FFCP PHASE1:Mm9::chr9:75531799..75531853,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20255 | |EntrezGene=20255 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=P47867 | |UniProt=P47867 | ||
|association_with_transcript=0bp_to_ENSMUST00000034699_5end | |association_with_transcript=0bp_to_ENSMUST00000034699_5end | ||
|cluster_id=chr9:75531799..75531853,- | |||
|description=CAGE_peak_1_at_Scg3_5end | |description=CAGE_peak_1_at_Scg3_5end | ||
|id=chr9:75531799..75531853,- | |id=chr9:75531799..75531853,- | ||
|ontology_enrichment_celltype=CL:0000221!6.77e-19!44;CL:0000133!6.77e-19!44;CL:0002319!1.04e-18!43;CL:0000540!7.51e-16!33;CL:0000047!7.51e-16!33;CL:0000031!7.51e-16!33;CL:0000404!7.51e-16!33;CL:0000117!4.79e-13!23;CL:0000337!4.79e-13!23;CL:0000055!2.85e-12!50;CL:0000393!3.98e-10!39;CL:0000211!3.98e-10!39 | |ontology_enrichment_celltype=CL:0000221!6.77e-19!44;CL:0000133!6.77e-19!44;CL:0002319!1.04e-18!43;CL:0000540!7.51e-16!33;CL:0000047!7.51e-16!33;CL:0000031!7.51e-16!33;CL:0000404!7.51e-16!33;CL:0000117!4.79e-13!23;CL:0000337!4.79e-13!23;CL:0000055!2.85e-12!50;CL:0000393!3.98e-10!39;CL:0000211!3.98e-10!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.03e-20,44;CL:0000133,5.03e-20,44;CL:0002319,8.08e-20,43;CL:0000540,3.32e-17,33;CL:0000047,3.32e-17,33;CL:0000031,3.32e-17,33;CL:0000404,3.32e-17,33;CL:0000117,3.91e-14,23;CL:0000337,3.91e-14,23;CL:0000393,5.82e-12,39;CL:0000211,5.82e-12,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.03e-42,75;UBERON:0004121,9.83e-42,95;UBERON:0000924,9.83e-42,95;UBERON:0006601,9.83e-42,95;UBERON:0001017,1.80e-41,73;UBERON:0002346,7.60e-34,64;UBERON:0003075,7.60e-34,64;UBERON:0007284,7.60e-34,64;UBERON:0010371,1.60e-32,73;UBERON:0000073,1.91e-31,54;UBERON:0001049,8.99e-30,52;UBERON:0005068,8.99e-30,52;UBERON:0006241,8.99e-30,52;UBERON:0007135,8.99e-30,52;UBERON:0000955,1.77e-26,47;UBERON:0006238,1.77e-26,47;UBERON:0003056,5.43e-26,49;UBERON:0002616,7.65e-26,46;UBERON:0003080,1.63e-23,40;UBERON:0002780,7.31e-23,39;UBERON:0001890,7.31e-23,39;UBERON:0006240,7.31e-23,39;UBERON:0002020,5.14e-22,34;UBERON:0010314,1.84e-21,92;UBERON:0003528,3.96e-19,29;UBERON:0002791,3.96e-19,29;UBERON:0001893,3.96e-19,29;UBERON:0000956,2.14e-14,21;UBERON:0001869,2.14e-14,21;UBERON:0000203,2.14e-14,21;UBERON:0002619,2.55e-12,17;UBERON:0002021,5.95e-09,10;UBERON:0000411,5.95e-09,10;UBERON:0001950,5.95e-09,10 | |||
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| ||
|short_description=p1@Scg3 | |short_description=p1@Scg3 | ||
}} | }} |
Latest revision as of 03:37, 27 September 2015
Short description: | p1@Scg3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scg3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000034699_5end |
EntrezGene: | Scg3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.03e-20 | 44 |
neurectodermal cell | 5.03e-20 | 44 |
neural cell | 8.08e-20 | 43 |
neuron | 3.32e-17 | 33 |
neuronal stem cell | 3.32e-17 | 33 |
neuroblast | 3.32e-17 | 33 |
electrically signaling cell | 3.32e-17 | 33 |
CNS neuron (sensu Vertebrata) | 3.91e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.91e-14 | 23 |
electrically responsive cell | 5.82e-12 | 39 |
electrically active cell | 5.82e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.03e-42 | 75 |
ectoderm-derived structure | 9.83e-42 | 95 |
ectoderm | 9.83e-42 | 95 |
presumptive ectoderm | 9.83e-42 | 95 |
central nervous system | 1.80e-41 | 73 |
neurectoderm | 7.60e-34 | 64 |
neural plate | 7.60e-34 | 64 |
presumptive neural plate | 7.60e-34 | 64 |
ecto-epithelium | 1.60e-32 | 73 |
regional part of nervous system | 1.91e-31 | 54 |
neural tube | 8.99e-30 | 52 |
neural rod | 8.99e-30 | 52 |
future spinal cord | 8.99e-30 | 52 |
neural keel | 8.99e-30 | 52 |
brain | 1.77e-26 | 47 |
future brain | 1.77e-26 | 47 |
pre-chordal neural plate | 5.43e-26 | 49 |
regional part of brain | 7.65e-26 | 46 |
anterior neural tube | 1.63e-23 | 40 |
regional part of forebrain | 7.31e-23 | 39 |
forebrain | 7.31e-23 | 39 |
future forebrain | 7.31e-23 | 39 |
gray matter | 5.14e-22 | 34 |
structure with developmental contribution from neural crest | 1.84e-21 | 92 |
brain grey matter | 3.96e-19 | 29 |
regional part of telencephalon | 3.96e-19 | 29 |
telencephalon | 3.96e-19 | 29 |
cerebral cortex | 2.14e-14 | 21 |
cerebral hemisphere | 2.14e-14 | 21 |
pallium | 2.14e-14 | 21 |
regional part of cerebral cortex | 2.55e-12 | 17 |
occipital lobe | 5.95e-09 | 10 |
visual cortex | 5.95e-09 | 10 |
neocortex | 5.95e-09 | 10 |