FFCP PHASE1:Mm9::chr1:59030365..59030426,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=227154 | |EntrezGene=227154 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K4T3 | |UniProt=Q8K4T3 | ||
|association_with_transcript=0bp_to_ENSMUST00000027185,ENSMUST00000114296,ENSMUST00000123301,ENSMUST00000123965,ENSMUST00000147637,ENSMUST00000153990,NM_172656,uc007bcw.1,uc007bcx.1,uc007bcy.1,uc007bcz.1_5end | |association_with_transcript=0bp_to_ENSMUST00000027185,ENSMUST00000114296,ENSMUST00000123301,ENSMUST00000123965,ENSMUST00000147637,ENSMUST00000153990,NM_172656,uc007bcw.1,uc007bcx.1,uc007bcy.1,uc007bcz.1_5end | ||
|cluster_id=chr1:59030365..59030426,+ | |||
|description=CAGE_peak_1_at_Stradb_5end | |description=CAGE_peak_1_at_Stradb_5end | ||
|id=chr1:59030365..59030426,+ | |id=chr1:59030365..59030426,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.62e-14!23;CL:0000337!2.62e-14!23;CL:0000540!5.71e-11!33;CL:0000047!5.71e-11!33;CL:0000031!5.71e-11!33;CL:0000404!5.71e-11!33;CL:0002319!2.84e-10!43;CL:0000221!4.44e-10!44;CL:0000133!4.44e-10!44;CL:0000393!4.81e-08!39;CL:0000211!4.81e-08!39;CL:0000055!1.65e-07!50 | |ontology_enrichment_celltype=CL:0000117!2.62e-14!23;CL:0000337!2.62e-14!23;CL:0000540!5.71e-11!33;CL:0000047!5.71e-11!33;CL:0000031!5.71e-11!33;CL:0000404!5.71e-11!33;CL:0002319!2.84e-10!43;CL:0000221!4.44e-10!44;CL:0000133!4.44e-10!44;CL:0000393!4.81e-08!39;CL:0000211!4.81e-08!39;CL:0000055!1.65e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.62e-14,23;CL:0000337,2.62e-14,23;CL:0000540,5.71e-11,33;CL:0000047,5.71e-11,33;CL:0000031,5.71e-11,33;CL:0000404,5.71e-11,33;CL:0002319,2.84e-10,43;CL:0000221,4.44e-10,44;CL:0000133,4.44e-10,44;CL:0000393,4.81e-08,39;CL:0000211,4.81e-08,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.74e-23!73;UBERON:0005743!4.74e-23!73;UBERON:0000073!1.81e-21!75;UBERON:0001016!1.81e-21!75;UBERON:0001049!1.50e-20!52;UBERON:0005068!1.50e-20!52;UBERON:0006241!1.50e-20!52;UBERON:0007135!1.50e-20!52;UBERON:0002020!8.99e-20!34;UBERON:0000955!7.35e-19!50;UBERON:0006238!7.35e-19!50;UBERON:0002346!2.10e-18!71;UBERON:0003075!2.10e-18!71;UBERON:0007284!2.10e-18!71;UBERON:0002616!2.22e-18!49;UBERON:0000033!5.76e-18!63;UBERON:0004121!1.21e-17!102;UBERON:0000924!1.21e-17!102;UBERON:0006601!1.21e-17!102;UBERON:0002791!1.53e-16!29;UBERON:0003528!1.53e-16!29;UBERON:0001893!1.53e-16!29;UBERON:0003080!2.49e-15!40;UBERON:0003056!3.48e-15!49;UBERON:0002780!8.51e-15!39;UBERON:0001890!8.51e-15!39;UBERON:0006240!8.51e-15!39;UBERON:0000956!3.93e-12!21;UBERON:0001869!3.93e-12!21;UBERON:0000203!3.93e-12!21;UBERON:0002619!4.02e-10!17;UBERON:0007811!4.59e-09!86;UBERON:0000153!2.72e-08!94;UBERON:0002021!1.08e-07!10;UBERON:0000411!1.08e-07!10;UBERON:0001950!1.08e-07!10 | |ontology_enrichment_uberon=UBERON:0001017!4.74e-23!73;UBERON:0005743!4.74e-23!73;UBERON:0000073!1.81e-21!75;UBERON:0001016!1.81e-21!75;UBERON:0001049!1.50e-20!52;UBERON:0005068!1.50e-20!52;UBERON:0006241!1.50e-20!52;UBERON:0007135!1.50e-20!52;UBERON:0002020!8.99e-20!34;UBERON:0000955!7.35e-19!50;UBERON:0006238!7.35e-19!50;UBERON:0002346!2.10e-18!71;UBERON:0003075!2.10e-18!71;UBERON:0007284!2.10e-18!71;UBERON:0002616!2.22e-18!49;UBERON:0000033!5.76e-18!63;UBERON:0004121!1.21e-17!102;UBERON:0000924!1.21e-17!102;UBERON:0006601!1.21e-17!102;UBERON:0002791!1.53e-16!29;UBERON:0003528!1.53e-16!29;UBERON:0001893!1.53e-16!29;UBERON:0003080!2.49e-15!40;UBERON:0003056!3.48e-15!49;UBERON:0002780!8.51e-15!39;UBERON:0001890!8.51e-15!39;UBERON:0006240!8.51e-15!39;UBERON:0000956!3.93e-12!21;UBERON:0001869!3.93e-12!21;UBERON:0000203!3.93e-12!21;UBERON:0002619!4.02e-10!17;UBERON:0007811!4.59e-09!86;UBERON:0000153!2.72e-08!94;UBERON:0002021!1.08e-07!10;UBERON:0000411!1.08e-07!10;UBERON:0001950!1.08e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.74e-23,73;UBERON:0000073,1.25e-21,54;UBERON:0001016,1.81e-21,75;UBERON:0001049,1.50e-20,52;UBERON:0005068,1.50e-20,52;UBERON:0006241,1.50e-20,52;UBERON:0007135,1.50e-20,52;UBERON:0002346,6.07e-20,64;UBERON:0003075,6.07e-20,64;UBERON:0007284,6.07e-20,64;UBERON:0002020,8.99e-20,34;UBERON:0004121,1.65e-18,95;UBERON:0000924,1.65e-18,95;UBERON:0006601,1.65e-18,95;UBERON:0000955,2.51e-17,47;UBERON:0006238,2.51e-17,47;UBERON:0002616,7.40e-17,46;UBERON:0003528,1.53e-16,29;UBERON:0002791,1.53e-16,29;UBERON:0001893,1.53e-16,29;UBERON:0010371,2.38e-16,73;UBERON:0010314,1.07e-15,92;UBERON:0003080,2.49e-15,40;UBERON:0003056,3.48e-15,49;UBERON:0002780,8.51e-15,39;UBERON:0001890,8.51e-15,39;UBERON:0006240,8.51e-15,39;UBERON:0000956,3.93e-12,21;UBERON:0001869,3.93e-12,21;UBERON:0000203,3.93e-12,21;UBERON:0002619,4.02e-10,17;UBERON:0002021,1.08e-07,10;UBERON:0000411,1.08e-07,10;UBERON:0001950,1.08e-07,10 | |||
|phase1_expression=9.28863313207805,2.09385244583617,3.18499467572675,2.41971369045464,1.50268718983904,2.51818907867835,3.03696432774183,8.13476937681931,1.54867594366833,0.70219357896598,2.05461561870606,2.07407613387875,6.50562773738582,5.42006494997784,21.3190247562024,21.4623783433216,39.8750270533044,23.9751245672261,23.7207970137928,17.3999757237192,13.0116233931137,6.55320277925843,7.31359409589019,3.03985603307473,3.67054849707472,2.8711598205751,2.15380998079537,2.58565479223067,1.90023419456374,2.01624103807945,1.77384408524244,9.52546010189447,4.30545351309199,0,4.04392267651784,6.81562045969819,5.3084032628216,24.6933662134776,16.4080422349998,18.3233310390829,13.5293242247133,21.1744100337118,18.4493934151838,3.52511090331616,4.76471576731718,7.89251034295231,9.38869613217647,14.3896603211095,12.0827400503959,11.665793944457,12.738764367908,23.0004102983955,16.4426953936582,5.80289713609076,4.36921938885203,4.11615097657515,6.87680255853016,6.70373719960675,51.9953304409166,65.5948814297321,71.6229485961982,4.74382344896785,6.22506357277798,9.44894703145469,6.92206453796882,7.104801149461,8.98800331555214,12.6792040756113,25.8187134648109,33.7514845829227,32.3900440481128,45.4185065202048,46.1615250588872,36.1347857684114,29.0411777185256,53.3146896233812,25.3266526298594,29.3680877595932,29.3388478519425,53.0182876675379,49.128864614494,43.2358097562111,30.9893128891533,34.8912818219642,24.90611438762,50.0868595305235,45.701309536512,46.9726603479757,3.55913108665965,4.83657984683427,6.37701875143691,5.16254326188832,2.03991400112325,2.69851595818909,3.24888208723835,5.82434953226536,15.5893306346245,5.11290967734173,2.59786004602869,5.3000936176551,7.46470124816407,2.56652954828636,5.09610479413291,0,1.73192832808971,3.29367825117628,2.52762222507392,6.16592950482924,6.21450920753212,8.75808620482466,7.11289839741157,7.61163695780353,7.61031140944993,7.53613202763113,8.34879820663504,6.1576629751541,10.6293836125781,9.68815691363408,22.1152637987469,14.8825501951616,19.2132121060542,13.091631834651,3.72783522436244,22.2513405728776,16.546289838263