FFCP PHASE1:Mm9::chr1:3661752..3661814,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=497097 | |EntrezGene=497097 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q5GH67 | |UniProt=Q5GH67 | ||
|association_with_transcript=-173bp_to_ENSMUST00000070533,NM_001011874,uc007aeu.1_5end | |association_with_transcript=-173bp_to_ENSMUST00000070533,NM_001011874,uc007aeu.1_5end | ||
|cluster_id=chr1:3661752..3661814,- | |||
|description=CAGE_peak_1_at_Xkr4_5end | |description=CAGE_peak_1_at_Xkr4_5end | ||
|id=chr1:3661752..3661814,- | |id=chr1:3661752..3661814,- | ||
|ontology_enrichment_celltype=CL:0000540!1.86e-15!33;CL:0000047!1.86e-15!33;CL:0000031!1.86e-15!33;CL:0000404!1.86e-15!33;CL:0000393!1.25e-12!39;CL:0000211!1.25e-12!39;CL:0000117!4.94e-12!23;CL:0000337!4.94e-12!23;CL:0000221!7.76e-12!44;CL:0000133!7.76e-12!44;CL:0002319!1.22e-11!43;CL:0000055!3.18e-09!50 | |ontology_enrichment_celltype=CL:0000540!1.86e-15!33;CL:0000047!1.86e-15!33;CL:0000031!1.86e-15!33;CL:0000404!1.86e-15!33;CL:0000393!1.25e-12!39;CL:0000211!1.25e-12!39;CL:0000117!4.94e-12!23;CL:0000337!4.94e-12!23;CL:0000221!7.76e-12!44;CL:0000133!7.76e-12!44;CL:0002319!1.22e-11!43;CL:0000055!3.18e-09!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.62e-17,33;CL:0000047,2.62e-17,33;CL:0000031,2.62e-17,33;CL:0000404,2.62e-17,33;CL:0000393,3.81e-14,39;CL:0000211,3.81e-14,39;CL:0000117,5.77e-14,23;CL:0000337,5.77e-14,23;CL:0000221,5.22e-13,44;CL:0000133,5.22e-13,44;CL:0002319,8.93e-13,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.32e-27!102;UBERON:0000924!3.32e-27!102;UBERON:0006601!3.32e-27!102;UBERON:0000073!9.38e-27!75;UBERON:0001016!9.38e-27!75;UBERON:0001017!2.21e-26!73;UBERON:0005743!2.21e-26!73;UBERON:0002346!1.51e-24!71;UBERON:0003075!1.51e-24!71;UBERON:0007284!1.51e-24!71;UBERON:0000033!7.55e-21!63;UBERON:0001049!2.61e-20!52;UBERON:0005068!2.61e-20!52;UBERON:0006241!2.61e-20!52;UBERON:0007135!2.61e-20!52;UBERON:0000955!2.51e-19!50;UBERON:0006238!2.51e-19!50;UBERON:0003056!4.41e-19!49;UBERON:0002616!9.40e-19!49;UBERON:0002020!3.99e-17!34;UBERON:0003080!2.42e-16!40;UBERON:0002780!7.29e-16!39;UBERON:0001890!7.29e-16!39;UBERON:0006240!7.29e-16!39;UBERON:0002791!5.41e-14!29;UBERON:0003528!5.41e-14!29;UBERON:0001893!5.41e-14!29;UBERON:0000956!1.16e-09!21;UBERON:0001869!1.16e-09!21;UBERON:0000203!1.16e-09!21;UBERON:0000468!1.50e-09!333;UBERON:0007811!5.05e-09!86;UBERON:0002619!1.04e-08!17;UBERON:0002021!1.17e-07!10;UBERON:0000411!1.17e-07!10;UBERON:0001950!1.17e-07!10;UBERON:0000153!7.13e-07!94;UBERON:0000922!8.21e-07!328 | |ontology_enrichment_uberon=UBERON:0004121!3.32e-27!102;UBERON:0000924!3.32e-27!102;UBERON:0006601!3.32e-27!102;UBERON:0000073!9.38e-27!75;UBERON:0001016!9.38e-27!75;UBERON:0001017!2.21e-26!73;UBERON:0005743!2.21e-26!73;UBERON:0002346!1.51e-24!71;UBERON:0003075!1.51e-24!71;UBERON:0007284!1.51e-24!71;UBERON:0000033!7.55e-21!63;UBERON:0001049!2.61e-20!52;UBERON:0005068!2.61e-20!52;UBERON:0006241!2.61e-20!52;UBERON:0007135!2.61e-20!52;UBERON:0000955!2.51e-19!50;UBERON:0006238!2.51e-19!50;UBERON:0003056!4.41e-19!49;UBERON:0002616!9.40e-19!49;UBERON:0002020!3.99e-17!34;UBERON:0003080!2.42e-16!40;UBERON:0002780!7.29e-16!39;UBERON:0001890!7.29e-16!39;UBERON:0006240!7.29e-16!39;UBERON:0002791!5.41e-14!29;UBERON:0003528!5.41e-14!29;UBERON:0001893!5.41e-14!29;UBERON:0000956!1.16e-09!21;UBERON:0001869!1.16e-09!21;UBERON:0000203!1.16e-09!21;UBERON:0000468!1.50e-09!333;UBERON:0007811!5.05e-09!86;UBERON:0002619!1.04e-08!17;UBERON:0002021!1.17e-07!10;UBERON:0000411!1.17e-07!10;UBERON:0001950!1.17e-07!10;UBERON:0000153!7.13e-07!94;UBERON:0000922!8.21e-07!328 