FFCP PHASE1:Mm9::chr13:19487597..19487658,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76205 | |EntrezGene=76205 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1606 | |MCL_coexpression_id=1606 | ||
|TSSclassifier=NA | |||
|UniProt=Q9DCI3 | |UniProt=Q9DCI3 | ||
|association_with_transcript=0bp_to_ENSMUST00000039694,NM_024270,uc007ppa.1,uc007ppb.1,uc007ppc.1_5end | |association_with_transcript=0bp_to_ENSMUST00000039694,NM_024270,uc007ppa.1,uc007ppb.1,uc007ppc.1_5end | ||
|cluster_id=chr13:19487597..19487658,- | |||
|description=CAGE_peak_1_at_Stard3nl_5end | |description=CAGE_peak_1_at_Stard3nl_5end | ||
|id=chr13:19487597..19487658,- | |id=chr13:19487597..19487658,- | ||
|ontology_enrichment_celltype=CL:0000055!4.28e-17!50;CL:0000221!5.68e-17!44;CL:0000133!5.68e-17!44;CL:0002319!1.14e-16!43;CL:0002321!4.86e-15!70;CL:0000220!4.86e-15!70;CL:0000117!1.77e-13!23;CL:0000337!1.77e-13!23;CL:0000393!9.12e-12!39;CL:0000211!9.12e-12!39;CL:0000540!3.20e-11!33;CL:0000047!3.20e-11!33;CL:0000031!3.20e-11!33;CL:0000404!3.20e-11!33;CL:0000333!9.97e-07!10;CL:0000095!9.97e-07!10;CL:0000243!9.97e-07!10;CL:0000123!9.97e-07!10;CL:0000125!9.97e-07!10;CL:0000030!9.97e-07!10;CL:0000339!9.97e-07!10 | |ontology_enrichment_celltype=CL:0000055!4.28e-17!50;CL:0000221!5.68e-17!44;CL:0000133!5.68e-17!44;CL:0002319!1.14e-16!43;CL:0002321!4.86e-15!70;CL:0000220!4.86e-15!70;CL:0000117!1.77e-13!23;CL:0000337!1.77e-13!23;CL:0000393!9.12e-12!39;CL:0000211!9.12e-12!39;CL:0000540!3.20e-11!33;CL:0000047!3.20e-11!33;CL:0000031!3.20e-11!33;CL:0000404!3.20e-11!33;CL:0000333!9.97e-07!10;CL:0000095!9.97e-07!10;CL:0000243!9.97e-07!10;CL:0000123!9.97e-07!10;CL:0000125!9.97e-07!10;CL:0000030!9.97e-07!10;CL:0000339!9.97e-07!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.68e-17,44;CL:0000133,5.68e-17,44;CL:0002319,1.14e-16,43;CL:0002321,4.86e-15,70;CL:0000117,1.77e-13,23;CL:0000337,1.77e-13,23;CL:0000393,9.12e-12,39;CL:0000211,9.12e-12,39;CL:0000540,3.20e-11,33;CL:0000047,3.20e-11,33;CL:0000031,3.20e-11,33;CL:0000404,3.20e-11,33;CL:0000333,9.97e-07,10;CL:0000095,9.97e-07,10;CL:0000243,9.97e-07,10;CL:0000123,9.97e-07,10;CL:0000125,9.97e-07,10;CL:0000030,9.97e-07,10;CL:0000339,9.97e-07,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.30e-24!75;UBERON:0001016!1.30e-24!75;UBERON:0001017!1.06e-23!73;UBERON:0005743!1.06e-23!73;UBERON:0001049!3.23e-19!52;UBERON:0005068!3.23e-19!52;UBERON:0006241!3.23e-19!52;UBERON:0007135!3.23e-19!52;UBERON:0000955!3.01e-17!50;UBERON:0006238!3.01e-17!50;UBERON:0002616!4.28e-17!49;UBERON:0002020!8.53e-15!34;UBERON:0004121!8.35e-14!102;UBERON:0000924!8.35e-14!102;UBERON:0006601!8.35e-14!102;UBERON:0003080!2.20e-13!40;UBERON:0002346!3.46e-13!71;UBERON:0003075!3.46e-13!71;UBERON:0007284!3.46e-13!71;UBERON:0002780!3.97e-13!39;UBERON:0001890!3.97e-13!39;UBERON:0006240!3.97e-13!39;UBERON:0000033!8.00e-13!63;UBERON:0002791!7.60e-12!29;UBERON:0003528!7.60e-12!29;UBERON:0001893!7.60e-12!29;UBERON:0003056!5.00e-10!49;UBERON:0000956!5.83e-08!21;UBERON:0001869!5.83e-08!21;UBERON:0000203!5.83e-08!21;UBERON:0000344!6.90e-07!15;UBERON:0003076!9.64e-07!12;UBERON:0003057!9.64e-07!12 | |ontology_enrichment_uberon=UBERON:0000073!1.30e-24!75;UBERON:0001016!1.30e-24!75;UBERON:0001017!1.06e-23!73;UBERON:0005743!1.06e-23!73;UBERON:0001049!3.23e-19!52;UBERON:0005068!3.23e-19!52;UBERON:0006241!3.23e-19!52;UBERON:0007135!3.23e-19!52;UBERON:0000955!3.01e-17!50;UBERON:0006238!3.01e-17!50;UBERON:0002616!4.28e-17!49;UBERON:0002020!8.53e-15!34;UBERON:0004121!8.35e-14!102;UBERON:0000924!8.35e-14!102;UBERON:0006601!8.35e-14!102;UBERON:0003080!2.20e-13!40;UBERON:0002346!3.46e-13!71;UBERON:0003075!3.46e-13!71;UBERON:0007284!3.46e-13!71;UBERON:0002780!3.97e-13!39;UBERON:0001890!3.97e-13!39;UBERON:0006240!3.97e-13!39;UBERON:0000033!8.00e-13!63;UBERON:0002791!7.60e-12!29;UBERON:0003528!7.60e-12!29;UBERON:0001893!7.60e-12!29;UBERON:0003056!5.00e-10!49;UBERON:0000956!5.83e-08!21;UBERON:0001869!5.83e-08!21;UBERON:0000203!5.83e-08!21;UBERON:0000344!6.90e-07!15;UBERON:0003076!9.64e-07!12;UBERON:0003057!9.64e-07!12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.30e-24,75;UBERON:0001017,1.06e-23,73;UBERON:0000073,3.47e-20,54;UBERON:0001049,3.23e-19,52;UBERON:0005068,3.23e-19,52;UBERON:0006241,3.23e-19,52;UBERON:0007135,3.23e-19,52;UBERON:0000955,6.63e-16,47;UBERON:0006238,6.63e-16,47;UBERON:0002616,9.37e-16,46;UBERON:0004121,2.33e-15,95;UBERON:0000924,2.33e-15,95;UBERON:0006601,2.33e-15,95;UBERON:0002346,2.75e-15,64;UBERON:0003075,2.75e-15,64;UBERON:0007284,2.75e-15,64;UBERON:0002020,8.53e-15,34;UBERON:0003080,2.20e-13,40;UBERON:0002780,3.97e-13,39;UBERON:0001890,3.97e-13,39;UBERON:0006240,3.97e-13,39;UBERON:0003528,7.60e-12,29;UBERON:0002791,7.60e-12,29;UBERON:0001893,7.60e-12,29;UBERON:0010371,4.22e-11,73;UBERON:0003056,5.00e-10,49;UBERON:0010314,2.78e-09,92;UBERON:0000956,5.83e-08,21;UBERON:0001869,5.83e-08,21;UBERON:0000203,5.83e-08,21;UBERON:0000344,6.90e-07,15;UBERON:0003076,9.64e-07,12;UBERON:0003057,9.64e-07,12 | |||
|phase1_expression=24.1824759128239,32.1057375028212,40.4949323056687,26.0119221723874,23.041203577532,31.3934238475234,25.4637778249123,10.7172358456508,4.08287294239834,1.40438715793196,6.16384685611818,5.90313976565489,7.36163138704185,9.00430144915673,3.66420737997229,8.50396123037269,6.29605690315332,10.0947892914636,11.7918412900935,12.7316895539409,17.6039610612714,9.23405846168233,7.05239430675126,30.5585527535407,34.8702107222098,40.7704694521664,38.3378176581577,25.4256054569349,53.9666511256102,39.0646701127893,38.3593783433677,3.81018404075779,3.69038872550742,0,23.108129580102,23.4390849955474,17.9669033510885,17.1597968602132,26.5654017138092,12.0410461113974,14.7057872007754,11.6117732442936,11.6522484727477,14.8558245211181,17.8423398946346,21.2914232507551,50.8554373826225,43.6050312760893,44.5962950950978,39.080409713931,40.7360486929805,44.5632949531412,8.89247812106003,7.25362142011344,2.68875039313971,16.2073444702647,26.6476099143044,24.7522604293172,47.3420518411459,25.3915670050576,58.9463205260747,47.7770790217476,41.7968554172235,49.9444343091176,50.4321844909157,31.9716051725745,32.3568119359877,38.0376122268339,36.4987435325841,30.9163598779572,33.2313438935184,52.5597811302999,43.5111025674679,34.664896177832,32.8749965592551,44.122501757281,31.9336054898227,30.0065244500191,30.26048705148,49.1935853233623,42.3587789879157,51.0495103145625,39.3648028591947,39.3933827022176,29.9484565642548,39.1856018679978,32.3183715413964,43.9902692147709,25.0653699932839,32.1179130453838,12.1743085254705,16.3480536626463,10.879541339324,8.63525106620507,8.4470934268197,12.0967259516281,10.9546647702766,18.9177658061644,18.7045923314066,20.4936953215997,24.7884418806958,5.13305909657271,10.1922095882658,0,24.6799786752784,20.522149103483,16.6823066854878,10.8474685733107,11.9111426477699,12.1722554033156,15.26670875542,14.6143429589828,12.2226213545711,14.9215414147096,12.2292255421133,9.42499434972566,29.6633961281249,6.65157041831594,8.84610551949874,12.6178142958979,7.72945314611377,7.