,1.02182822083437,4.67278985573089,7.19883277192089,5.20987930999565,32.3547781114417,24.2475319493872,41.8428992535839,31.9836749153789,36.0558794835766,26.5968697036237,22.5515355664183,5.90668310331835,12.4406970610093,10.867078612648,10.1012090825508,7.54698569183682,10.1156925950728,11.7040384373477,10.3986324306643,10.8858398642125,10.7615525039274,14.523767306758,10.0894314588216,5.38919982332106,7.37513712654495,10.9089696981648,7.45265490253754,5.83899223373756,8.358051996532,7.61393904709391,6.76716507182877,1.40442637462647,5.91900186363845,5.68326998791185,10.1491628542396,5.15957331958412,6.12211008967451,9.94327889457883,7.28027657465394,8.4846912088058,6.74348439776183,6.9751084363901,9.22446204700639,7.89887279584706,7.22336841948019,10.6200140505071,11.8421989814519,8.34290438105992,12.7496097822353,26.2862435705159,40.3386080526795,2.31293148088659,2.64450566663544,7.03851226766272,6.96710015581316,5.02583099156164,4.63872106633688,7.56085349072559,6.08722003560189,2.37264530772256,3.62337700392824,3.2673577144035,3.97912944082302,3.50935356814416,0.898819408654221,1.72910439899755,1.99141273254367,5.31070122668629,6.85491075658373,3.38123207019241,4.2766778847516,5.81857461502877,4.76923575254166,5.31186911843761,3.39503340353085,4.39596437955849,3.70191491765402,2.66807364378434,10.8449318715461,12.579775687245,14.3911751926306,14.8087888613607,13.9882752656402,14.2590476997595,10.0693648107784,8.91743747262695,7.4131581560782,7.18841032636773,4.83783231969054,4.36852742360385,3.53610429125956,5.56131981917928,1.4473305640901,4.43407656399851,7.76914788258988,6.51859905768104,3.05541154395339,5.63256595892405,4.52266895092903,7.61739650835244,3.12213836572478,4.57141917907954,5.09368786192182,3.34855014180723,4.58817281204066,4.66249451037918,4.48412081602686,7.53956419696361,5.4390568381871,1.47529281905711,4.13905119457099,22.4770825982909,22.7390671988874,6.88526770582037,42.667586697539,10.7272794601527,7.02789739733949,7.97066571611356,7.16906393857656,8.46634961513098,6.51076020814315,8.09621403349789,6.72188473196017,9.09161889277004,25.0630626809009,6.67118400478862,11.9303954457061,9.93610452056814,5.27904393512113,7.96470830039777,5.34117399540959,3.93020624054176,3.39489143560617,3.2483208216885,5.53383266299069,3.35956781118687,3.63533729477506,4.63446591900138,3.47640433729398,6.32511651449993,2.06271086496374,7.83011093233712,9.18311579559682,9.57254259992383,7.07312215604255,9.04435191575595,7.84822797449111,9.21474515371877,5.78483403317739,3.28540391289194,10.3797714723272,6.17479514553893,8.07942639413252,8.07322133479528,6.99629929166608,5.13301079213487,6.07321329056727,2.91480836629851,25.4032663754398,17.0870880797853,4.54051109519089,7.59297562215818,19.9670564424972,18.3170265146174,25.394377225924,5.43930975980337,4.75834937900437,3.73139929271944,6.68269432610579,10.1227517945963,5.08298667817122,6.91234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| |phase1_expression=9.28863313207805,2.09385244583617,3.18499467572675,2.41971369045464,1.50268718983904,2.51818907867835,3.03696432774183,8.13476937681931,1.54867594366833,0.70219357896598,2.05461561870606,2.07407613387875,6.50562773738582,5.42006494997784,21.3190247562024,21.4623783433216,39.8750270533044,23.9751245672261,23.7207970137928,17.3999757237192,13.0116233931137,6.55320277925843,7.31359409589019,3.03985603307473,3.67054849707472