FFCP PHASE1:Mm9::chr15:78939158..78939210,+: Difference between revisions
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{{FFCP|EntrezGene=27008|HGNC=|UniProt=Q8BGT6|association_with_transcript=-202bp_to_ENSMUST00000040320,NM_177461,uc007wsm.2,uc007wsn.2,uc007wso.2_5end|description=CAGE_peak_3_at_Micall1_5end|id=chr15:78939158..78939210,+|ontology_enrichment_celltype=CL:0000055!4.44e-17!50;CL:0000221!5.54e-17!44;CL:0000133!5.54e-17!44;CL:0002319!1.63e-16!43;CL:0000393!1.32e-14!39;CL:0000211!1.32e-14!39;CL:0000540!5.32e-13!33;CL:0000047!5.32e-13!33;CL:0000031!5.32e-13!33;CL:0000404!5.32e-13!33;CL:0000117!3.57e-11!23;CL:0000337!3.57e-11!23;CL:0002321!1.62e-10!70;CL:0000220!1.62e-10!70|ontology_enrichment_celltype_v019_2=CL:0000221,4.29e-18,44;CL:0000133,4.29e-18,44;CL:0002319,1.34e-17,43;CL:0000393,1.39e-15,39;CL:0000211,1.39e-15,39;CL:0000540,6.81e-14,33;CL:0000047,6.81e-14,33;CL:0000031,6.81e-14,33;CL:0000404,6.81e-14,33;CL:0002321,2.04e-12,70;CL:0000117,5.41e-12,23;CL:0000337,5.41e-12,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.33e-17!75;UBERON:0001016!2.33e-17!75;UBERON:0001017!2.50e-16!73;UBERON:0005743!2.50e-16!73;UBERON:0004121!5.62e-13!102;UBERON:0000924!5.62e-13!102;UBERON:0006601!5.62e-13!102;UBERON:0002020!8.62e-12!34;UBERON:0001049!3.76e-10!52;UBERON:0005068!3.76e-10!52;UBERON:0006241!3.76e-10!52;UBERON:0007135!3.76e-10!52;UBERON:0000955!1.15e-09!50;UBERON:0006238!1.15e-09!50;UBERON:0002616!1.84e-09!49;UBERON:0002791!2.32e-09!29;UBERON:0003528!2.32e-09!29;UBERON:0001893!2.32e-09!29;UBERON:0002780!2.73e-08!39;UBERON:0001890!2.73e-08!39;UBERON:0006240!2.73e-08!39;UBERON:0003080!2.97e-08!40;UBERON:0000033!7.14e-08!63;UBERON:0002346!8.49e-08!71;UBERON:0003075!8.49e-08!71;UBERON:0007284!8.49e-08!71;UBERON:0000025!8.88e-08!114;UBERON:0004111!1.78e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.02e-17,75;UBERON:0001017,1.22e-16,73;UBERON:0004121,1.98e-13,95;UBERON:0000924,1.98e-13,95;UBERON:0006601,1.98e-13,95;UBERON:0002020,4.11e-12,34;UBERON:0000073,8.14e-12,54;UBERON:0010314,1.71e-11,92;UBERON:0001049,3.42e-10,52;UBERON:0005068,3.42e-10,52;UBERON:0006241,3.42e-10,52;UBERON:0007135,3.42e-10,52;UBERON:0003528,1.45e-09,29;UBERON:0002791,1.45e-09,29;UBERON:0001893,1.45e-09,29;UBERON:0000025,4.42e-09,114;UBERON:0004111,8.76e-09,122;UBERON:0002346,1.16e-08,64;UBERON:0003075,1.16e-08,64;UBERON:0007284,1.16e-08,64;UBERON:0000955,2.98e-08,47;UBERON:0006238,2.98e-08,47;UBERON:0010371,3.11e-08,73;UBERON:0002780,3.43e-08,39;UBERON:0001890,3.43e-08,39;UBERON:0006240,3.43e-08,39;UBERON:0003080,3.68e-08,40;UBERON:0002616,4.80e-08,46|phase1_expression=2.5623815536767,2.44282785347553,1.36499771816861,0.30246421130683,1.00179145989269,1.84667199103079,0.467225281191051,1.67860320474049,0.422366166455,0.468129052643987,0,1.03703806693937,0.342401459862411,1.57356724354195,0,0.202475267389826,0,0.157731082679119,0.274228867211478,0,2.46625541438102,0.397163804803541,0,0.639969691173627,0.22940928106717,1.14846392823004,0.86152399231815,0.646413698057667,0.190023419456374,0,0,1.27006134691926,1.84519436275371,0,0,0.166234645358492,0,0,0,0,0,0.683045484958446,0.485510353031154,3.39921408534059,3.14268486780495,3.12029478674859,4.69434806608824,1.96222640742402,7.24964