27312879702833,20.5030937339934,18.1524094147159,18.0124167859571,16.860165643767,8.98613433794402,15.5974710058286,12.7070227073065,23.8167116653668,21.9600289352941,29.2774640422974,26.7689453096106,20.4572365864264,30.5448425502553,26.2830846169767,17.720049309955,12.1918831197891,16.4269792981889,7.15502310014011,15.354212269599,17.4725599369439,14.2249082546226,16.1254155084215,11.4981683565744,11.0177799444971,14.7111707558774,8.2785078636485,13.1496475689034,14.5611681729221,12.1406275673125,12.4941567483718,9.73165372289593,12.1888258282758,10.2891068203972,16.5198441459349,15.4486901208912,11.0659600059328,10.7982129770325,12.6346721246656,14.540615718828,17.2859579002574,9.46978942340841,12.199382368339,14.1925743856388,12.0917651270212,12.0723030629829,12.6106569756543,13.8230273927324,11.4917224855367,8.18794976413143,10.0877991323479,9.44065495751518,9.5286557319864,22.5010244963616,24.9029161957868,29.0768529025742,9.25576983322405,13.2238715331845,14.6309103272076,11.2114691350221,14.722897297504,10.8965241483986,13.6962450801043,25.1500402618591,18.7756808385372,19.1014758688205,15.5186048192098,20.0813009732694,17.0775687644302,26.8011181844621,23.1003876975066,25.7948345296191,17.5942709418982,18.0332377076929,13.2373363099454,10.2794818198842,12.4841759404767,12.7737804991,11.513591542409,15.8568715119789,18.7563689161137,7.70776830426587,6.84064933435986,6.4864468387357,5.8464149220062,7.50582449137461,7.47649195232492,7.12952384987975,7.76779571117189,4.21551589615092,9.06052663520669,12.9391385874619,8.18710084870708,13.4176199439261,12.1237861414614,11.8402292924462,6.75420929908714,24.5721742921584,20.6545638829828,13.5260930446881,13.9190970335654,12.9079636558676,13.2329943379034,20.9478403979692,31.6116509529634,16.3940549870439,19.2674279994434,25.3533082165404,24.5794972073607,26.0754322617502,35.0050721767258,36.1899081454253,42.9685490216781,5.4094070032094,7.17435540392304,36.1238827472532,34.4602358581077,18.196778936811,9.3414243065618,13.8823616543153,17.9601822376454,17.6647186140895,12.4263774935327,14.9275111635204,18.3999745012741,14.9779959619711,13.4437694639203,14.6256477840214,20.2432429345738,14.6198287764517,17.450429159391,12.8680697889325,15.8371318053634,2.65490276679926,14.3240575331439,9.67435382287203,14.5225911412042,10.6308681437078,15.0643222492524,13.6966995379157,14.1778154496227,14.9728898921583,12.9575070753685,11.5960469432499,18.5643977846736,24.5116516142727,21.0671480016633,19.0157265160649,16.9326257674958,17.3793428969428,21.2258892946464,18.5940393280397,17.0500371504176,22.7631556821799,21.8187032989735,22.7144249996611,7.74965388824956,9.20347232166662,9.65006798850494,8.71418111222896,7.87876318776294,18.3632927076806,29.11177241565,7.34744787430767,12.7959858137198,10.926477114813,6.02779062415011,4.64760374251486,7.77845788902177,11.8984900995699,8.6769900440668,10.2267980615274,12.4107180341965,13.4442797271983,16.2655573701479,14.5807210109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|phase1_expression=24.1824759128239,32.1057375028212,40.4949323056687,26.0119221723874,23.041203577532,31.3934238475234,25.4637778249123,10.7172358456508,4.08287294239834,1.40438715793196,6.16384685611818,5.90313976565489,7.36163138704185,9.00430144915673,3.66420737997229,8.50396123037269,6.29605690315332,10.0947892914636,11.7918412900935,12.7316895539409,17.6039610612714,9.23405846168233,7.05239430675126,30.5585527535407,34.8702107222098,40.7704694521664,38.3378176581577,25.4256054569349