,2.8711598205751,2.15380998079537,2.58565479223067,1.90023419456374,2.01624103807945,1.77384408524244,9.52546010189447,4.30545351309199,0,4.04392267651784,6.81562045969819,5.3084032628216,24.6933662134776,16.4080422349998,18.3233310390829,13.5293242247133,21.1744100337118,18.4493934151838,3.52511090331616,4.76471576731718,7.89251034295231,9.38869613217647,14.3896603211095,12.0827400503959,11.665793944457,12.738764367908,23.0004102983955,16.4426953936582,5.80289713609076,4.36921938885203,4.11615097657515,6.87680255853016,6.70373719960675,51.9953304409166,65.5948814297321,71.6229485961982,4.74382344896785,6.22506357277798,9.44894703145469,6.92206453796882,7.104801149461,8.98800331555214,12.6792040756113,25.8187134648109,33.7514845829227,32.3900440481128,45.4185065202048,46.1615250588872,36.1347857684114,29.0411777185256,53.3146896233812,25.3266526298594,29.3680877595932,29.3388478519425,53.0182876675379,49.128864614494,43.2358097562111,30.9893128891533,34.8912818219642,24.90611438762,50.0868595305235,45.701309536512,46.9726603479757,3.55913108665965,4.83657984683427,6.37701875143691,5.16254326188832,2.03991400112325,2.69851595818909,3.24888208723835,5.82434953226536,15.5893306346245,5.11290967734173,2.59786004602869,5.3000936176551,7.46470124816407,2.56652954828636,5.09610479413291,0,1.73192832808971,3.29367825117628,2.52762222507392,6.16592950482924,6.21450920753212,8.75808620482466,7.11289839741157,7.61163695780353,7.61031140944993,7.53613202763113,8.34879820663504,6.1576629751541,10.6293836125781,9.68815691363408,22.1152637987469,14.8825501951616,19.2132121060542,13.091631834651,3.72783522436244,22.2513405728776,16.546289838263,1.02182822083437,4.67278985573089,7.19883277192089,5.20987930999565,32.3547781114417,24.2475319493872,41.8428992535839,31.9836749153789,36.0558794835766,26.5968697036237,22.5515355664183,5.90668310331835,12.4406970610093,10.867078612648,10.1012090825508,7.54698569183682,10.1156925950728,11.7040384373477,10.3986324306643,10.8858398642125,10.7615525039274,14.523767306758,10.0894314588216,5.38919982332106,7.37513712654495,10.9089696981648,7.45265490253754,5.83899223373756,8.358051996532,7.61393904709391,6.76716507182877,1.40442637462647,5.91900186363845,5.68326998791185,10.1491628542396,5.15957331958412,6.12211008967451,9.94327889457883,7.28027657465394,8.4846912088058,6.74348439776183,6.9751084363901,9.22446204700639,7.89887279584706,7.22336841948019,10.6200140505071,11.8421989814519,8.34290438105992,12.7496097822353,26.2862435705159,40.3386080526795,2.31293148088659,2.64450566663544,7.03851226766272,6.96710015581316,5.02583099156164,4.63872106633688,7.56085349072559,6.08722003560189,2.37264530772256,3.62337700392824,3.2673577144035,3.97912944082302,3.50935356814416,0.898819408654221,1.72910439899755,1.99141273254367,5.31070122668629,6.85491075658373,3.38123207019241,4.2766778847516,5.81857461502877,4.76923575254166,5.31186911843761,3.39503340353085,4.39596437955849,3.70191491765402,2.66807364378434,10.8449318715461,12.579775687245,14.3911751926306,14.8087888613607,13.9882752656402,14.2590476997595,10.0693648107784,8.91743747262695,7.4131581560782,7.18841032636773,4.83783231969054,4.36852742360385,3.53610429125956,5.56131981917928,1.4473305640901,4.43407656399851,7.76914788258988,6.51859905768104,3.05541154395339,5.63256595892405,4.52266895092903,7.61739650835244,3.12213836572478,4.57141917907954,5.09368786192182,3