403023757,4.47188767870852,2.65974201088189,1.43752564364972,0.167782606057736,0.725362142011344,0,2.31533492432352,1.71920063963254,2.06268836910977,5.46254444320914,2.11596391708813,4.43681982454325,2.71075625655306,0,0.899899717281399,0.988866362566974,1.4209602298922,2.39680088414724,2.30530983192933,3.52544681848824,2.8351247049655,3.78584930432488,3.71346279724945,3.3130281142742,2.69479758272899,3.64212789869298,0,3.30347642998166,5.36286819957788,4.91540906419979,6.59431438650969,7.41049913179518,5.73004707612436,4.18774498502071,3.37657566019008,5.50073691996516,5.00868595305235,3.98640706237488,2.98239113320481,3.48340489332647,3.40072020480535,1.73918693221007,0,0,0.539703191637817,0,0,1.82577746171277,2.72688516124892,2.07828803682295,2.12003744706204,3.23939865486365,2.56652954828636,10.1922095882658,7.11066703153331,0.216491041011214,0.506719730950197,0,1.94112595522402,0,1.7813056687779,0.867426633830679,1.21786191324856,0.691846491768175,1.50722640552623,1.17588707135705,1.13099932196708,1.48316980640624,1.15679485535929,0,1.13236794963186,1.10420759230197,2.42437626567611,1.86391761218122,0.292780797011547,1.04723353406728,0.766371165625774,0.239630249011841,0,0.381210681219194,1.64769703345305,0.915001205637253,3.39266750704734,3.12883776346098,2.04572365864264,2.0778804455956,3.24482526135515,2.24046600470696,0.622034853050465,1.51633655060205,1.05220927943237,1.56144531555244,0.689706313300419,0.540186389416048,1.05493372485001,2.10913147369116,1.2811372028485,1.59292931751539,1.03481348295606,0.862271971731369,1.70195472151037,0.879755620819744,0.657587197282725,1.39023624612799,2.089512999133,2.05782136407943,0.796137067273973,0,0.51469581422943,0,1.03562886267751,1.17263029990548,2.52086886045421,2.3674473558521,3.73852040320067,2.62254091908543,6.27841650826101,6.1702882321912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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=27008 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q8BGT6 | |||
|association_with_transcript=-202bp_to_ENSMUST00000040320,NM_177461,uc007wsm.2,uc007wsn.2,uc007wso.2_5end | |||
|cluster_id=chr15:78939158..78939210,+ | |||
|description=CAGE_peak_3_at_Micall1_5end | |||
|id=chr15:78939158..78939210,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.44e-17!50;CL:0000221!5.54e-17!44;CL:0000133!5.54e-17!44;CL:0002319!1.63e-16!43;CL:0000393!1.32e-14!39;CL:0000211!1.32e-14!39;CL:0000540!5.32e-13!33;CL:0000047!5.32e-13!33;CL:0000031!5.32e-13!33;CL:0000404!5.32e-13!33;CL:0000117!3.57e-11!23;CL:0000337!3.57e-11!23;CL:0002321!1.62e-10!70;CL:0000220!1.62e-10!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.29e-18,44;CL:0000133,4.29e-18,44;CL:0002319,1.34e-17,43;CL:0000393,1.39e-15,39;CL:0000211,1.39e-15,39;CL:0000540,6.81e-14,33;CL:0000047,6.81e-14,33;CL:0000031,6.81e-14,33;CL:0000404,6.81e-14,33;CL:0002321,2.04e-12,70;CL:0000117,5.41e-12,23;CL:0000337,5.41e-12,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.33e-17!75;UBERON:0001016!2.33e-17!75;UBERON:0001017!2.50e-16!73;UBERON:0005743!2.50e-16!73;UBERON:0004121!5.62e-13!102;UBERON:0000924!5.62e-13!102;UBERON:0006601!5.62e-13!102;UBERON:0002020!8.62e-12!34;UBERON:0001049!3.76e-10!52;UBERON:0005068!3.76e-10!52;UBERON:0006241!3.76e-10!52;UBERON:0007135!3.76e-10!52;UBERON:0000955!1.15e-09!50;UBERON:0006238!1.15e-09!50;UBERON:0002616!1.84e-09!49;UBERON:0002791!2.32e-09!29;UBERON:0003528!2.32e-09!29;UBERON:0001893!2.32e-09!29;UBERON:0002780!2.73e-08!39;UBERON:0001890!2.73e-08!39;UBERON:0006240!2.73e-08!39;UBERON:0003080!2.97e-08!40;UBERON:0000033!7.14e-08!63;UBERON:0002346!8.49e-08!71;UBERON:0003075!8.49e-08!71;UBERON:0007284!8.49e-08!71;UBERON:0000025!8.88e-08!114;UBERON:0004111!1.78e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.02e-17,75;UBERON:0001017,1.22e-16,73;UBERON:0004121,1.98e-13,95;UBERON:0000924,1.98e-13,95;UBERON:0006601,1.98e-13,95;UBERON:0002020,4.11e-12,34;UBERON:0000073,8.14e-12,54;UBERON:0010314,1.71e-11,92;UBERON:0001049,3.42e-10,52;UBERON:0005068,3.42e-10,52;UBERON:0006241,3.42e-10,52;UBERON:0007135,3.42e-10,52;UBERON:0003528,1.45e-09,29;UBERON:0002791,1.45e-09,29;UBERON:0001893,1.45e-09,29;UBERON:0000025,4.42e-09,114;UBERON:0004111,8.76e-09,122;UBERON:0002346,1.16e-08,64;UBERON:0003075,1.16e-08,64;UBERON:0007284,1.16e-08,64;UBERON:0000955,2.98e-08,47;UBERON:0006238,2.98e-08,47;UBERON:0010371,3.11e-08,73;UBERON:0002780,3.43e-08,39;UBERON:0001890,3.43e-08,39;UBERON:0006240,3.43e-08,39;UBERON:0003080,3.68e-08,40;UBERON:0002616,4.80e-08,46 | |||
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| |||
|short_description=p3@Micall1 | |||
}} |
Latest revision as of 02:42, 27 September 2015
Short description: | p3@Micall1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Micall1_5end |
Coexpression cluster: | NA |
Association with transcript: | -202bp_to_ENSMUST00000040320, NM_177461, uc007wsm.2, uc007wsn.2, uc007wso.2_5end |
EntrezGene: | Micall1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.29e-18 | 44 |
neurectodermal cell | 4.29e-18 | 44 |
neural cell | 1.34e-17 | 43 |
electrically responsive cell | 1.39e-15 | 39 |
electrically active cell | 1.39e-15 | 39 |
neuron | 6.81e-14 | 33 |
neuronal stem cell | 6.81e-14 | 33 |
neuroblast | 6.81e-14 | 33 |
electrically signaling cell | 6.81e-14 | 33 |
embryonic cell | 2.04e-12 | 70 |
CNS neuron (sensu Vertebrata) | 5.41e-12 | 23 |
neuroblast (sensu Vertebrata) | 5.41e-12 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.02e-17 | 75 |
central nervous system | 1.22e-16 | 73 |
ectoderm-derived structure | 1.98e-13 | 95 |
ectoderm | 1.98e-13 | 95 |
presumptive ectoderm | 1.98e-13 | 95 |
gray matter | 4.11e-12 | 34 |
regional part of nervous system | 8.14e-12 | 54 |
structure with developmental contribution from neural crest | 1.71e-11 | 92 |
neural tube | 3.42e-10 | 52 |
neural rod | 3.42e-10 | 52 |
future spinal cord | 3.42e-10 | 52 |
neural keel | 3.42e-10 | 52 |
brain grey matter | 1.45e-09 | 29 |
regional part of telencephalon | 1.45e-09 | 29 |
telencephalon | 1.45e-09 | 29 |
tube | 4.42e-09 | 114 |
anatomical conduit | 8.76e-09 | 122 |
neurectoderm | 1.16e-08 | 64 |
neural plate | 1.16e-08 | 64 |
presumptive neural plate | 1.16e-08 | 64 |
brain | 2.98e-08 | 47 |
future brain | 2.98e-08 | 47 |
ecto-epithelium | 3.11e-08 | 73 |
regional part of forebrain | 3.43e-08 | 39 |
forebrain | 3.43e-08 | 39 |
future forebrain | 3.43e-08 | 39 |
anterior neural tube | 3.68e-08 | 40 |
regional part of brain | 4.80e-08 | 46 |