FFCP PHASE1:Mm9::chr1:37486916..37486925,-: Difference between revisions
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{{FFCP|EntrezGene=76178|HGNC=|MCL_coexpression_id=60|UniProt=Q99M07|association_with_transcript=22bp_to_ENSMUST00000027286,NM_198006,uc007aro.2_5end|description=CAGE_peak_4_at_6330578E17Rik_5end|id=chr1:37486916..37486925,-|ontology_enrichment_celltype=CL:0000117!5.61e-13!23;CL:0000337!5.61e-13!23;CL:0000055!2.05e-08!50;CL:0002319!6.25e-08!43;CL:0000540!9.04e-08!33;CL:0000047!9.04e-08!33;CL:0000031!9.04e-08!33;CL:0000404!9.04e-08!33;CL:0000221!1.03e-07!44;CL:0000133!1.03e-07!44;CL:0000393!1.04e-07!39;CL:0000211!1.04e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.03e-21,23;CL:0000337,2.03e-21,23;CL:0000540,7.17e-13,33;CL:0000047,7.17e-13,33;CL:0000031,7.17e-13,33;CL:0000404,7.17e-13,33;CL:0000393,7.17e-11,39;CL:0000211,7.17e-11,39;CL:0002319,2.09e-09,43;CL:0000221,4.78e-09,44;CL:0000133,4.78e-09,44;CL:0002609,2.59e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.23e-16!52;UBERON:0005068!3.23e-16!52;UBERON:0006241!3.23e-16!52;UBERON:0007135!3.23e-16!52;UBERON:0001017!9.66e-16!73;UBERON:0005743!9.66e-16!73;UBERON:0000073!1.44e-15!75;UBERON:0001016!1.44e-15!75;UBERON:0000955!3.65e-15!50;UBERON:0006238!3.65e-15!50;UBERON:0002020!4.08e-15!34;UBERON:0002616!7.21e-15!49;UBERON:0000033!1.71e-13!63;UBERON:0002346!3.17e-13!71;UBERON:0003075!3.17e-13!71;UBERON:0007284!3.17e-13!71;UBERON:0003080!3.70e-13!40;UBERON:0002780!4.18e-13!39;UBERON:0001890!4.18e-13!39;UBERON:0006240!4.18e-13!39;UBERON:0002791!1.12e-12!29;UBERON:0003528!1.12e-12!29;UBERON:0001893!1.12e-12!29;UBERON:0004121!3.52e-12!102;UBERON:0000924!3.52e-12!102;UBERON:0006601!3.52e-12!102;UBERON:0003056!7.43e-12!49;UBERON:0007811!2.35e-11!86;UBERON:0000153!2.09e-10!94;UBERON:0000956!6.32e-09!21;UBERON:0001869!6.32e-09!21;UBERON:0000203!6.32e-09!21;UBERON:0002619!3.02e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.15e-21,54;UBERON:0002020,1.26e-21,34;UBERON:0001049,1.09e-19,52;UBERON:0005068,1.09e-19,52;UBERON:0006241,1.09e-19,52;UBERON:0007135,1.09e-19,52;UBERON:0001017,1.01e-18,73;UBERON:0002780,1.39e-18,39;UBERON:0001890,1.39e-18,39;UBERON:0006240,1.39e-18,39;UBERON:0003528,3.32e-18,29;UBERON:0002791,3.32e-18,29;UBERON:0001893,3.32e-18,29;UBERON:0003080,6.71e-18,40;UBERON:0001016,6.81e-18,75;UBERON:0002616,9.85e-16,46;UBERON:0000955,3.28e-15,47;UBERON:0006238,3.28e-15,47;UBERON:0002346,4.65e-14,64;UBERON:0003075,4.65e-14,64;UBERON:0007284,4.65e-14,64;UBERON:0000956,1.59e-13,21;UBERON:0001869,1.59e-13,21;UBERON:0000203,1.59e-13,21;UBERON:0003056,4.83e-13,49;UBERON:0004121,1.28e-11,95;UBERON:0000924,1.28e-11,95;UBERON:0006601,1.28e-11,95;UBERON:0002619,1.73e-11,17;UBERON:0010371,4.15e-11,73;UBERON:0010314,1.18e-08,92;UBERON:0002021,3.88e-08,10;UBERON:0000411,3.88e-08,10;UBERON:0001950,3.88e-08,10|phase1_expression=0.480446541314382,0.348975407639361,0,0,0.500895729946347,0.16787927191189,0,0.903863264091034,0,0.234064526321993,0.513653904676515,0.717949430958028,0.171200729931206,0.174840804837995,0,0,0,0.315462165358238,0.274228867211478,0,1.44573593256819,0.0992909512008853,1.04479915655574,0.47997726838022,0.68822784320151,0.57423196411502,0,0,0.380046838912748,0,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0,0.837063261473815,0.7813353445238,0.523523743973798,0,0.683045484958446,0.485510353031154,0