FFCP PHASE1:Mm9::chr1:39424745..39424776,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100042740,100505081,114641,638399,665533,665562,667682 | |EntrezGene=100042740,100505081,114641,638399,665533,665562,667682 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=81 | |MCL_coexpression_id=81 | ||
|TSSclassifier=NA | |||
|UniProt=P62900,Q5M9K9,D3YWP7 | |UniProt=P62900,Q5M9K9,D3YWP7 | ||
|association_with_transcript=49bp_to_ENSMUST00000086535,NM_001252218,NM_001252219,NM_053257,uc007ate.2,uc007atf.2_5end | |association_with_transcript=49bp_to_ENSMUST00000086535,NM_001252218,NM_001252219,NM_053257,uc007ate.2,uc007atf.2_5end | ||
|cluster_id=chr1:39424745..39424776,+ | |||
|description=CAGE_peak_1_at_Gm10191_5end,CAGE_peak_1_at_Gm13004_5end,CAGE_peak_1_at_Gm7689_5end,CAGE_peak_1_at_Gm8759_5end,CAGE_peak_1_at_LOC100505081_5end,CAGE_peak_1_at_LOC638399_5end,CAGE_peak_1_at_Rpl31_5end | |description=CAGE_peak_1_at_Gm10191_5end,CAGE_peak_1_at_Gm13004_5end,CAGE_peak_1_at_Gm7689_5end,CAGE_peak_1_at_Gm8759_5end,CAGE_peak_1_at_LOC100505081_5end,CAGE_peak_1_at_LOC638399_5end,CAGE_peak_1_at_Rpl31_5end | ||
|id=chr1:39424745..39424776,+ | |id=chr1:39424745..39424776,+ | ||
Latest revision as of 03:04, 27 September 2015
| Short description: | p1@Gm10191, p1@Gm13004, p1@Gm7689, p1@Gm8759, p1@LOC100505081, p1@LOC638399, p1@Rpl31 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Gm10191_5end, CAGE_peak_1_at_Gm13004_5end, CAGE_peak_1_at_Gm7689_5end, CAGE_peak_1_at_Gm8759_5end, CAGE_peak_1_at_LOC100505081_5end, CAGE_peak_1_at_LOC638399_5end, CAGE_peak_1_at_Rpl31_5end |
| Coexpression cluster: | MCL_coexpression_mm9:81 |
| Association with transcript: | 49bp_to_ENSMUST00000086535, NM_001252218, NM_001252219, NM_053257, uc007ate.2, uc007atf.2_5end |
| EntrezGene: | 100042740,100505081,114641,638399,665533,665562,667682 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| stem cell | 2.44e-16 | 97 |
| somatic stem cell | 1.19e-14 | 91 |
| multi fate stem cell | 1.19e-14 | 91 |
| connective tissue cell | 3.44e-14 | 46 |
| mesenchymal cell | 3.44e-14 | 46 |
| hematopoietic cell | 1.00e-13 | 32 |
| hematopoietic oligopotent progenitor cell | 1.00e-13 | 32 |
| hematopoietic stem cell | 1.00e-13 | 32 |
| hematopoietic multipotent progenitor cell | 1.00e-13 | 32 |
| motile cell | 8.78e-12 | 54 |
| hematopoietic lineage restricted progenitor cell | 6.44e-10 | 25 |
| lymphocyte | 3.23e-09 | 13 |
| common lymphoid progenitor | 3.23e-09 | 13 |
| lymphoid lineage restricted progenitor cell | 6.99e-09 | 12 |
| T cell | 2.98e-08 | 11 |
| pro-T cell | 2.98e-08 | 11 |
| leukocyte | 1.34e-07 | 17 |
| nongranular leukocyte | 1.34e-07 | 17 |
| mature alpha-beta T cell | 1.89e-07 | 9 |
| alpha-beta T cell | 1.89e-07 | 9 |
| immature T cell | 1.89e-07 | 9 |
| mature T cell | 1.89e-07 | 9 |
| immature alpha-beta T cell | 1.89e-07 | 9 |
| CD4-positive, alpha-beta T cell | 8.76e-07 | 8 |
| Ontology term | p-value | n |
|---|---|---|
| connective tissue | 3.44e-14 | 46 |
| hematopoietic system | 1.32e-08 | 45 |
| blood island | 1.32e-08 | 45 |
| hemolymphoid system | 1.59e-08 | 48 |
| immune system | 1.59e-08 | 48 |