,53.9666511256102,39.0646701127893,38.3593783433677,3.81018404075779,3.69038872550742,0,23.108129580102,23.4390849955474,17.9669033510885,17.1597968602132,26.5654017138092,12.0410461113974,14.7057872007754,11.6117732442936,11.6522484727477,14.8558245211181,17.8423398946346,21.2914232507551,50.8554373826225,43.6050312760893,44.5962950950978,39.080409713931,40.7360486929805,44.5632949531412,8.89247812106003,7.25362142011344,2.68875039313971,16.2073444702647,26.6476099143044,24.7522604293172,47.3420518411459,25.3915670050576,58.9463205260747,47.7770790217476,41.7968554172235,49.9444343091176,50.4321844909157,31.9716051725745,32.3568119359877,38.0376122268339,36.4987435325841,30.9163598779572,33.2313438935184,52.5597811302999,43.5111025674679,34.664896177832,32.8749965592551,44.122501757281,31.9336054898227,30.0065244500191,30.26048705148,49.1935853233623,42.3587789879157,51.0495103145625,39.3648028591947,39.3933827022176,29.9484565642548,39.1856018679978,32.3183715413964,43.9902692147709,25.0653699932839,32.1179130453838,12.1743085254705,16.3480536626463,10.879541339324,8.63525106620507,8.4470934268197,12.0967259516281,10.9546647702766,18.9177658061644,18.7045923314066,20.4936953215997,24.7884418806958,5.13305909657271,10.1922095882658,0,24.6799786752784,20.522149103483,16.6823066854878,10.8474685733107,11.9111426477699,12.1722554033156,15.26670875542,14.6143429589828,12.2226213545711,14.9215414147096,12.2292255421133,9.42499434972566,29.6633961281249,6.65157041831594,8.84610551949874,12.6178142958979,7.72945314611377,7.27312879702833,20.5030937339934,18.1524094147159,18.0124167859571,16.860165643767,8.98613433794402,15.5974710058286,12.7070227073065,23.8167116653668,21.9600289352941,29.2774640422974,26.7689453096106,20.4572365864264,30.5448425502553,26.2830846169767,17.720049309955,12.1918831197891,16.4269792981889,7.15502310014011,15.354212269599,17.4725599369439,14.2249082546226,16.1254155084215,11.4981683565744,11.0177799444971,14.7111707558774,8.2785078636485,13.1496475689034,14.5611681729221,12.1406275673125,12.4941567483718,9.73165372289593,12.1888258282758,10.2891068203972,16.5198441459349,15.4486901208912,11.0659600059328,10.7982129770325,12.6346721246656,14.540615718828,17.2859579002574,9.46978942340841,12.199382368339,14.1925743856388,12.0917651270212,12.0723030629829,12.6106569756543,13.8230273927324,11.4917224855367,8.18794976413143,10.0877991323479,9.44065495751518,9.5286557319864,22.5010244963616,24.9029161957868,29.0768529025742,9.25576983322405,13.2238715331845,14.6309103272076,11.2114691350221,14.722897297504,10.8965241483986,13.6962450801043,25.1500402618591,18.7756808385372,19.1014758688205,15.5186048192098,20.0813009732694,17.0775687644302,26.8011181844621,23.1003876975066,25.7948345296191,17.5942709418982,18.0332377076929,13.2373363099454,10.2794818198842,12.4841759404767,12.7737804991,11.513591542409,15.8568715119789,18.7563689161137,7.70776830426587,6.84064933435986,6.4864468387357,5.8464149220062,7.50582449137461,7.47649195232492,7.12952384987975,7.76779571117189,4.21551589615092,9.06052663520669,12.9391385874619,8.18710084870708,13.4176199439261,12.1237861414614,11.8402292924462,6.75420929908714,24.5721742921584,20.6545638829828,13.5260930446881,13.9190970335654,12.9079636558676,13.2329943379034,20.9478403979692,31.6116509529634,16.3940549870439,19.2674279994434,25.3533082165404,24.5794972073607,26.0754322617502,35.0050721767258,36.1899081454253,42.9685490216781,5.4094070032094,7.17435540392304,36.1238827472532,34.4602358