.34855014180723,4.58817281204066,4.66249451037918,4.48412081602686,7.53956419696361,5.4390568381871,1.47529281905711,4.13905119457099,22.4770825982909,22.7390671988874,6.88526770582037,42.667586697539,10.7272794601527,7.02789739733949,7.97066571611356,7.16906393857656,8.46634961513098,6.51076020814315,8.09621403349789,6.72188473196017,9.09161889277004,25.0630626809009,6.67118400478862,11.9303954457061,9.93610452056814,5.27904393512113,7.96470830039777,5.34117399540959,3.93020624054176,3.39489143560617,3.2483208216885,5.53383266299069,3.35956781118687,3.63533729477506,4.63446591900138,3.47640433729398,6.32511651449993,2.06271086496374,7.83011093233712,9.18311579559682,9.57254259992383,7.07312215604255,9.04435191575595,7.84822797449111,9.21474515371877,5.78483403317739,3.28540391289194,10.3797714723272,6.17479514553893,8.07942639413252,8.07322133479528,6.99629929166608,5.13301079213487,6.07321329056727,2.91480836629851,25.4032663754398,17.0870880797853,4.54051109519089,7.59297562215818,19.9670564424972,18.3170265146174,25.394377225924,5.43930975980337,4.75834937900437,3.73139929271944,6.68269432610579,10.1227517945963,5.08298667817122,6.91234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| ||
|short_description=p1@Stradb | |short_description=p1@Stradb | ||
}} | }} |
Latest revision as of 06:25, 27 September 2015
Short description: | p1@Stradb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Stradb_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000027185, ENSMUST00000114296, ENSMUST00000123301, ENSMUST00000123965, ENSMUST00000147637, ENSMUST00000153990, NM_172656, uc007bcw.1, uc007bcx.1, uc007bcy.1, uc007bcz.1_5end |
EntrezGene: | Stradb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.62e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.62e-14 | 23 |
neuron | 5.71e-11 | 33 |
neuronal stem cell | 5.71e-11 | 33 |
neuroblast | 5.71e-11 | 33 |
electrically signaling cell | 5.71e-11 | 33 |
neural cell | 2.84e-10 | 43 |
ectodermal cell | 4.44e-10 | 44 |
neurectodermal cell | 4.44e-10 | 44 |
electrically responsive cell | 4.81e-08 | 39 |
electrically active cell | 4.81e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.74e-23 | 73 |
regional part of nervous system | 1.25e-21 | 54 |
nervous system | 1.81e-21 | 75 |
neural tube | 1.50e-20 | 52 |
neural rod | 1.50e-20 | 52 |
future spinal cord | 1.50e-20 | 52 |
neural keel | 1.50e-20 | 52 |
neurectoderm | 6.07e-20 | 64 |
neural plate | 6.07e-20 | 64 |
presumptive neural plate | 6.07e-20 | 64 |
gray matter | 8.99e-20 | 34 |
ectoderm-derived structure | 1.65e-18 | 95 |
ectoderm | 1.65e-18 | 95 |
presumptive ectoderm | 1.65e-18 | 95 |
brain | 2.51e-17 | 47 |
future brain | 2.51e-17 | 47 |
regional part of brain | 7.40e-17 | 46 |
brain grey matter | 1.53e-16 | 29 |
regional part of telencephalon | 1.53e-16 | 29 |
telencephalon | 1.53e-16 | 29 |
ecto-epithelium | 2.38e-16 | 73 |
structure with developmental contribution from neural crest | 1.07e-15 | 92 |
anterior neural tube | 2.49e-15 | 40 |
pre-chordal neural plate | 3.48e-15 | 49 |
regional part of forebrain | 8.51e-15 | 39 |
forebrain | 8.51e-15 | 39 |
future forebrain | 8.51e-15 | 39 |
cerebral cortex | 3.93e-12 | 21 |
cerebral hemisphere | 3.93e-12 | 21 |
pallium | 3.93e-12 | 21 |
regional part of cerebral cortex | 4.02e-10 | 17 |
occipital lobe | 1.08e-07 | 10 |
visual cortex | 1.08e-07 | 10 |
neocortex | 1.08e-07 | 10 |