62e-14 | 23 |
neuron | 5.71e-11 | 33 |
neuronal stem cell | 5.71e-11 | 33 |
neuroblast | 5.71e-11 | 33 |
electrically signaling cell | 5.71e-11 | 33 |
neural cell | 2.84e-10 | 43 |
ectodermal cell | 4.44e-10 | 44 |
neurectodermal cell | 4.44e-10 | 44 |
electrically responsive cell | 4.81e-08 | 39 |
electrically active cell | 4.81e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.74e-23 | 73 |
regional part of nervous system | 1.25e-21 | 54 |
nervous system | 1.81e-21 | 75 |
neural tube | 1.50e-20 | 52 |
neural rod | 1.50e-20 | 52 |
future spinal cord | 1.50e-20 | 52 |
neural keel | 1.50e-20 | 52 |
neurectoderm | 6.07e-20 | 64 |
neural plate | 6.07e-20 | 64 |
presumptive neural plate | 6.07e-20 | 64 |
gray matter | 8.99e-20 | 34 |
ectoderm-derived structure | 1.65e-18 | 95 |
ectoderm | 1.65e-18 | 95 |
presumptive ectoderm | 1.65e-18 | 95 |
brain | 2.51e-17 | 47 |
future brain | 2.51e-17 | 47 |
regional part of brain | 7.40e-17 | 46 |
brain grey matter | 1.53e-16 | 29 |
regional part of telencephalon | 1.53e-16 | 29 |
telencephalon | 1.53e-16 | 29 |
ecto-epithelium | 2.38e-16 | 73 |
structure with developmental contribution from neural crest | 1.07e-15 | 92 |
anterior neural tube | 2.49e-15 | 40 |
pre-chordal neural plate | 3.48e-15 | 49 |
regional part of forebrain | 8.51e-15 | 39 |
forebrain | 8.51e-15 | 39 |
future forebrain | 8.51e-15 | 39 |
cerebral cortex | 3.93e-12 | 21 |
cerebral hemisphere | 3.93e-12 | 21 |
pallium | 3.93e-12 | 21 |
regional part of cerebral cortex | 4.02e-10 | 17 |
occipital lobe | 1.08e-07 | 10 |
visual cortex | 1.08e-07 | 10 |
neocortex | 1.08e-07 | 10 |