581077,18.196778936811,9.3414243065618,13.8823616543153,17.9601822376454,17.6647186140895,12.4263774935327,14.9275111635204,18.3999745012741,14.9779959619711,13.4437694639203,14.6256477840214,20.2432429345738,14.6198287764517,17.450429159391,12.8680697889325,15.8371318053634,2.65490276679926,14.3240575331439,9.67435382287203,14.5225911412042,10.6308681437078,15.0643222492524,13.6966995379157,14.1778154496227,14.9728898921583,12.9575070753685,11.5960469432499,18.5643977846736,24.5116516142727,21.0671480016633,19.0157265160649,16.9326257674958,17.3793428969428,21.2258892946464,18.5940393280397,17.0500371504176,22.7631556821799,21.8187032989735,22.7144249996611,7.74965388824956,9.20347232166662,9.65006798850494,8.71418111222896,7.87876318776294,18.3632927076806,29.11177241565,7.34744787430767,12.7959858137198,10.926477114813,6.02779062415011,4.64760374251486,7.77845788902177,11.8984900995699,8.6769900440668,10.2267980615274,12.4107180341965,13.4442797271983,16.2655573701479,14.5807210109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| ||
|short_description=p1@Stard3nl | |short_description=p1@Stard3nl | ||
}} | }} |
Latest revision as of 05:46, 27 September 2015
Short description: | p1@Stard3nl |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Stard3nl_5end |
Coexpression cluster: | MCL_coexpression_mm9:1606 |
Association with transcript: | 0bp_to_ENSMUST00000039694, NM_024270, uc007ppa.1, uc007ppb.1, uc007ppc.1_5end |
EntrezGene: | Stard3nl |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.68e-17 | 44 |
neurectodermal cell | 5.68e-17 | 44 |
neural cell | 1.14e-16 | 43 |
embryonic cell | 4.86e-15 | 70 |
CNS neuron (sensu Vertebrata) | 1.77e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.77e-13 | 23 |
electrically responsive cell | 9.12e-12 | 39 |
electrically active cell | 9.12e-12 | 39 |
neuron | 3.20e-11 | 33 |
neuronal stem cell | 3.20e-11 | 33 |
neuroblast | 3.20e-11 | 33 |
electrically signaling cell | 3.20e-11 | 33 |
migratory neural crest cell | 9.97e-07 | 10 |
neuron associated cell | 9.97e-07 | 10 |
glial cell (sensu Vertebrata) | 9.97e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 9.97e-07 | 10 |
glial cell | 9.97e-07 | 10 |
glioblast | 9.97e-07 | 10 |
glioblast (sensu Vertebrata) | 9.97e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.30e-24 | 75 |
central nervous system | 1.06e-23 | 73 |
regional part of nervous system | 3.47e-20 | 54 |
neural tube | 3.23e-19 | 52 |
neural rod | 3.23e-19 | 52 |
future spinal cord | 3.23e-19 | 52 |
neural keel | 3.23e-19 | 52 |
brain | 6.63e-16 | 47 |
future brain | 6.63e-16 | 47 |
regional part of brain | 9.37e-16 | 46 |
ectoderm-derived structure | 2.33e-15 | 95 |
ectoderm | 2.33e-15 | 95 |
presumptive ectoderm | 2.33e-15 | 95 |
neurectoderm | 2.75e-15 | 64 |
neural plate | 2.75e-15 | 64 |
presumptive neural plate | 2.75e-15 | 64 |
gray matter | 8.53e-15 | 34 |
anterior neural tube | 2.20e-13 | 40 |
regional part of forebrain | 3.97e-13 | 39 |
forebrain | 3.97e-13 | 39 |
future forebrain | 3.97e-13 | 39 |
brain grey matter | 7.60e-12 | 29 |
regional part of telencephalon | 7.60e-12 | 29 |
telencephalon | 7.60e-12 | 29 |
ecto-epithelium | 4.22e-11 | 73 |
pre-chordal neural plate | 5.00e-10 | 49 |
structure with developmental contribution from neural crest | 2.78e-09 | 92 |
cerebral cortex | 5.83e-08 | 21 |
cerebral hemisphere | 5.83e-08 | 21 |
pallium | 5.83e-08 | 21 |
mucosa | 6.90e-07 | 15 |
posterior neural tube | 9.64e-07 | 12 |
chordal neural plate | 9.64e-07 | 12 |