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.39e-29,75;UBERON:0001017,6.68e-29,73;UBERON:0004121,1.40e-28,95;UBERON:0000924,1.40e-28,95;UBERON:0006601,1.40e-28,95;UBERON:0002346,1.15e-25,64;UBERON:0003075,1.15e-25,64;UBERON:0007284,1.15e-25,64;UBERON:0000073,6.64e-24,54;UBERON:0010371,7.83e-23,73;UBERON:0001049,6.02e-22,52;UBERON:0005068,6.02e-22,52;UBERON:0006241,6.02e-22,52;UBERON:0007135,6.02e-22,52;UBERON:0003056,8.86e-21,49;UBERON:0002020,1.43e-19,34;UBERON:0000955,1.73e-18,47;UBERON:0006238,1.73e-18,47;UBERON:0010314,5.94e-18,92;UBERON:0002616,7.64e-18,46;UBERON:0003080,1.57e-17,40;UBERON:0002780,5.68e-17,39;UBERON:0001890,5.68e-17,39;UBERON:0006240,5.68e-17,39;UBERON:0003528,7.09e-16,29;UBERON:0002791,7.09e-16,29;UBERON:0001893,7.09e-16,29;UBERON:0000956,9.09e-11,21;UBERON:0001869,9.09e-11,21;UBERON:0000203,9.09e-11,21;UBERON:0002619,1.25e-09,17;UBERON:0002021,8.66e-09,10;UBERON:0000411,8.66e-09,10;UBERON:0001950,8.66e-09,10 | |||
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| ||
|short_description=p1@Xkr4 | |short_description=p1@Xkr4 | ||
}} | }} |
Latest revision as of 02:22, 27 September 2015
Short description: | p1@Xkr4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Xkr4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -173bp_to_ENSMUST00000070533, NM_001011874, uc007aeu.1_5end |
EntrezGene: | Xkr4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.62e-17 | 33 |
neuronal stem cell | 2.62e-17 | 33 |
neuroblast | 2.62e-17 | 33 |
electrically signaling cell | 2.62e-17 | 33 |
electrically responsive cell | 3.81e-14 | 39 |
electrically active cell | 3.81e-14 | 39 |
CNS neuron (sensu Vertebrata) | 5.77e-14 | 23 |
neuroblast (sensu Vertebrata) | 5.77e-14 | 23 |
ectodermal cell | 5.22e-13 | 44 |
neurectodermal cell | 5.22e-13 | 44 |
neural cell | 8.93e-13 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.39e-29 | 75 |
central nervous system | 6.68e-29 | 73 |
ectoderm-derived structure | 1.40e-28 | 95 |
ectoderm | 1.40e-28 | 95 |
presumptive ectoderm | 1.40e-28 | 95 |
neurectoderm | 1.15e-25 | 64 |
neural plate | 1.15e-25 | 64 |
presumptive neural plate | 1.15e-25 | 64 |
regional part of nervous system | 6.64e-24 | 54 |
ecto-epithelium | 7.83e-23 | 73 |
neural tube | 6.02e-22 | 52 |
neural rod | 6.02e-22 | 52 |
future spinal cord | 6.02e-22 | 52 |
neural keel | 6.02e-22 | 52 |
pre-chordal neural plate | 8.86e-21 | 49 |
gray matter | 1.43e-19 | 34 |
brain | 1.73e-18 | 47 |
future brain | 1.73e-18 | 47 |
structure with developmental contribution from neural crest | 5.94e-18 | 92 |
regional part of brain | 7.64e-18 | 46 |
anterior neural tube | 1.57e-17 | 40 |
regional part of forebrain | 5.68e-17 | 39 |
forebrain | 5.68e-17 | 39 |
future forebrain | 5.68e-17 | 39 |
brain grey matter | 7.09e-16 | 29 |
regional part of telencephalon | 7.09e-16 | 29 |
telencephalon | 7.09e-16 | 29 |
cerebral cortex | 9.09e-11 | 21 |
cerebral hemisphere | 9.09e-11 | 21 |
pallium | 9.09e-11 | 21 |
regional part of cerebral cortex | 1.25e-09 | 17 |
occipital lobe | 8.66e-09 | 10 |
visual cortex | 8.66e-09 | 10 |
neocortex | 8.66e-09 | 10 |