.755380907853464,0.405507724878058,0.734187008646726,0.782391344348039,0.436050312760893,0.659058548203415,0.972149495371417,0.839918529752175,1.43752564364972,0.838913030288682,0,0.672187598284928,0.257259436035947,0.85960031981627,1.03134418455488,1.01158230429799,5.81890077199236,1.90149421051854,0,0.889294796111139,0,1.97773272513395,0.7104801149461,0.599200221036809,0.384218305321555,2.17748185847803,2.02508907497536,1.47227472945967,0.856952953211411,3.09215957332259,3.06226998037385,2.87536413054709,2.75765635983006,2.20231761998777,1.14918604276669,1.84327839907492,3.29715719325485,3.65950574409639,2.08365348222704,0.837548997004143,2.8138130501584,1.06958773443767,1.47314292736834,1.42371680799103,3.54158947068071,0.681535739998656,0.453429360640713,0,1.72084775396277,0,0,0,0,0.561777680527007,0.681721290312231,0,0.35333957451034,0.422530259330042,0,0,0,1.29894624606728,0.760079596425296,0,0.22836775943812,0,1.03909497345377,0.693941307064543,0.304465478312141,0.230615497256059,0.301445281105245,1.05829836422134,0.376999773989026,0.494389935468748,0.144599356919912,0,0.161766849947409,0.220841518460394,0,0,0.878342391034642,0.41889341362691,0,0.11981512450592,0.599902730993408,0.127070227073065,0.748953197024114,0.915001205637253,2.63874139437015,0.869121600961382,2.81287003063364,1.87009240103604,1.46017136760982,0.509196819251581,0.248813941220186,0.758168275301024,0.841767423545896,0.650602214813519,0.229902104433473,0.720248519221397,0.60281927134286,0.884474488967262,0.384341160854549,0.655912071918102,0.258703370739016,0.431135985865684,1.13463648100692,0.879755620819744,0,0.556094498451196,0.348252166522167,0.61734640922383,0.398068533636986,0.7022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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76178 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=Q99M07 | |||
|association_with_transcript=22bp_to_ENSMUST00000027286,NM_198006,uc007aro.2_5end | |||
|cluster_id=chr1:37486916..37486925,- | |||
|description=CAGE_peak_4_at_6330578E17Rik_5end | |||
|id=chr1:37486916..37486925,- | |||
|ontology_enrichment_celltype=CL:0000117!5.61e-13!23;CL:0000337!5.61e-13!23;CL:0000055!2.05e-08!50;CL:0002319!6.25e-08!43;CL:0000540!9.04e-08!33;CL:0000047!9.04e-08!33;CL:0000031!9.04e-08!33;CL:0000404!9.04e-08!33;CL:0000221!1.03e-07!44;CL:0000133!1.03e-07!44;CL:0000393!1.04e-07!39;CL:0000211!1.04e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.03e-21,23;CL:0000337,2.03e-21,23;CL:0000540,7.17e-13,33;CL:0000047,7.17e-13,33;CL:0000031,7.17e-13,33;CL:0000404,7.17e-13,33;CL:0000393,7.17e-11,39;CL:0000211,7.17e-11,39;CL:0002319,2.09e-09,43;CL:0000221,4.78e-09,44;CL:0000133,4.78e-09,44;CL:0002609,2.59e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.23e-16!52;UBERON:0005068!3.23e-16!52;UBERON:0006241!3.23e-16!52;UBERON:0007135!3.23e-16!52;UBERON:0001017!9.66e-16!73;UBERON:0005743!9.66e-16!73;UBERON:0000073!1.44e-15!75;UBERON:0001016!1.44e-15!75;UBERON:0000955!3.65e-15!50;UBERON:0006238!3.65e-15!50;UBERON:0002020!4.08e-15!34;UBERON:0002616!7.21e-15!49;UBERON:0000033!1.71e-13!63;UBERON:0002346!3.17e-13!71;UBERON:0003075!3.17e-13!71;UBERON:0007284!3.17e-13!71;UBERON:0003080!3.70e-13!40;UBERON:0002780!4.18e-13!39;UBERON:0001890!4.18e-13!39;UBERON:0006240!4.18e-13!39;UBERON:0002791!1.12e-12!29;UBERON:0003528!1.12e-12!29;UBERON:0001893!1.12e-12!29;UBERON:0004121!3.52e-12!102;UBERON:0000924!3.52e-12!102;UBERON:0006601!3.52e-12!102;UBERON:0003056!7.43e-12!49;UBERON:0007811!2.35e-11!86;UBERON:0000153!2.09e-10!94;UBERON:0000956!6.32e-09!21;UBERON:0001869!6.32e-09!21;UBERON:0000203!6.32e-09!21;UBERON:0002619!3.02e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.15e-21,54;UBERON:0002020,1.26e-21,34;UBERON:0001049,1.09e-19,52;UBERON:0005068,1.09e-19,52;UBERON:0006241,1.09e-19,52;UBERON:0007135,1.09e-19,52;UBERON:0001017,1.01e-18,73;UBERON:0002780,1.39e-18,39;UBERON:0001890,1.39e-18,39;UBERON:0006240,1.39e-18,39;UBERON:0003528,3.32e-18,29;UBERON:0002791,3.32e-18,29;UBERON:0001893,3.32e-18,29;UBERON:0003080,6.71e-18,40;UBERON:0001016,6.81e-18,75;UBERON:0002616,9.85e-16,46;UBERON:0000955,3.28e-15,47;UBERON:0006238,3.28e-15,47;UBERON:0002346,4.65e-14,64;UBERON:0003075,4.65e-14,64;UBERON:0007284,4.65e-14,64;UBERON:0000956,1.59e-13,21;UBERON:0001869,1.59e-13,21;UBERON:0000203,1.59e-13,21;UBERON:0003056,4.83e-13,49;UBERON:0004121,1.28e-11,95;UBERON:0000924,1.28e-11,95;UBERON:0006601,1.28e-11,95;UBERON:0002619,1.73e-11,17;UBERON:0010371,4.15e-11,73;UBERON:0010314,1.18e-08,92;UBERON:0002021,3.88e-08,10;UBERON:0000411,3.88e-08,10;UBERON:0001950,3.88e-08,10 | |||
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| |||
|short_description=p4@6330578E17Rik | |||
}} |
Latest revision as of 02:39, 27 September 2015
Short description: | p4@6330578E17Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_6330578E17Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 22bp_to_ENSMUST00000027286, NM_198006, uc007aro.2_5end |
EntrezGene: | 6330578E17Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.03e-21 | 23 |
neuroblast (sensu Vertebrata) | 2.03e-21 | 23 |
neuron | 7.17e-13 | 33 |
neuronal stem cell | 7.17e-13 | 33 |
neuroblast | 7.17e-13 | 33 |
electrically signaling cell | 7.17e-13 | 33 |
electrically responsive cell | 7.17e-11 | 39 |
electrically active cell | 7.17e-11 | 39 |
neural cell | 2.09e-09 | 43 |
ectodermal cell | 4.78e-09 | 44 |
neurectodermal cell | 4.78e-09 | 44 |
neuron of cerebral cortex | 2.59e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.15e-21 | 54 |
gray matter | 1.26e-21 | 34 |
neural tube | 1.09e-19 | 52 |
neural rod | 1.09e-19 | 52 |
future spinal cord | 1.09e-19 | 52 |
neural keel | 1.09e-19 | 52 |
central nervous system | 1.01e-18 | 73 |
regional part of forebrain | 1.39e-18 | 39 |
forebrain | 1.39e-18 | 39 |
future forebrain | 1.39e-18 | 39 |
brain grey matter | 3.32e-18 | 29 |
regional part of telencephalon | 3.32e-18 | 29 |
telencephalon | 3.32e-18 | 29 |
anterior neural tube | 6.71e-18 | 40 |
nervous system | 6.81e-18 | 75 |
regional part of brain | 9.85e-16 | 46 |
brain | 3.28e-15 | 47 |
future brain | 3.28e-15 | 47 |
neurectoderm | 4.65e-14 | 64 |
neural plate | 4.65e-14 | 64 |
presumptive neural plate | 4.65e-14 | 64 |
cerebral cortex | 1.59e-13 | 21 |
cerebral hemisphere | 1.59e-13 | 21 |
pallium | 1.59e-13 | 21 |
pre-chordal neural plate | 4.83e-13 | 49 |
ectoderm-derived structure | 1.28e-11 | 95 |
ectoderm | 1.28e-11 | 95 |
presumptive ectoderm | 1.28e-11 | 95 |
regional part of cerebral cortex | 1.73e-11 | 17 |
ecto-epithelium | 4.15e-11 | 73 |
structure with developmental contribution from neural crest | 1.18e-08 | 92 |
occipital lobe | 3.88e-08 | 10 |
visual cortex | 3.88e-08 | 10 |
neocortex | 3.88e-08 | 10 |